HHsearch alignment for GI: 254780226 and conserved domain: cd01858
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.93 E-value=1.4e-09 Score=84.36 Aligned_cols=56 Identities=30% Similarity=0.456 Sum_probs=43.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf 8248675288878889999874048987366686744883379976855587776421865023357999851223
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL 77 (367)
T Consensus 102 ~i~v~ivG~PNVGKSSlIN~L~g~k~~~vs~~PG~Tr--~~q~i~~~------------------~~i~liDTPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETK--VWQYITLM------------------KRIYLIDCPGV 157 (157)
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEE--EEEEEEEC------------------CCEEEEECCCC
T ss_conf 4699998258853368898872673588659883377--77999968------------------99999969099