HHsearch alignment for GI: 254780226 and conserved domain: cd04124

>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.16  E-value=7e-05  Score=52.66  Aligned_cols=146  Identities=19%  Similarity=0.190  Sum_probs=84.8

Q ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf             24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r    3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS   82 (367)
Q Consensus         3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~   82 (367)
T Consensus         1 iKivllGd~~VGKTsli~r~~~~-~-f~~~~~-~Tig~~~~~~~~----------~~~~~---~~~l~iwDtaG~----e   60 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMD-G-YEPQQL-STYALTLYKHNA----------KFEGK---TILVDFWDTAGQ----E   60 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCCC----C
T ss_conf             98999998996789999999809-7-799726-654157999999----------99999---999999979998----4


Q ss_pred             CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r   83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL  162 (367)
Q Consensus        83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~  162 (367)
T Consensus        61 ~f~~~~~~---y~~~a~~~ilvfDit~~~S-------------f------------~~~~-~w~----------------   95 (161)
T cd04124          61 RFQTMHAS---YYHKAHACILVFDVTRKIT-------------Y------------KNLS-KWY----------------   95 (161)
T ss_pred             CCCHHHHH---HHCCCCEEEEEEECCCHHH-------------H------------HHHH-HHH----------------
T ss_conf             34324699---7356876799996897788-------------9------------9999-999----------------


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r  163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA  242 (367)
Q Consensus       163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa  242 (367)
T Consensus        96 --------~~i~~------~----~-------------~~~p~ilVgNK~DL~~~---~-~~~~~~~a~~~~~~f~etSA  140 (161)
T cd04124          96 --------EELRE------Y----R-------------PEIPCIVVANKIDLDPS---V-TQKKFNFAEKHNLPLYYVSA  140 (161)
T ss_pred             --------HHHHH------H----C-------------CCCCEEEEEECCCCCCH---H-HHHHHHHHHHCCCEEEEEEC
T ss_conf             --------99998------6----8-------------69989999997117742---5-89999999986991999907


Q ss_pred             HHHHHH
Q ss_conf             024665
Q gi|254780226|r  243 AIEAEI  248 (367)
Q Consensus       243 ~~E~ei  248 (367)
T Consensus       141 k~g~nV  146 (161)
T cd04124         141 ADGTNV  146 (161)
T ss_pred             CCCCCH
T ss_conf             838097