HHsearch alignment for GI: 254780226 and conserved domain: cd04115
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.04 E-value=0.00016 Score=50.27 Aligned_cols=144 Identities=24% Similarity=0.278 Sum_probs=83.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE--EECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 248675288878889999874048987366686744883379--976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE--VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~--~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
T Consensus 3 ~Kiv~lGd~~VGKTsli~r~~~~-~-F~~~~~-~Tig~d~~~k~i~v------------~~~---~v~l~iwDtaG~e~~ 64 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAG-R-FPERTE-ATIGVDFRERTVEI------------DGE---RIKVQLWDTAGQERF 64 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-C-CCCCCC-CCEEEEEEEEEEEE------------CCE---EEEEEEEECCCCHHH
T ss_conf 99999997997799999999539-8-899878-86307878999999------------999---999999977885305
Q ss_pred CCCCCCCHHHHH-HHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 222466328999-9873037478850123454211345776732157889888876433222457777787520320467
Q gi|254780226|r 81 ASKGEGLGNQFL-AHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEI 159 (367)
Q Consensus 81 A~~G~GlGN~FL-~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~ 159 (367)
T Consensus 65 ~-------~s~~~~~~~~a~~~ilvydvt~~~S-------------f------------~~~-~~w-------------- 97 (170)
T cd04115 65 R-------KSMVQHYYRNVHAVVFVYDVTNMAS-------------F------------HSL-PSW-------------- 97 (170)
T ss_pred H-------HHHHHHHHCCCCEEEEEEECCCHHH-------------H------------HHH-HHH--------------
T ss_conf 6-------7778998457735799950474767-------------9------------999-999--------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 77899999889988758741034431326777621023576410100100343011101013467877886436984033
Q gi|254780226|r 160 VLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMII 239 (367)
Q Consensus 160 ~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~ 239 (367)
T Consensus 98 -------------~~~---i~---------------~~~~~~~~p~vlVGNK~DL~~~-r~Vs~~e~~~~a~~~~~~~~E 145 (170)
T cd04115 98 -------------IEE---CE---------------QHSLPNEVPRILVGNKCDLREQ-IQVPTDLAQRFADAHSMPLFE 145 (170)
T ss_pred -------------HHH---HH---------------HHCCCCCCCEEEEEECCCCHHH-CCCCHHHHHHHHHHCCCEEEE
T ss_conf -------------999---99---------------8658889979999998213411-787999999999977999999
Q ss_pred CCCH
Q ss_conf 2100
Q gi|254780226|r 240 ISAA 243 (367)
Q Consensus 240 isa~ 243 (367)
T Consensus 146 ~SAK 149 (170)
T cd04115 146 TSAK 149 (170)
T ss_pred ECCC
T ss_conf 8889