HHsearch alignment for GI: 254780226 and conserved domain: cd00876

>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.21  E-value=3.9e-05  Score=54.41  Aligned_cols=146  Identities=18%  Similarity=0.241  Sum_probs=81.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf             48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r    4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK   83 (367)
Q Consensus         4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~   83 (367)
T Consensus         1 Ki~ivG~~~vGKTsli~r~~~~-~-f~~~~~-----pTi~~~~~~~-------~~~~~---~~~~l~i~Dt~g~~~----   59 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKG-T-FVEEYD-----PTIEDSYRKT-------IVVDG---ETYTLDILDTAGQEE----   59 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-----CCEEEEEEEE-------EEECC---EEEEEEEEECCCCHH----
T ss_conf             9999996996799999999619-5-998778-----8300489999-------99766---999999997999623----


Q ss_pred             CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r   84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ  163 (367)
Q Consensus        84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~  163 (367)
T Consensus        60 ~~~~~~---~~~~~a~~~ilvfd~~~~~S-------------f~~------------i~-~~------------------   92 (160)
T cd00876          60 FSAMRD---LYIRQGDGFILVYSITDRES-------------FEE------------IK-GY------------------   92 (160)
T ss_pred             HHHHHH---HHHHHCCEEEEEECCCCHHH-------------HHH------------HH-HH------------------
T ss_conf             557889---99764368999732898789-------------999------------99-99------------------


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf             99998899887587410344313267776210235764101001003430111010134678778864369840332100
Q gi|254780226|r  164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAA  243 (367)
Q Consensus       164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~  243 (367)
T Consensus        93 ----------------------~~-~----i~~~~~~~~~piilvgnK~Dl~~~~-~V~~~e~~~~a~~~~~~y~e~Sak  144 (160)
T cd00876          93 ----------------------RE-Q----ILRVKDDEDIPIVLVGNKCDLENER-QVSKEEGKALAKEWGCPFIETSAK  144 (160)
T ss_pred             ----------------------HH-H----HHHHHCCCCCEEEEEEECCCCHHCC-CCCHHHHHHHHHHCCCEEEEECCC
T ss_conf             ----------------------99-9----9997287886299999745622307-899999999999849979998479


Q ss_pred             HH
Q ss_conf             24
Q gi|254780226|r  244 IE  245 (367)
Q Consensus       244 ~E  245 (367)
T Consensus       145 ~g  146 (160)
T cd00876         145 DN  146 (160)
T ss_pred             CC
T ss_conf             89