HHsearch alignment for GI: 254780226 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.14 E-value=0.051 Score=33.37 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=25.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
T Consensus 29 ~~liG~nGaGKSTLl~~i~Gl~------------~p~~G~I~~~ 60 (222)
T cd03224 29 VALLGRNGAGKTTLLKTIMGLL------------PPRSGSIRFD 60 (222)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 9999999985999999997798------------8996099999