HHsearch alignment for GI: 254780226 and conserved domain: cd04151
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.58 E-value=1e-06 Score=65.10 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=51.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 1 Kil~lG~~~~GKTsll~~~~~-~~~--~~~-~pTig~~~~~i~~~-----------------~~~~~iwD~~G----~e~ 55 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL-GEV--VTT-IPTIGFNVETVTYK-----------------NLKFQVWDLGG----QTS 55 (158)
T ss_pred CEEEECCCCCCHHHHHHHHHC-CCC--CCC-CCCCCCCEEEEEEC-----------------CEEEEEEECCC----CCC
T ss_conf 999999999989999999970-996--775-78488246999989-----------------88999996798----624
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 56 ~r~~~~~y---~~~~~~ii~VvD~sd 78 (158)
T cd04151 56 IRPYWRCY---YSNTDAIIYVVDSTD 78 (158)
T ss_pred CCHHHHHH---CCCCCEEEEEEECCC
T ss_conf 46278874---667889999974578