HHsearch alignment for GI: 254780226 and conserved domain: PRK05306
>PRK05306 infB translation initiation factor IF-2; Validated.
Probab=96.85 E-value=0.041 Score=34.05 Aligned_cols=110 Identities=22% Similarity=0.407 Sum_probs=68.9
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG 84 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G 84 (367)
T Consensus 344 vt~mghvdhgkt~lld~~r~~---~v~~~e~ggitq~iga~~v~~---------~~~-----~~itf~dtpg-----h~- 400 (839)
T PRK05306 344 VTIMGHVDHGKTSLLDAIRKT---KVAAGEAGGITQHIGAYQVET---------ENG-----KKITFLDTPG-----HE- 400 (839)
T ss_pred EEEECCCCCCHHHHHHHHHCC---CCCCCCCCCCCCEEEEEEEEE---------CCC-----CEEEEECCCC-----HH-
T ss_conf 988577467731489998628---753556787552223499995---------699-----8799855885-----58-
Q ss_pred CCCHHHHHHHH-----HCCCEEEEEECCCCCCCC--------CCCC----------CCCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 66328999987-----303747885012345421--------1345----------7767-3215788988887643322
Q gi|254780226|r 85 EGLGNQFLAHI-----REVDAIIHVLRCFKDENI--------IHVE----------GRID-PINDIETIETELMLSDLER 140 (367)
Q Consensus 85 ~GlGN~FL~~i-----r~aDalihVVdaf~~~~v--------~~~~----------g~~D-P~~Di~~i~~EL~l~dle~ 140 (367)
T Consensus 401 -----af-~~mr~rga~~tdi~ilvvaa--ddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~--~~~ 470 (839)
T PRK05306 401 -----AF-TAMRARGAQVTDIVVLVVAA--DDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTE--YGL 470 (839)
T ss_pred -----HH-HHHHHCCCCCCCEEEEEEEC--CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHH--CCC
T ss_conf -----89-99986357654369999977--777567789999999974998899974046788988999999998--498
Q ss_pred HHHHHHH
Q ss_conf 2457777
Q gi|254780226|r 141 LERLFEK 147 (367)
Q Consensus 141 lek~~~k 147 (367)
T Consensus 471 ~~e~~gg 477 (839)
T PRK05306 471 VPEEWGG 477 (839)
T ss_pred CHHHCCC
T ss_conf 6454289