HHsearch alignment for GI: 254780226 and conserved domain: PRK12312
>PRK12312 infB translation initiation factor IF-2; Provisional.
Probab=96.91 E-value=0.01 Score=38.11 Aligned_cols=111 Identities=23% Similarity=0.374 Sum_probs=71.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG 84 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G 84 (367)
T Consensus 120 VtimGHVDHGKTsLLD~iR~t---~V~~~EaGGITQhIGA~~v~----------~~~-----~~itFiDTPG-----H-- 174 (610)
T PRK12312 120 VTIMGHVDHGKTTLLDTIRKT---NVVASEAGGITQHIGAYQVE----------YQG-----KKITFIDTPG-----H-- 174 (610)
T ss_pred EEEECCCCCCHHHHHHHHHCC---CCCCCCCCCCCCEECEEEEE----------ECC-----CEEEEECCCC-----H--
T ss_conf 999677257722588998548---64134677664400449998----------679-----7689972896-----7--
Q ss_pred CCCHHHHHHHHH-----CCCEEEEEECCCCC------CCCCCC----------CCCCC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 663289999873-----03747885012345------421134----------57767-321578898888764332224
Q gi|254780226|r 85 EGLGNQFLAHIR-----EVDAIIHVLRCFKD------ENIIHV----------EGRID-PINDIETIETELMLSDLERLE 142 (367)
Q Consensus 85 ~GlGN~FL~~ir-----~aDalihVVdaf~~------~~v~~~----------~g~~D-P~~Di~~i~~EL~l~dle~le 142 (367)
T Consensus 175 -----eAFt~mR~RGa~vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vpiiVAiNKiDkp~a~~~~v~~~L~~--~g~~~ 247 (610)
T PRK12312 175 -----EAFTEMRARGAKVTDIVILVVAADDGVKPQTEEAIDHAKAANVPIIVFVNKMDKPNANPDRIKNELSK--YDLVP 247 (610)
T ss_pred -----HHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH--HCCCH
T ss_conf -----98999997077654579999975789774269999999975998899850446788987899999987--07667
Q ss_pred HHHHH
Q ss_conf 57777
Q gi|254780226|r 143 RLFEK 147 (367)
Q Consensus 143 k~~~k 147 (367)
T Consensus 248 E~~GG 252 (610)
T PRK12312 248 EEWGG 252 (610)
T ss_pred HHHCC
T ss_conf 88579