HHsearch alignment for GI: 254780226 and conserved domain: cd04107
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.02 E-value=0.00011 Score=51.37 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=83.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 24867528887888999987404898736668674488337--9976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG--EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g--~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
T Consensus 1 fKvvllGd~gVGKTsLi~rf~~~-~-F~~~y~-~Tig~df~~k~i~~~------------~~--~~v~l~iwDtaGqe~~ 63 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHG-I-FSQHYK-ATIGVDFALKVIEWD------------PN--TVVRLQLWDIAGQERF 63 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCEEEEEEEEEEC------------CC--EEEEEEEEECCCCCCC
T ss_conf 97999999997899999999829-9-999888-875677899899967------------98--1999999868998322
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV 160 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~ 160 (367)
T Consensus 64 ----~~l~~---~y~~~a~~~ilvydvt~~~S----------f~~-------l~---------~w~~------------- 97 (201)
T cd04107 64 ----GGMTR---VYYRGAVGAIIVFDVTRPST----------FEA-------VL---------KWKA------------- 97 (201)
T ss_pred ----CCCHH---HHCCCCCEEEEEEECCCHHH----------HHH-------HH---------HHHH-------------
T ss_conf ----20037---55557764799982798899----------998-------99---------9999-------------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCC-CCCC
Q ss_conf 789999988998875874103443132677762102357641010010034301110101346787788643698-4033
Q gi|254780226|r 161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNA-EMII 239 (367)
Q Consensus 161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~-~~i~ 239 (367)
T Consensus 98 -----------~i~~--~~~~----~~~~------------~ipiilVgNK~DL~~~~-~v~~ee~~~~a~~~~~~~~~E 147 (201)
T cd04107 98 -----------DLDS--KVTL----PNGE------------PIPCLLLANKCDLKKRL-AKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred -----------HHHH--HHHC----CCCC------------CCCEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCCEEEE
T ss_conf -----------9999--8621----3789------------87189986655641125-689999999999779980999
Q ss_pred CCCHHHHHH
Q ss_conf 210024665
Q gi|254780226|r 240 ISAAIEAEI 248 (367)
Q Consensus 240 isa~~E~ei 248 (367)
T Consensus 148 tSAktg~nV 156 (201)
T cd04107 148 TSAKEGINI 156 (201)
T ss_pred ECCCCCCCH
T ss_conf 779999498