HHsearch alignment for GI: 254780226 and conserved domain: cd04102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.97 E-value=0.0055 Score=39.89 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=53.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE--EECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 248675288878889999874048987366686744883379--976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE--VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~--~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
T Consensus 1 vKIlllGDsgVGKTSL~~~~~~~~--f~~~~~-~TiG~~v~~k~~~~~~~--------~~~~k~--~~l~lWDtaGqery 67 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQ--VLGRPS-WTVGCSVDVKHHTYKEG--------TPEEKT--FFVELWDVGGSESV 67 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCCCCC-CCEEEEEEEEEEEECCC--------CCCCCE--EEEEEEECCCCHHH
T ss_conf 989999999989999999998398--888888-85036789999993378--------767838--99999989987757
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 22246632899998730374788501234
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 68 ----~sl~~---~yYr~a~gvILVyDvTn 89 (202)
T cd04102 68 ----KSTRA---VFYNQVNGIILVHDLTN 89 (202)
T ss_pred ----HHHHH---HHHCCCCEEEEEEECCC
T ss_conf ----76789---97588989999998949