HHsearch alignment for GI: 254780226 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.70 E-value=2.8e-07 Score=68.81 Aligned_cols=80 Identities=26% Similarity=0.326 Sum_probs=52.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 15 ~~KililG~~~sGKTsil~~l~~~~~--~~~--~pT~G~~~~~i~~~-----------------~~~~~iwD~~G----~ 69 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEV--VHT--SPTIGSNVEEIVYK-----------------NIRFLMWDIGG----Q 69 (174)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC--CCC--CCCCCCCEEEEEEC-----------------CEEEEEEECCC----C
T ss_conf 79999998999988999999973992--771--67236046999978-----------------88999998999----8
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 70 e~~~~~~~~y---~~~a~~ii~VvD~sd 94 (174)
T cd04153 70 ESLRSSWNTY---YTNTDAVILVIDSTD 94 (174)
T ss_pred CCCCCHHHHH---HCCCCEEEEEEECCC
T ss_conf 6566226777---057753799997678