HHsearch alignment for GI: 254780226 and conserved domain: cd04102

>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.97  E-value=0.0055  Score=39.89  Aligned_cols=87  Identities=15%  Similarity=0.160  Sum_probs=53.9

Q ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE--EECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf             248675288878889999874048987366686744883379--976855587776421865023357999851223543
Q gi|254780226|r    3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE--VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG   80 (367)
Q Consensus         3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~--~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g   80 (367)
T Consensus         1 vKIlllGDsgVGKTSL~~~~~~~~--f~~~~~-~TiG~~v~~k~~~~~~~--------~~~~k~--~~l~lWDtaGqery   67 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQ--VLGRPS-WTVGCSVDVKHHTYKEG--------TPEEKT--FFVELWDVGGSESV   67 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CCCCCC-CCEEEEEEEEEEEECCC--------CCCCCE--EEEEEEECCCCHHH
T ss_conf             989999999989999999998398--888888-85036789999993378--------767838--99999989987757


Q ss_pred             CCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             22246632899998730374788501234
Q gi|254780226|r   81 ASKGEGLGNQFLAHIREVDAIIHVLRCFK  109 (367)
Q Consensus        81 A~~G~GlGN~FL~~ir~aDalihVVdaf~  109 (367)
T Consensus        68 ----~sl~~---~yYr~a~gvILVyDvTn   89 (202)
T cd04102          68 ----KSTRA---VFYNQVNGIILVHDLTN   89 (202)
T ss_pred             ----HHHHH---HHHCCCCEEEEEEECCC
T ss_conf             ----76789---97588989999998949