BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase
[Candidatus Liberibacter asiaticus str. psy62]
(189 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 189
Score = 388 bits (997), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MFIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIK 60
MFIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIK
Sbjct: 1 MFIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIK 60
Query: 61 PQTFMNLSGQSLLEVMNFYKLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISE 120
PQTFMNLSGQSLLEVMNFYKLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISE
Sbjct: 61 PQTFMNLSGQSLLEVMNFYKLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISE 120
Query: 121 KCGKNYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPIIDNIARSLPLLAKREDVSF 180
KCGKNYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPIIDNIARSLPLLAKREDVSF
Sbjct: 121 KCGKNYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPIIDNIARSLPLLAKREDVSF 180
Query: 181 LNHIVSVRK 189
LNHIVSVRK
Sbjct: 181 LNHIVSVRK 189
>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
Length = 685
Score = 26.9 bits (58), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 34 FFPAWKKKFHAEISEGQLDGLR---TILIKPQTFMNLSGQSLLE--VMNFYKLPNLENYL 88
+ WK +E S+ +LD LR +I+ K +T Q+ L + +F N +
Sbjct: 515 YMAMWKNNKSSEKSQERLDNLRELLSIIEKHETLEGFVLQAPLRENLGSFIPDSNCIQIM 574
Query: 89 VIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCGKNYKRLR-IGIGRPPDTAHI---IR 144
+H L+F T+ + +G SI+E + +RL +GI R H+ I
Sbjct: 575 TLHAAKGLEFDTVFI-SGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLFYTIN 633
Query: 145 HVLGNFSSPERY-------FLLPIID 163
+F+ ERY FLL + D
Sbjct: 634 RRTHDFTRVERYQPSQVSQFLLELYD 659
>gi|255764506|ref|YP_003065297.2| GTP cyclohydrolase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 205
Score = 26.9 bits (58), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 103 LKTGGGDAGHNGLKSISEKCGKNYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPII 162
L+ G D GLK ++ K+YK L G + P T R +F +Y + +I
Sbjct: 29 LRWIGDDPDREGLKDTPDRVIKSYKELFAGYKQIPTTQDTSRF---HFGEASKYQDMVLI 85
Query: 163 DNIA 166
+I+
Sbjct: 86 KDIS 89
>gi|254780785|ref|YP_003065198.1| 30S ribosomal protein S15 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 89
Score = 24.6 bits (52), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 24 MCIDRIHSF-HFFPAWKKKFHAEISEGQLDGLRTILIK 60
+C +RI + F + KK +++I G+L LR+ L+K
Sbjct: 31 VCTERIANLTEHFKSAKKDVNSKIGLGRLISLRSSLLK 68
>gi|254781219|ref|YP_003065632.1| hypothetical protein CLIBASIA_05630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 200
Score = 23.9 bits (50), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 110 AGHNGLKSISEKCGKNYKRLRIGIGRPPDTAHIIRHVLGNFSSPER 155
A NGLK+++E C K P D + + H + ER
Sbjct: 55 AKENGLKTVTEVCPK-----------PKDITYSLSHFIEGLIESER 89
>gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 23.9 bits (50), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 152 SPERYFLLPIIDN-----IARSLPLLAKREDVSFLNHI 184
SP YF LPI+D + + +PL K VS ++ +
Sbjct: 189 SPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGV 226
>gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 133
Score = 22.3 bits (46), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 64 FMNLSGQSLLEVMNFYKLPNLENYLVIHDDLD 95
FM S+ E F + L NYLVI + ++
Sbjct: 26 FMVFEATSVCEAREFCEKELLPNYLVIDESME 57
>gi|254781162|ref|YP_003065575.1| GCN5-related N-acetyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 192
Score = 21.9 bits (45), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 153 PERYFLLPIIDNIARSLPLLAKREDV 178
P R LP++ N+A+++ + + +V
Sbjct: 167 PNRVLFLPLVQNVAQNIKGIVRCREV 192
>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1040
Score = 21.9 bits (45), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 140 AHIIRHVLGNFSSPERYF 157
A +++H L F PE+Y
Sbjct: 447 ATLVKHPLAKFGFPEKYL 464
>gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 266
Score = 21.6 bits (44), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 162 IDNIARSLPLLAKREDVSFLNHI 184
I++I LP +++ E + ++NH+
Sbjct: 217 IESIPLDLPEMSQDEAIKYINHV 239
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.325 0.144 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,037
Number of Sequences: 1233
Number of extensions: 5888
Number of successful extensions: 29
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 13
length of query: 189
length of database: 328,796
effective HSP length: 69
effective length of query: 120
effective length of database: 243,719
effective search space: 29246280
effective search space used: 29246280
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 36 (18.5 bits)