HHsearch alignment for GI: 254780226 and conserved domain: cd04108
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.92 E-value=0.00058 Score=46.50 Aligned_cols=151 Identities=20% Similarity=0.222 Sum_probs=82.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 2 KivlvGd~~VGKTsli~r~~~~--~f~~~y~-----~Tig~d~~~k-----~~~-v~~---~~~~l~iwDtaGqe~---- 61 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKD--VFDKNYK-----ATIGVDFEME-----RFE-ILG---VPFSLQLWDTAGQER---- 61 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHCC--CCCCCCC-----CCCCEEEEEE-----EEE-ECC---EEEEEEEEECCCCCC----
T ss_conf 8999998998989999999639--8899725-----6345058999-----999-999---999999998999974----
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
T Consensus 62 f~~l~~---~y~r~a~~~ilvyDvt~~~S----------f~~-------~~---------~w~~---------------- 96 (170)
T cd04108 62 FKCIAS---TYYRGAQAIIIVFDLTDVAS----------LEH-------TR---------QWLE---------------- 96 (170)
T ss_pred CCCCHH---HHHCCCCEEEEEEECCCHHH----------HHH-------HH---------HHHH----------------
T ss_conf 664437---77327875899997898789----------999-------99---------9999----------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCC-HHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99998899887587410344313267776210235764101001003430111010-13467877886436984033210
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKG-NIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~-n~~~e~i~~l~~~~~~~~i~isa 242 (367)
T Consensus 97 ~-------~~~~----------------------~~~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~~~~~~~~E~SA 147 (170)
T cd04108 97 D-------ALKE----------------------NDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSA 147 (170)
T ss_pred H-------HHHH----------------------CCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCEEEEECC
T ss_conf 9-------9985----------------------0899982999998413798755764489999999877987999855
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
T Consensus 148 k~g~nV 153 (170)
T cd04108 148 LSGENV 153 (170)
T ss_pred CCCCCH
T ss_conf 788187