HHsearch alignment for GI: 254780226 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.05 E-value=0.053 Score=33.28 Aligned_cols=32 Identities=41% Similarity=0.650 Sum_probs=25.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
T Consensus 29 ~gliG~nGaGKSTL~~~i~Gl~------------~p~~G~I~~~ 60 (236)
T cd03219 29 HGLIGPNGAGKTTLFNLISGFL------------RPTSGSVLFD 60 (236)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 9999899973999999996798------------7883189999