HHsearch alignment for GI: 254780226 and conserved domain: cd01891

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.95  E-value=0.00018  Score=49.97  Aligned_cols=91  Identities=21%  Similarity=0.256  Sum_probs=49.1

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHH-HHH--HHH---CCCCEEEEEEEEEEECCCC
Q ss_conf             4867528887888999987404898736668674488337997685558-777--642---1865023357999851223
Q gi|254780226|r    4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRM-HKL--AEI---AESKDLVPTRMSFVDIAGL   77 (367)
Q Consensus         4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~-~~l--~~~---~~~~~~~p~~i~~iDvaGL   77 (367)
T Consensus         4 Nv~iiGHvd~GKTTL~~~Ll~~tg~-~~~-~~~------~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH   75 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGT-FRE-NEE------VEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH   75 (194)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCC-CCC-CCC------CCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCC
T ss_conf             8999906898799999999997487-630-465------21686147588887287633458999989988999989984


Q ss_pred             CCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             54322246632899998730374788501234
Q gi|254780226|r   78 VRGASKGEGLGNQFLAHIREVDAIIHVLRCFK  109 (367)
Q Consensus        78 v~gA~~G~GlGN~FL~~ir~aDalihVVdaf~  109 (367)
T Consensus        76 ~d-------F~~~~~~~~~~~D~ailVVdA~~  100 (194)
T cd01891          76 AD-------FGGEVERVLSMVDGVLLLVDASE  100 (194)
T ss_pred             HH-------HHHHHHHHHHHCCEEEEEEECCC
T ss_conf             77-------77789877643446789865378