HHsearch alignment for GI: 254780226 and conserved domain: cd04152
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.59 E-value=3.7e-06 Score=61.31 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=53.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 3 ~~kIvilG~~~~GKTsil~r~~~~-~f-~~~~--pTiG~~~~~~~~~---------~~~~~---~v~l~iwDtaG----q 62 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFN-EF-VNTV--PTKGFNTEKIKVS---------LGNSK---GITFHFWDVGG----Q 62 (183)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC-CC-CCCC--CCCCEEEEEEEEE---------CCCCC---EEEEEEEECCC----C
T ss_conf 799999999999889999999649-86-7768--7035578999996---------16786---67999997898----7
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 63 e~~r~l~~~Y---~r~a~g~i~V~D~td 87 (183)
T cd04152 63 EKLRPLWKSY---TRCTDGIVFVVDSVD 87 (183)
T ss_pred CCCCEEHHHH---HCCCCEEEEEEECCC
T ss_conf 3451008767---467867899996776