HHsearch alignment for GI: 254780226 and conserved domain: cd04122
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.07 E-value=7.2e-05 Score=52.59 Aligned_cols=149 Identities=21% Similarity=0.303 Sum_probs=86.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE--EECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC
Q ss_conf 8248675288878889999874048987366686744883379--97685558777642186502335799985122354
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE--VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR 79 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~--~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~ 79 (367)
T Consensus 2 ~~KivlvGd~~VGKTsli~r~~~~--~f~~~~~-~Tig~~~~~k~i~~------------~~~---~~~l~iwDtaG~e- 62 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEK--KFMADCP-HTIGVEFGTRIIEV------------NGQ---KIKLQIWDTAGQE- 62 (166)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC--CCCCCCC-CCCCEEEEEEEEEE------------CCE---EEEEEEEECCCCC-
T ss_conf 499999999995799999999129--8899999-97446889999999------------999---9999999899985-
Q ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 32224663289999873037478850123454211345776732157889888876433222457777787520320467
Q gi|254780226|r 80 GASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEI 159 (367)
Q Consensus 80 gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~ 159 (367)
T Consensus 63 ---~~~~~~~---~~~~~a~~~ilvydvt~~~-------S------f------------~~l~-~w-------------- 96 (166)
T cd04122 63 ---RFRAVTR---SYYRGAAGALMVYDITRRS-------T------Y------------NHLS-SW-------------- 96 (166)
T ss_pred ---CCCCCCH---HHEECCCEEEEEECCCCHH-------H------H------------HHHH-HH--------------
T ss_conf ---4442521---1143154659972587476-------7------9------------9999-99--------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 77899999889988758741034431326777621023576410100100343011101013467877886436984033
Q gi|254780226|r 160 VLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMII 239 (367)
Q Consensus 160 ~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~ 239 (367)
T Consensus 97 -------------~~~---~~~~-----------~~-----~~~~iilVGNK~DL~~~r-~V~~~e~~~~a~~~~~~~~E 143 (166)
T cd04122 97 -------------LTD---ARNL-----------TN-----PNTVIFLIGNKADLEAQR-DVTYEEAKQFADENGLLFLE 143 (166)
T ss_pred -------------HHH---HHHH-----------CC-----CCCEEEECCCCCCHHHCC-CCCHHHHHHHHHHCCCEEEE
T ss_conf -------------999---9985-----------69-----997587034015744438-99999999999986998999
Q ss_pred CCCHHHHHH
Q ss_conf 210024665
Q gi|254780226|r 240 ISAAIEAEI 248 (367)
Q Consensus 240 isa~~E~ei 248 (367)
T Consensus 144 ~SAk~g~nV 152 (166)
T cd04122 144 CSAKTGENV 152 (166)
T ss_pred ECCCCCCCH
T ss_conf 865878088