HHsearch alignment for GI: 254780226 and conserved domain: TIGR00092

>TIGR00092 TIGR00092 GTP-binding protein YchF; InterPro: IPR004396 This is a family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined . This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and a C-terminal domain composed of a six-stranded half-barrel curved around an alpha helix. The central and C-terminal domains are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; GO: 0005525 GTP binding.
Probab=100.00  E-value=0  Score=931.48  Aligned_cols=367  Identities=57%  Similarity=0.905  Sum_probs=354.9

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEE-EEEEEEEEECCCCCC
Q ss_conf             9824867528887888999987404898736668674488337997685558777642186502-335799985122354
Q gi|254780226|r    1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDL-VPTRMSFVDIAGLVR   79 (367)
Q Consensus         1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~-~p~~i~~iDvaGLv~   79 (367)
T Consensus         1 Mnl~aGIVGLpNVGKSTlF~AiT~~~~ge~ANYPFaTIePn~g~V~vpd~RLd~La~i~k~~k~evptt~~fvDIAGLvk   80 (390)
T TIGR00092         1 MNLKAGIVGLPNVGKSTLFNAITNLQLGEAANYPFATIEPNTGVVNVPDPRLDKLAEIYKPEKVEVPTTLEFVDIAGLVK   80 (390)
T ss_pred             CCCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCEEECCEEEEEEEECCCCC
T ss_conf             98876530068760557999998266777668887651676444625885333477640642041140489986223410


Q ss_pred             CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q ss_conf             322246632899998730374788501234542113457767321578898888764332224-------5777778752
Q gi|254780226|r   80 GASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLE-------RLFEKNKKYR  152 (367)
Q Consensus        80 gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~le-------k~~~k~~k~~  152 (367)
T Consensus        81 GAS~GeGLGN~FLanIReVd~I~hVVRCF~d~~I~HV~G~VDPV~D~evI~~EL~LaDle~~~~~~E~~~~~i~~~~k~a  160 (390)
T TIGR00092        81 GASKGEGLGNQFLANIREVDAICHVVRCFEDDDIIHVEGKVDPVRDLEVINNELILADLEFVEKILERLEKRIGKVKKKA  160 (390)
T ss_pred             CCCCCCCCHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             00157872334431032033104788633077358851751762326888888888889999999999999999740423


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCC-CHHHHHHHHHHHH
Q ss_conf             032046777899999889988758741034431326777621023576410100100343011101-0134678778864
Q gi|254780226|r  153 NHKSEEIVLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKK-GNIYTEAVQRLAS  231 (367)
Q Consensus       153 ~~~~~~~~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~-~n~~~e~i~~l~~  231 (367)
T Consensus       161 ~~~DK~~K~E~~lL~~~~~~L~~g~~~~~~~dhl~~~E~~~iks~~lLT~KP~l~~~NVsE~D~~~~~N~~~~~~~e~~~  240 (390)
T TIGR00092       161 KEGDKEAKEELALLEKILEGLENGQMVRHVGDHLTEEELKIIKSLNLLTAKPILYLANVSEDDLVNLDNKYLLRVKEIAA  240 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCHHHHHHHEEECCCHHCCCCCCCHHHHHHHHHHH
T ss_conf             10037788889999999999863884331023458889999986221210014054316811003678837899999997


Q ss_pred             --HCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC-------CCCC-CHHHHHHHHHHHCCCEEEECCCCCCCCCEECCC
Q ss_conf             --369840332100246655288426778877538-------8742-289999999987296466105787545401278
Q gi|254780226|r  232 --QQNAEMIIISAAIEAEISQLPEEERALFMEELD-------ISIS-GLELLIRSGYRLLDLITYFTVGPKETRAWTIPR  301 (367)
Q Consensus       232 --~~~~~~i~isa~~E~ei~~l~~ee~~e~l~~~~-------l~~t-gl~~li~~~~~lL~li~~~tvg~~e~~aw~i~~  301 (367)
T Consensus       241 ~~~~~~~~~~vsa~~E~~L~eL~~~~~~~f~~~lgdtnvsdql~~~sgL~~~I~~~y~~LnL~sfFT~G~~EVRaWti~~  320 (390)
T TIGR00092       241 KQKPGDKVIPVSAALESELSELDDEERQDFLKELGDTNVSDQLQEVSGLNRVIRAMYKLLNLISFFTCGPQEVRAWTIRK  320 (390)
T ss_pred             HCCCCCEEEEEEHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHCCEEEECCCCCHHEECCHHH
T ss_conf             23899728886687888874388642479998605664024331010015899999998287243316861012014020


Q ss_pred             CCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCC---CHHHHHHCCCEECCCCEEEECCCCEEEEECC-C
Q ss_conf             6767785110012103483699973688877449---9688887496531576079654988999637-9
Q gi|254780226|r  302 GTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMG---GENAAKEAGKARDEGKEYIVKDGDILHFRFN-V  367 (367)
Q Consensus       302 GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~---~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~fn-v  367 (367)
T Consensus       321 G~~APqAAG~IH~Dfe~gFI~aevi~yedl~~~~PPl~~~~aK~~Gl~r~~GK~Y~v~dgDv~~F~~~~~  390 (390)
T TIGR00092       321 GTTAPQAAGVIHTDFEKGFIRAEVISYEDLIEMKPPLSEQGAKEAGLIRLEGKDYIVQDGDVLLFRFNAV  390 (390)
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEEEECCC
T ss_conf             4751467745301532387368986301233228898857886721355615630311640111220269