HHsearch alignment for GI: 254780226 and conserved domain: TIGR00092
>TIGR00092 TIGR00092 GTP-binding protein YchF; InterPro: IPR004396 This is a family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined . This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and a C-terminal domain composed of a six-stranded half-barrel curved around an alpha helix. The central and C-terminal domains are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; GO: 0005525 GTP binding.
Probab=100.00 E-value=0 Score=931.48 Aligned_cols=367 Identities=57% Similarity=0.905 Sum_probs=354.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEE-EEEEEEEEECCCCCC
Q ss_conf 9824867528887888999987404898736668674488337997685558777642186502-335799985122354
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDL-VPTRMSFVDIAGLVR 79 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~-~p~~i~~iDvaGLv~ 79 (367)
T Consensus 1 Mnl~aGIVGLpNVGKSTlF~AiT~~~~ge~ANYPFaTIePn~g~V~vpd~RLd~La~i~k~~k~evptt~~fvDIAGLvk 80 (390)
T TIGR00092 1 MNLKAGIVGLPNVGKSTLFNAITNLQLGEAANYPFATIEPNTGVVNVPDPRLDKLAEIYKPEKVEVPTTLEFVDIAGLVK 80 (390)
T ss_pred CCCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCEEECCEEEEEEEECCCCC
T ss_conf 98876530068760557999998266777668887651676444625885333477640642041140489986223410
Q ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q ss_conf 322246632899998730374788501234542113457767321578898888764332224-------5777778752
Q gi|254780226|r 80 GASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLE-------RLFEKNKKYR 152 (367)
Q Consensus 80 gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~le-------k~~~k~~k~~ 152 (367)
T Consensus 81 GAS~GeGLGN~FLanIReVd~I~hVVRCF~d~~I~HV~G~VDPV~D~evI~~EL~LaDle~~~~~~E~~~~~i~~~~k~a 160 (390)
T TIGR00092 81 GASKGEGLGNQFLANIREVDAICHVVRCFEDDDIIHVEGKVDPVRDLEVINNELILADLEFVEKILERLEKRIGKVKKKA 160 (390)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 00157872334431032033104788633077358851751762326888888888889999999999999999740423
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCC-CHHHHHHHHHHHH
Q ss_conf 032046777899999889988758741034431326777621023576410100100343011101-0134678778864
Q gi|254780226|r 153 NHKSEEIVLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKK-GNIYTEAVQRLAS 231 (367)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~-~n~~~e~i~~l~~ 231 (367)
T Consensus 161 ~~~DK~~K~E~~lL~~~~~~L~~g~~~~~~~dhl~~~E~~~iks~~lLT~KP~l~~~NVsE~D~~~~~N~~~~~~~e~~~ 240 (390)
T TIGR00092 161 KEGDKEAKEELALLEKILEGLENGQMVRHVGDHLTEEELKIIKSLNLLTAKPILYLANVSEDDLVNLDNKYLLRVKEIAA 240 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCHHHHHHHEEECCCHHCCCCCCCHHHHHHHHHHH
T ss_conf 10037788889999999999863884331023458889999986221210014054316811003678837899999997
Q ss_pred --HCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC-------CCCC-CHHHHHHHHHHHCCCEEEECCCCCCCCCEECCC
Q ss_conf --369840332100246655288426778877538-------8742-289999999987296466105787545401278
Q gi|254780226|r 232 --QQNAEMIIISAAIEAEISQLPEEERALFMEELD-------ISIS-GLELLIRSGYRLLDLITYFTVGPKETRAWTIPR 301 (367)
Q Consensus 232 --~~~~~~i~isa~~E~ei~~l~~ee~~e~l~~~~-------l~~t-gl~~li~~~~~lL~li~~~tvg~~e~~aw~i~~ 301 (367)
T Consensus 241 ~~~~~~~~~~vsa~~E~~L~eL~~~~~~~f~~~lgdtnvsdql~~~sgL~~~I~~~y~~LnL~sfFT~G~~EVRaWti~~ 320 (390)
T TIGR00092 241 KQKPGDKVIPVSAALESELSELDDEERQDFLKELGDTNVSDQLQEVSGLNRVIRAMYKLLNLISFFTCGPQEVRAWTIRK 320 (390)
T ss_pred HCCCCCEEEEEEHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHCCEEEECCCCCHHEECCHHH
T ss_conf 23899728886687888874388642479998605664024331010015899999998287243316861012014020
Q ss_pred CCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCC---CHHHHHHCCCEECCCCEEEECCCCEEEEECC-C
Q ss_conf 6767785110012103483699973688877449---9688887496531576079654988999637-9
Q gi|254780226|r 302 GTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMG---GENAAKEAGKARDEGKEYIVKDGDILHFRFN-V 367 (367)
Q Consensus 302 GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~---~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~fn-v 367 (367)
T Consensus 321 G~~APqAAG~IH~Dfe~gFI~aevi~yedl~~~~PPl~~~~aK~~Gl~r~~GK~Y~v~dgDv~~F~~~~~ 390 (390)
T TIGR00092 321 GTTAPQAAGVIHTDFEKGFIRAEVISYEDLIEMKPPLSEQGAKEAGLIRLEGKDYIVQDGDVLLFRFNAV 390 (390)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEEEECCC
T ss_conf 4751467745301532387368986301233228898857886721355615630311640111220269