HHsearch alignment for GI: 254780226 and conserved domain: cd03225
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.39 E-value=0.09 Score=31.71 Aligned_cols=33 Identities=42% Similarity=0.514 Sum_probs=25.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
T Consensus 30 ~~iiG~nGaGKSTLlk~i~Gl~------------~p~~G~I~~~g 62 (211)
T cd03225 30 VLIVGPNGSGKSTLLRLLNGLL------------GPTSGEVLVDG 62 (211)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCCCEEECC
T ss_conf 9998899998999999996467------------79888778999