HHsearch alignment for GI: 254780226 and conserved domain: cd04152

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.59  E-value=3.7e-06  Score=61.31  Aligned_cols=85  Identities=24%  Similarity=0.332  Sum_probs=53.4

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf             82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r    2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA   81 (367)
Q Consensus         2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA   81 (367)
T Consensus         3 ~~kIvilG~~~~GKTsil~r~~~~-~f-~~~~--pTiG~~~~~~~~~---------~~~~~---~v~l~iwDtaG----q   62 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFN-EF-VNTV--PTKGFNTEKIKVS---------LGNSK---GITFHFWDVGG----Q   62 (183)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHCC-CC-CCCC--CCCCEEEEEEEEE---------CCCCC---EEEEEEEECCC----C
T ss_conf             799999999999889999999649-86-7768--7035578999996---------16786---67999997898----7


Q ss_pred             CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             2246632899998730374788501234
Q gi|254780226|r   82 SKGEGLGNQFLAHIREVDAIIHVLRCFK  109 (367)
Q Consensus        82 ~~G~GlGN~FL~~ir~aDalihVVdaf~  109 (367)
T Consensus        63 e~~r~l~~~Y---~r~a~g~i~V~D~td   87 (183)
T cd04152          63 EKLRPLWKSY---TRCTDGIVFVVDSVD   87 (183)
T ss_pred             CCCCEEHHHH---HCCCCEEEEEEECCC
T ss_conf             3451008767---467867899996776