HHsearch alignment for GI: 254780226 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.01 E-value=0.054 Score=33.19 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=25.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 8675288878889999874048987366686744883379976
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
T Consensus 34 ~gllG~NGaGKSTllk~i~Gl~------------~p~~G~i~i 64 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAGLL------------EPDAGFATV 64 (218)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEE
T ss_conf 9999999984999999997797------------789748999