HHsearch alignment for GI: 254780226 and conserved domain: cd01871
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.12 E-value=0.0041 Score=40.73 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=52.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 1 siKivlvGd~~VGKTsli~r~~~~-~-f~~~~~-~Ti~~~~~~-~i----------~~~~---~~v~l~iwDtaGqe~~~ 63 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTN-A-FPGEYI-PTVFDNYSA-NV----------MVDG---KPVNLGLWDTAGQEDYD 63 (174)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CEEEEEEEE-EE----------EECC---EEEEEEEECCCCCCCCH
T ss_conf 969999899998699999999739-9-999868-837887679-99----------9999---99999998699972406
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 224663289999873037478850123
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
T Consensus 64 ----~~~~---~~~~~a~~~ilvydi~ 83 (174)
T cd01871 64 ----RLRP---LSYPQTDVFLICFSLV 83 (174)
T ss_pred ----HHHH---HHHHHCCEEEEEEECC
T ss_conf ----7889---9874066899998679