HHsearch alignment for GI: 254780226 and conserved domain: cd04150
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.69 E-value=3.1e-07 Score=68.50 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=53.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
T Consensus 1 ~KililG~~~sGKTsll~~l~~~-~~-~~~~--pT~g~~~~~~~~~-----------------~~~l~iwD~~G----~~ 55 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLG-EI-VTTI--PTIGFNVETVEYK-----------------NISFTVWDVGG----QD 55 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC-CC-CCCC--CCCCCCEEEEEEC-----------------CEEEEEEECCC----CC
T ss_conf 99999999999989999999729-96-7758--9687017999989-----------------89999997899----72
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 246632899998730374788501234
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 56 ~~r~l~~~Y---~~~a~~iI~VvD~sd 79 (159)
T cd04150 56 KIRPLWRHY---FQNTQGLIFVVDSND 79 (159)
T ss_pred CCCHHHHHH---CCCCCEEEEEEECCC
T ss_conf 146567864---768738999997777