HHsearch alignment for GI: 254780226 and conserved domain: cd04146
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.23 E-value=6.3e-05 Score=53.00 Aligned_cols=147 Identities=22% Similarity=0.306 Sum_probs=85.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 4867528887888999987404898736668674488337-997685558777642186502335799985122354322
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
T Consensus 1 Kiv~vGd~~VGKTsli~rf~~~--~f~~~y~-~T~~~~~~~~~~------------v~~~---~~~l~iwDtaG~e~~~~ 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTK--RFIGEYD-PNLESLYSRQVT------------IDGE---QVSLEILDTAGQQQADT 62 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHC--CCCCCCC-CCCCCEEEEEEE------------ECCE---EEEEEEEECCCCCCCCH
T ss_conf 9999998997789999999749--8998759-955630579999------------9999---99999992898501220
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
T Consensus 63 ------~~~~~~~~~a~~~ilvydit~~~S-------------f------------~~~~-~~----------------- 93 (165)
T cd04146 63 ------EQLERSIRWADGFVLVYSITDRSS-------------F------------DEIS-QL----------------- 93 (165)
T ss_pred ------HHHHHHCCCCCEEEEEEECCCHHH-------------H------------HHHH-HH-----------------
T ss_conf ------125543045878999986588899-------------9------------9999-99-----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
T Consensus 94 -------~~~i~~------------------~~~~--~~~~piilVGNK~DL~~~r-~Vs~ee~~~~a~~~~~~f~E~SA 145 (165)
T cd04146 94 -------KQLIRE------------------IKKR--DREIPVILVGNKADLLHYR-QVSTEEGEKLASELGCLFFEVSA 145 (165)
T ss_pred -------HHHHHH------------------HHCC--CCCCEEEEECCCCCCCCCC-CCCHHHHHHHHHHCCCEEEEEEC
T ss_conf -------999999------------------8466--9995399844554521036-77999999999981998999752
Q ss_pred HHH
Q ss_conf 024
Q gi|254780226|r 243 AIE 245 (367)
Q Consensus 243 ~~E 245 (367)
T Consensus 146 k~~ 148 (165)
T cd04146 146 AED 148 (165)
T ss_pred CCC
T ss_conf 087