HHsearch alignment for GI: 254780226 and conserved domain: CHL00189
>CHL00189 infB translation initiation factor 2; Provisional.
Probab=96.99 E-value=0.029 Score=35.05 Aligned_cols=112 Identities=22% Similarity=0.382 Sum_probs=68.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG 84 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G 84 (367)
T Consensus 275 VTIMGHVDHGKTsLLD~iR~t---~Va~~EaGGITQhIGAy~V~~~~------~~~~-----~~ITFlDTPG-----H-- 333 (770)
T CHL00189 275 VTILGHVDHGKTTLLDAIRKT---NIAQKEAGGITQKIGAYEVEVPY------KDQN-----QKIVFLDTPG-----H-- 333 (770)
T ss_pred EEEECCCCCCHHHHHHHHHCC---CCCCCCCCCCCCEECEEEEEECC------CCCC-----CEEEEECCCC-----H--
T ss_conf 998577257720378888528---85134567655503529997515------7889-----7589955994-----6--
Q ss_pred CCCHHHHHHHH-----HCCCEEEEEECCCCCCCC--------CCC----------CCCCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 66328999987-----303747885012345421--------134----------57767-3215788988887643322
Q gi|254780226|r 85 EGLGNQFLAHI-----REVDAIIHVLRCFKDENI--------IHV----------EGRID-PINDIETIETELMLSDLER 140 (367)
Q Consensus 85 ~GlGN~FL~~i-----r~aDalihVVdaf~~~~v--------~~~----------~g~~D-P~~Di~~i~~EL~l~dle~ 140 (367)
T Consensus 334 -----eAFt~MRaRGA~vTDIvILVVAA--DDGVmPQTiEAI~hakaA~VPiIVAINKiDkp~an~~rVk~eL~e~--gl 404 (770)
T CHL00189 334 -----EAFSSMRSRGANVTDIAILIVAA--DDGVKPQTIEAINHIQAANVPIIVAINKIDKENANIDRVKQELSKY--NL 404 (770)
T ss_pred -----HHHHHHHHCCCCCCCEEEEEEEC--CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC--CC
T ss_conf -----88999986278666679999965--7885672799999998769988999877458998857899999986--95
Q ss_pred HHHHHH
Q ss_conf 245777
Q gi|254780226|r 141 LERLFE 146 (367)
Q Consensus 141 lek~~~ 146 (367)
T Consensus 405 i~EewG 410 (770)
T CHL00189 405 ISEKWG 410 (770)
T ss_pred CHHHCC
T ss_conf 522237