HHsearch alignment for GI: 254780226 and conserved domain: cd01616
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.89 E-value=1.9e-09 Score=83.40 Aligned_cols=58 Identities=36% Similarity=0.499 Sum_probs=49.7
Q ss_pred EEECCCCCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEEEE
Q ss_conf 66105787545401278676778511001210348369997368887744996888874965315760796549889996
Q gi|254780226|r 285 TYFTVGPKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILHFR 364 (367)
Q Consensus 285 ~~~tvg~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~ 364 (367)
T Consensus 2 ~vftP---~G~~~~lP~GaT~~D~A~~Iht~lg~~~~~a~Vng-------------------~~~~l~~~L~~gd~V~Ii 59 (60)
T cd01616 2 IIFTP---DGSAVELPKGATAMDFALKIHTDLGKGFIGALVNG-------------------QLVDLSYTLQDGDTVSIV 59 (60)
T ss_pred EEECC---CCCEEECCCCCCHHHHHHHHCCCHHHEEEEEEECC-------------------EECCCCCCCCCCCEEEEE
T ss_conf 99899---99879889989899999987636154599999999-------------------996516699999999997