HHsearch alignment for GI: 254780226 and conserved domain: cd04110
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.07 E-value=0.00015 Score=50.43 Aligned_cols=148 Identities=21% Similarity=0.248 Sum_probs=87.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC
Q ss_conf 824867528887888999987404898736668674488337--997685558777642186502335799985122354
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG--EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR 79 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g--~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~ 79 (367)
T Consensus 6 ~~KIvlvGd~~VGKTSli~r~~~~-~-F~~~~~-~Tig~d~~~k~v~i------------~~~---~v~l~iwDtaGqe- 66 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADN-T-FSGSYI-TTIGVDFKIRTVEI------------NGE---RVKLQIWDTAGQE- 66 (199)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC-C-CCCCCC-CCCCEEEEEEEEEE------------CCE---EEEEEEEECCCCC-
T ss_conf 779999997998889999999509-9-999868-97555878999999------------999---9999999899981-
Q ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 32224663289999873037478850123454211345776732157889888876433222457777787520320467
Q gi|254780226|r 80 GASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEI 159 (367)
Q Consensus 80 gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~ 159 (367)
T Consensus 67 ---~~~~l~~~~---~~~a~~~ilvyDit~~~S-------------f------------~~l~-~w~------------- 101 (199)
T cd04110 67 ---RFRTITSTY---YRGTHGVIVVYDVTNGES-------------F------------VNVK-RWL------------- 101 (199)
T ss_pred ---CCCCCHHHH---HHCCCCCEEEEECCCHHH-------------H------------HHHH-HHH-------------
T ss_conf ---235352666---424654238971798899-------------9------------9999-999-------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 77899999889988758741034431326777621023576410100100343011101013467877886436984033
Q gi|254780226|r 160 VLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMII 239 (367)
Q Consensus 160 ~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~ 239 (367)
T Consensus 102 -----------~~i~~---------------------~--~~~~~~ilVGNK~Dl~~~r-~v~~~e~~~~a~~~~~~f~E 146 (199)
T cd04110 102 -----------QEIEQ---------------------N--CDDVCKVLVGNKNDDPERK-VVETEDAYKFAGQMGISLFE 146 (199)
T ss_pred -----------HHHHH---------------------H--CCCCCEEEEEECCCHHHHC-CCCHHHHHHHHHHCCCEEEE
T ss_conf -----------99997---------------------5--9987579998855447546-99999999999986997999
Q ss_pred CCCHHHHHH
Q ss_conf 210024665
Q gi|254780226|r 240 ISAAIEAEI 248 (367)
Q Consensus 240 isa~~E~ei 248 (367)
T Consensus 147 ~SAktg~nV 155 (199)
T cd04110 147 TSAKENINV 155 (199)
T ss_pred EECCCCCCH
T ss_conf 868999298