HHsearch alignment for GI: 254780226 and conserved domain: cd01893

>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.16  E-value=0.0054  Score=39.94  Aligned_cols=81  Identities=21%  Similarity=0.229  Sum_probs=52.1

Q ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf             24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r    3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS   82 (367)
Q Consensus         3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~   82 (367)
T Consensus         1 lKiv~vGd~~VGKTsli~r~~~~~--F~~~~~-~t~~~~~~~~~------------~~~~---~v~l~i~DtaG~e~---   59 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEE--FPENVP-RVLPEITIPAD------------VTPE---RVPTTIVDTSSRPQ---   59 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CCCCCEEEEEE------------ECCE---EEEEEEEECCCCCC---
T ss_conf             989999999989999999998497--888777-63456899999------------8890---99999998998723---


Q ss_pred             CCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf             24663289999873037478850123
Q gi|254780226|r   83 KGEGLGNQFLAHIREVDAIIHVLRCF  108 (367)
Q Consensus        83 ~G~GlGN~FL~~ir~aDalihVVdaf  108 (367)
T Consensus        60 -~~~~---~~~~~~~a~~~ilvydit   81 (166)
T cd01893          60 -DRAN---LAAEIRKANVICLVYSVD   81 (166)
T ss_pred             -CCHH---HHHHHCCCCEEEEEECCC
T ss_conf             -0245---798736898899997089