HHsearch alignment for GI: 254780226 and conserved domain: cd00876
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.21 E-value=3.9e-05 Score=54.41 Aligned_cols=146 Identities=18% Similarity=0.241 Sum_probs=81.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 1 Ki~ivG~~~vGKTsli~r~~~~-~-f~~~~~-----pTi~~~~~~~-------~~~~~---~~~~l~i~Dt~g~~~---- 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG-T-FVEEYD-----PTIEDSYRKT-------IVVDG---ETYTLDILDTAGQEE---- 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-----CCEEEEEEEE-------EEECC---EEEEEEEEECCCCHH----
T ss_conf 9999996996799999999619-5-998778-----8300489999-------99766---999999997999623----
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
T Consensus 60 ~~~~~~---~~~~~a~~~ilvfd~~~~~S-------------f~~------------i~-~~------------------ 92 (160)
T cd00876 60 FSAMRD---LYIRQGDGFILVYSITDRES-------------FEE------------IK-GY------------------ 92 (160)
T ss_pred HHHHHH---HHHHHCCEEEEEECCCCHHH-------------HHH------------HH-HH------------------
T ss_conf 557889---99764368999732898789-------------999------------99-99------------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 99998899887587410344313267776210235764101001003430111010134678778864369840332100
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAA 243 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~ 243 (367)
T Consensus 93 ----------------------~~-~----i~~~~~~~~~piilvgnK~Dl~~~~-~V~~~e~~~~a~~~~~~y~e~Sak 144 (160)
T cd00876 93 ----------------------RE-Q----ILRVKDDEDIPIVLVGNKCDLENER-QVSKEEGKALAKEWGCPFIETSAK 144 (160)
T ss_pred ----------------------HH-H----HHHHHCCCCCEEEEEEECCCCHHCC-CCCHHHHHHHHHHCCCEEEEECCC
T ss_conf ----------------------99-9----9997287886299999745622307-899999999999849979998479
Q ss_pred HH
Q ss_conf 24
Q gi|254780226|r 244 IE 245 (367)
Q Consensus 244 ~E 245 (367)
T Consensus 145 ~g 146 (160)
T cd00876 145 DN 146 (160)
T ss_pred CC
T ss_conf 89