HHsearch alignment for GI: 254780226 and conserved domain: cd01898

>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.96  E-value=4.4e-28  Score=209.14  Aligned_cols=168  Identities=38%  Similarity=0.565  Sum_probs=125.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf             48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r    4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK   83 (367)
Q Consensus         4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~   83 (367)
T Consensus         2 ~VAiiG~pNvGKSTLlN~l~~-~~~~V~~~pgTT~~~~~g~i~~~~----------------~~~i~~~DtpGi~~~~~~   64 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISN-AKPKIADYPFTTLVPNLGVVRVDD----------------GRSFVVADIPGLIEGASE   64 (170)
T ss_pred             CEEEECCCCCCHHHHHHHHHC-CCCEEECCCCCCCCCEEEEEEECC----------------CCEEEEECCCCCCCCCCC
T ss_conf             589989999989999999967-876032566652374477999369----------------856999648864445546


Q ss_pred             CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r   84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ  163 (367)
Q Consensus        84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~  163 (367)
T Consensus        65 ~~~l~~~~l~~i~~advil~vvD~~~~---------~~~~~~~~~i~~~l~-----------------------------  106 (170)
T cd01898          65 GKGLGHRFLRHIERTRLLLHVIDLSGD---------DDPVEDYKTIRNELE-----------------------------  106 (170)
T ss_pred             CCCHHHHHHHCCCCCCEEEEEEECCCC---------CCHHHHHHHHHHHHH-----------------------------
T ss_conf             622489998613345617999989987---------898999999999999-----------------------------


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHH-HCCCCCCCCCC
Q ss_conf             99998899887587410344313267776210235764101001003430111010134678778864-36984033210
Q gi|254780226|r  164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLAS-QQNAEMIIISA  242 (367)
Q Consensus       164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~-~~~~~~i~isa  242 (367)
T Consensus       107 ---------------------~~~~----------~~~~kp~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~vi~iSA  153 (170)
T cd01898         107 ---------------------LYNP----------ELLEKPRIVVLNKIDLLD--EEELFELLKELLKELWGKPVFPISA  153 (170)
T ss_pred             ---------------------HHCH----------HHHCCCCEEEEEHHHCCC--HHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             ---------------------8274----------440386506776202428--3563899999998569995899975


Q ss_pred             HHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf             024665528842677887753887422899999999872
Q gi|254780226|r  243 AIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLL  281 (367)
Q Consensus       243 ~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL  281 (367)
T Consensus       154 ~----------------------~g~gi~~L~~~I~~~L  170 (170)
T cd01898         154 L----------------------TGEGLDELLRKLAELL  170 (170)
T ss_pred             C----------------------CCCCHHHHHHHHHHHC
T ss_conf             4----------------------7979999999999669