HHsearch alignment for GI: 254780226 and conserved domain: cd00157
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.93 E-value=0.00027 Score=48.74 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=50.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337-99768555877764218650233579998512235432
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 1 iKi~llGd~~VGKTsli~r~~~~~--f~~~y~-~Ti~~~~~~~~~------------~~~~---~~~l~iwDt~G~e~~- 61 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK--FPTEYV-PTVFDNYSATVT------------VDGK---QVNLGLWDTAGQEEY- 61 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCCCCC-CEEEEEEEEEEE------------ECCE---EEEEEEEECCCCCCC-
T ss_conf 989999999966999999996299--998758-803466689999------------9999---999999989987102-
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 224663289999873037478850123
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
T Consensus 62 ---~~~~~~---~~~~a~~~ilvydit 82 (171)
T cd00157 62 ---DRLRPL---SYPNTDVFLICFSVD 82 (171)
T ss_pred ---CCCHHH---HHHHCCEEEEEEECC
T ss_conf ---413223---444265899999689