HHsearch alignment for GI: 254780226 and conserved domain: cd04133
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.67 E-value=0.00079 Score=45.59 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=51.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
T Consensus 2 iKivllGd~~VGKTsL~~rf~~~-~F-~~~~~-----pTi~~~~~~~------i-~v~~---~~~~l~iwDTaG~e~--- 61 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSN-KF-PTDYI-----PTVFDNFSAN------V-SVDG---NTVNLGLWDTAGQED--- 61 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-CC-CCCCC-----CCEEEEEEEE------E-EECC---EEEEEEEEECCCCCC---
T ss_conf 79999899997799999999659-89-99867-----8535899999------9-9999---899999997999765---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECC
Q ss_conf 2466328999987303747885012
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRC 107 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVda 107 (367)
T Consensus 62 -~~~l~~~~---y~~a~~~ilvydi 82 (176)
T cd04133 62 -YNRLRPLS---YRGADVFVLAFSL 82 (176)
T ss_pred -CCHHHHHH---HCCCCEEEEEEEC
T ss_conf -42468987---2678757999978