HHsearch alignment for GI: 254780226 and conserved domain: cd01893
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.16 E-value=0.0054 Score=39.94 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=52.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
T Consensus 1 lKiv~vGd~~VGKTsli~r~~~~~--F~~~~~-~t~~~~~~~~~------------~~~~---~v~l~i~DtaG~e~--- 59 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEE--FPENVP-RVLPEITIPAD------------VTPE---RVPTTIVDTSSRPQ--- 59 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CCCCCEEEEEE------------ECCE---EEEEEEEECCCCCC---
T ss_conf 989999999989999999998497--888777-63456899999------------8890---99999998998723---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 24663289999873037478850123
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
T Consensus 60 -~~~~---~~~~~~~a~~~ilvydit 81 (166)
T cd01893 60 -DRAN---LAAEIRKANVICLVYSVD 81 (166)
T ss_pred -CCHH---HHHHHCCCCEEEEEECCC
T ss_conf -0245---798736898899997089