HHsearch alignment for GI: 254780226 and conserved domain: cd04134
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.10 E-value=0.055 Score=33.17 Aligned_cols=81 Identities=25% Similarity=0.250 Sum_probs=50.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~--F~~~y~-~Ti----~~~~~~~-------~~v~~~---~v~l~iwDTaGqe~~--- 61 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGY--FPQVYE-PTV----FENYVHD-------IFVDGL---HIELSLWDTAGQEEF--- 61 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCC-CCE----EEEEEEE-------EEECCE---EEEEEEEECCCCCCC---
T ss_conf 89999979976999999997099--999868-837----8999999-------999999---999999847785000---
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 4663289999873037478850123
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
T Consensus 62 -~~i~~~---~y~~a~~~ilvydi~ 82 (189)
T cd04134 62 -DRLRSL---SYADTDVIMLCFSVD 82 (189)
T ss_pred -CHHHHH---HHCCCCEEEEEEECC
T ss_conf -035567---643786459999789