HHsearch alignment for GI: 254780226 and conserved domain: cd03218
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.24 E-value=0.088 Score=31.77 Aligned_cols=32 Identities=28% Similarity=0.606 Sum_probs=25.9
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
T Consensus 29 ~~llGpNGAGKSTll~~i~Gl~------------~p~~G~I~~~ 60 (232)
T cd03218 29 VGLLGPNGAGKTTTFYMIVGLV------------KPDSGKILLD 60 (232)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 9999999961999999997799------------9986299999