HHsearch alignment for GI: 254780226 and conserved domain: cd01891
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.95 E-value=0.00018 Score=49.97 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=49.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHH-HHH--HHH---CCCCEEEEEEEEEEECCCC
Q ss_conf 4867528887888999987404898736668674488337997685558-777--642---1865023357999851223
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRM-HKL--AEI---AESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~-~~l--~~~---~~~~~~~p~~i~~iDvaGL 77 (367)
T Consensus 4 Nv~iiGHvd~GKTTL~~~Ll~~tg~-~~~-~~~------~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH 75 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGT-FRE-NEE------VEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH 75 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-CCC-CCC------CCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCC
T ss_conf 8999906898799999999997487-630-465------21686147588887287633458999989988999989984
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 54322246632899998730374788501234
Q gi|254780226|r 78 VRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 78 v~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 76 ~d-------F~~~~~~~~~~~D~ailVVdA~~ 100 (194)
T cd01891 76 AD-------FGGEVERVLSMVDGVLLLVDASE 100 (194)
T ss_pred HH-------HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 77-------77789877643446789865378