HHsearch alignment for GI: 254780226 and conserved domain: cd04104

>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.04  E-value=1.2e-05  Score=57.75  Aligned_cols=87  Identities=21%  Similarity=0.339  Sum_probs=49.5

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf             82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r    2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA   81 (367)
Q Consensus         2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA   81 (367)
T Consensus         1 pl~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~eTT~~~~~Y~~p------------~~p--nv~lwDlPG~Gt~~   66 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP------------KFP--NVTLWDLPGIGSTA   66 (197)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCC------------CCC--CCEEECCCCCCCCC
T ss_conf             9179995589986899999986889887775888887467786204799------------999--87697289999876


Q ss_pred             CCCCCCHHHHHHH--HHCCCEEEEEEC
Q ss_conf             2246632899998--730374788501
Q gi|254780226|r   82 SKGEGLGNQFLAH--IREVDAIIHVLR  106 (367)
Q Consensus        82 ~~G~GlGN~FL~~--ir~aDalihVVd  106 (367)
T Consensus        67 ----f~~~~Yl~~~~~~~yD~fiiiss   89 (197)
T cd04104          67 ----FPPDDYLEEMKFSEYDFFIIISS   89 (197)
T ss_pred             ----CCHHHHHHHCCCCCCCEEEEEEC
T ss_conf             ----59899998658554578999838