RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase [Candidatus Liberibacter asiaticus str. psy62] (189 letters) >d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193 Score = 144 bits (365), Expect = 3e-36 Identities = 67/192 (34%), Positives = 94/192 (48%), Gaps = 4/192 (2%) Query: 1 MFIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFP-AWKKKFHAEISEGQLDGLRTILI 59 + ++ GL NPG EY RHN G +D + P + KF S L G L+ Sbjct: 2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLL 61 Query: 60 KPQTFMNLSGQSLLEVMNFYKLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSIS 119 P TFMNLSG+++ + +F+++ + LV HD+LDL G + K GGG GHNGLK I Sbjct: 62 VPTTFMNLSGKAVAAMASFFRIN-PDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 120 Query: 120 EKC--GKNYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPIIDNIARSLPLLAKRED 177 K N+ RLRIGIG P D ++ VLG E+ + ID AR + Sbjct: 121 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGL 180 Query: 178 VSFLNHIVSVRK 189 N + + + Sbjct: 181 TKATNRLHAFKA 192 >d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191 Score = 135 bits (341), Expect = 2e-33 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 3/185 (1%) Query: 2 FIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKP 61 +++AGLGNPG++Y RHN+GF +DRI + + + + G + + +++KP Sbjct: 4 WLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKP 63 Query: 62 QTFMNLSGQSLLEVMNFYKLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEK 121 Q++MN SG+++ + +Y++ L + L+I+DD L G LRL+ GG HNGL+++ E Sbjct: 64 QSYMNYSGEAIGPLAAYYQV-PLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 122 Query: 122 CG--KNYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPIIDNIARSLPLLAKREDVS 179 + + RL IGIG PP +L FSS ER + ++ ++ L + Sbjct: 123 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 182 Query: 180 FLNHI 184 Sbjct: 183 STERF 187 >d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 192 Score = 27.8 bits (62), Expect = 0.66 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 114 GLKSISEKCGKNYKRLRIGIGRPPDTAHIIRHVLG-NFSSP----ERYFLLP-IIDNI 165 G ++I ++ RLR+ + P H+ H F +P ER LL +I+N+ Sbjct: 102 GQEAILKRYQVTGDRLRVYLHYLPSYYHLHVHFTALGFEAPGSGVERAHLLAQVIENL 159 >d1bsga_ e.3.1.1 (A:) beta-Lactamase, class A {Streptomyces albus G [TaxId: 1962]} Length = 266 Score = 26.4 bits (57), Expect = 1.8 Identities = 22/162 (13%), Positives = 38/162 (23%), Gaps = 21/162 (12%) Query: 8 GNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKPQTFMNL 67 G +DR + +++ Sbjct: 121 GPAAVTRFVRSLGDRVTRLDRWEPELNSAEPGRVTDTTSPRAITRTYGRLVLGDALNPRD 180 Query: 68 SGQSLLEVMNFYKLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCGKNYK 127 ++ + + D TL KTG G G N Sbjct: 181 RRLLTSWLLANTTSGDRFRAGLP------DDWTLGDKTGAGRYGTNND------------ 222 Query: 128 RLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPIIDNIARSL 169 G+ PP A I+ VL + + ++ + AR L Sbjct: 223 ---AGVTWPPGRAPIVLTVLTAKTEQDAARDDGLVADAARVL 261 >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230 Score = 26.1 bits (57), Expect = 1.8 Identities = 9/48 (18%), Positives = 15/48 (31%) Query: 2 FIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEG 49 V GLGN C+ + G + + A + A+ Sbjct: 42 VSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAP 89 >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 Score = 25.8 bits (55), Expect = 2.5 Identities = 15/90 (16%), Positives = 27/90 (30%) Query: 86 NYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCGKNYKRLRIGIGRPPDTAHIIRH 145 + LV+ D LD T A +G + K L+ G + ++ Sbjct: 44 DNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQT 103 Query: 146 VLGNFSSPERYFLLPIIDNIARSLPLLAKR 175 G F + F + + + L Sbjct: 104 YPGRFPMGKSDFRVHTFEEEIEFVQGLNHS 133 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.144 0.445 Gapped Lambda K H 0.267 0.0560 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 756,175 Number of extensions: 35631 Number of successful extensions: 103 Number of sequences better than 10.0: 1 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 13 Length of query: 189 Length of database: 2,407,596 Length adjustment: 80 Effective length of query: 109 Effective length of database: 1,309,196 Effective search space: 142702364 Effective search space used: 142702364 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 50 (23.4 bits)