HHsearch alignment for GI: 254780226 and conserved domain: cd04146

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.23  E-value=6.3e-05  Score=53.00  Aligned_cols=147  Identities=22%  Similarity=0.306  Sum_probs=85.7

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf             4867528887888999987404898736668674488337-997685558777642186502335799985122354322
Q gi|254780226|r    4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS   82 (367)
Q Consensus         4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~   82 (367)
T Consensus         1 Kiv~vGd~~VGKTsli~rf~~~--~f~~~y~-~T~~~~~~~~~~------------v~~~---~~~l~iwDtaG~e~~~~   62 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTK--RFIGEYD-PNLESLYSRQVT------------IDGE---QVSLEILDTAGQQQADT   62 (165)
T ss_pred             CEEEECCCCCCHHHHHHHHHHC--CCCCCCC-CCCCCEEEEEEE------------ECCE---EEEEEEEECCCCCCCCH
T ss_conf             9999998997789999999749--8998759-955630579999------------9999---99999992898501220


Q ss_pred             CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r   83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL  162 (367)
Q Consensus        83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~  162 (367)
T Consensus        63 ------~~~~~~~~~a~~~ilvydit~~~S-------------f------------~~~~-~~-----------------   93 (165)
T cd04146          63 ------EQLERSIRWADGFVLVYSITDRSS-------------F------------DEIS-QL-----------------   93 (165)
T ss_pred             ------HHHHHHCCCCCEEEEEEECCCHHH-------------H------------HHHH-HH-----------------
T ss_conf             ------125543045878999986588899-------------9------------9999-99-----------------


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r  163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA  242 (367)
Q Consensus       163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa  242 (367)
T Consensus        94 -------~~~i~~------------------~~~~--~~~~piilVGNK~DL~~~r-~Vs~ee~~~~a~~~~~~f~E~SA  145 (165)
T cd04146          94 -------KQLIRE------------------IKKR--DREIPVILVGNKADLLHYR-QVSTEEGEKLASELGCLFFEVSA  145 (165)
T ss_pred             -------HHHHHH------------------HHCC--CCCCEEEEECCCCCCCCCC-CCCHHHHHHHHHHCCCEEEEEEC
T ss_conf             -------999999------------------8466--9995399844554521036-77999999999981998999752


Q ss_pred             HHH
Q ss_conf             024
Q gi|254780226|r  243 AIE  245 (367)
Q Consensus       243 ~~E  245 (367)
T Consensus       146 k~~  148 (165)
T cd04146         146 AED  148 (165)
T ss_pred             CCC
T ss_conf             087