HHsearch alignment for GI: 254780226 and conserved domain: cd04124
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.16 E-value=7e-05 Score=52.66 Aligned_cols=146 Identities=19% Similarity=0.190 Sum_probs=84.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
T Consensus 1 iKivllGd~~VGKTsli~r~~~~-~-f~~~~~-~Tig~~~~~~~~----------~~~~~---~~~l~iwDtaG~----e 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMD-G-YEPQQL-STYALTLYKHNA----------KFEGK---TILVDFWDTAGQ----E 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCCC----C
T ss_conf 98999998996789999999809-7-799726-654157999999----------99999---999999979998----4
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
T Consensus 61 ~f~~~~~~---y~~~a~~~ilvfDit~~~S-------------f------------~~~~-~w~---------------- 95 (161)
T cd04124 61 RFQTMHAS---YYHKAHACILVFDVTRKIT-------------Y------------KNLS-KWY---------------- 95 (161)
T ss_pred CCCHHHHH---HHCCCCEEEEEEECCCHHH-------------H------------HHHH-HHH----------------
T ss_conf 34324699---7356876799996897788-------------9------------9999-999----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
T Consensus 96 --------~~i~~------~----~-------------~~~p~ilVgNK~DL~~~---~-~~~~~~~a~~~~~~f~etSA 140 (161)
T cd04124 96 --------EELRE------Y----R-------------PEIPCIVVANKIDLDPS---V-TQKKFNFAEKHNLPLYYVSA 140 (161)
T ss_pred --------HHHHH------H----C-------------CCCCEEEEEECCCCCCH---H-HHHHHHHHHHCCCEEEEEEC
T ss_conf --------99998------6----8-------------69989999997117742---5-89999999986991999907
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
T Consensus 141 k~g~nV 146 (161)
T cd04124 141 ADGTNV 146 (161)
T ss_pred CCCCCH
T ss_conf 838097