HHsearch alignment for GI: 254780226 and conserved domain: cd01898
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.96 E-value=4.4e-28 Score=209.14 Aligned_cols=168 Identities=38% Similarity=0.565 Sum_probs=125.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~~-~~~~V~~~pgTT~~~~~g~i~~~~----------------~~~i~~~DtpGi~~~~~~ 64 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN-AKPKIADYPFTTLVPNLGVVRVDD----------------GRSFVVADIPGLIEGASE 64 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHC-CCCEEECCCCCCCCCEEEEEEECC----------------CCEEEEECCCCCCCCCCC
T ss_conf 589989999989999999967-876032566652374477999369----------------856999648864445546
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
T Consensus 65 ~~~l~~~~l~~i~~advil~vvD~~~~---------~~~~~~~~~i~~~l~----------------------------- 106 (170)
T cd01898 65 GKGLGHRFLRHIERTRLLLHVIDLSGD---------DDPVEDYKTIRNELE----------------------------- 106 (170)
T ss_pred CCCHHHHHHHCCCCCCEEEEEEECCCC---------CCHHHHHHHHHHHHH-----------------------------
T ss_conf 622489998613345617999989987---------898999999999999-----------------------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHH-HCCCCCCCCCC
Q ss_conf 99998899887587410344313267776210235764101001003430111010134678778864-36984033210
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLAS-QQNAEMIIISA 242 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~-~~~~~~i~isa 242 (367)
T Consensus 107 ---------------------~~~~----------~~~~kp~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~vi~iSA 153 (170)
T cd01898 107 ---------------------LYNP----------ELLEKPRIVVLNKIDLLD--EEELFELLKELLKELWGKPVFPISA 153 (170)
T ss_pred ---------------------HHCH----------HHHCCCCEEEEEHHHCCC--HHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf ---------------------8274----------440386506776202428--3563899999998569995899975
Q ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 024665528842677887753887422899999999872
Q gi|254780226|r 243 AIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLL 281 (367)
Q Consensus 243 ~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL 281 (367)
T Consensus 154 ~----------------------~g~gi~~L~~~I~~~L 170 (170)
T cd01898 154 L----------------------TGEGLDELLRKLAELL 170 (170)
T ss_pred C----------------------CCCCHHHHHHHHHHHC
T ss_conf 4----------------------7979999999999669