HHsearch alignment for GI: 254780226 and conserved domain: cd03293

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21  E-value=0.028  Score=35.18  Aligned_cols=33  Identities=36%  Similarity=0.551  Sum_probs=26.2

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             486752888788899998740489873666867448833799768
Q gi|254780226|r    4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP   48 (367)
Q Consensus         4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~   48 (367)
T Consensus        32 ~~~iiGpsGsGKSTLl~~i~Gl~~------------p~~G~I~~~   64 (220)
T cd03293          32 FVALVGPSGCGKSTLLRIIAGLER------------PTSGEVLVD   64 (220)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEEC
T ss_conf             999999999579999999975999------------887389999