HHsearch alignment for GI: 254780226 and conserved domain: cd04125

>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.17  E-value=8.9e-05  Score=51.99  Aligned_cols=150  Identities=21%  Similarity=0.201  Sum_probs=85.3

Q ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf             24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r    3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS   82 (367)
Q Consensus         3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~   82 (367)
T Consensus         1 ~KivvvGd~~VGKTsli~r~~~~-~-f~~~~~-~Tig~~~~~k~i----------~~~~~---~~~l~iwDtaG~e~---   61 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTED-E-FSESTK-STIGVDFKIKTV----------YIENK---IIKLQIWDTNGQER---   61 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCCCHH---
T ss_conf             97999999997899999999519-6-899868-865403579999----------99999---99999998999710---


Q ss_pred             CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r   83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL  162 (367)
Q Consensus        83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~  162 (367)
T Consensus        62 -~~~l~---~~~~~~a~~~ilvydit~~~S-------------f~~------------l~-~w~~---------------   96 (188)
T cd04125          62 -FRSLN---NSYYRGAHGYLLVYDVTDQES-------------FEN------------LK-FWIN---------------   96 (188)
T ss_pred             -HHHHH---HHHHCCCCEEEEEECCCCHHH-------------HHH------------HH-HHHH---------------
T ss_conf             -45789---998637867999803898789-------------999------------99-9999---------------


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r  163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA  242 (367)
Q Consensus       163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa  242 (367)
T Consensus        97 ---------~i~~------~------------~----~~~~~iilvgNK~DL~~~-r~V~~~e~~~~a~~~~~~~~E~SA  144 (188)
T cd04125          97 ---------EINR------Y------------A----RENVIKVIVANKSDLVNN-KVVDSNIAKSFCDSLNIPFFETSA  144 (188)
T ss_pred             ---------HHHH------H------------C----CCCCCEEEECCHHHHHHC-CCCCHHHHHHHHHHCCCEEEEECC
T ss_conf             ---------9998------7------------8----986624510013447660-679999999999986998999747


Q ss_pred             HHHHHH
Q ss_conf             024665
Q gi|254780226|r  243 AIEAEI  248 (367)
Q Consensus       243 ~~E~ei  248 (367)
T Consensus       145 ktg~nV  150 (188)
T cd04125         145 KQSINV  150 (188)
T ss_pred             CCCCCH
T ss_conf             889098