HHsearch alignment for GI: 254780226 and conserved domain: cd04153

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.70  E-value=2.8e-07  Score=68.81  Aligned_cols=80  Identities=26%  Similarity=0.326  Sum_probs=52.5

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf             82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r    2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA   81 (367)
Q Consensus         2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA   81 (367)
T Consensus        15 ~~KililG~~~sGKTsil~~l~~~~~--~~~--~pT~G~~~~~i~~~-----------------~~~~~iwD~~G----~   69 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEV--VHT--SPTIGSNVEEIVYK-----------------NIRFLMWDIGG----Q   69 (174)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHCCCC--CCC--CCCCCCCEEEEEEC-----------------CEEEEEEECCC----C
T ss_conf             79999998999988999999973992--771--67236046999978-----------------88999998999----8


Q ss_pred             CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             2246632899998730374788501234
Q gi|254780226|r   82 SKGEGLGNQFLAHIREVDAIIHVLRCFK  109 (367)
Q Consensus        82 ~~G~GlGN~FL~~ir~aDalihVVdaf~  109 (367)
T Consensus        70 e~~~~~~~~y---~~~a~~ii~VvD~sd   94 (174)
T cd04153          70 ESLRSSWNTY---YTNTDAVILVIDSTD   94 (174)
T ss_pred             CCCCCHHHHH---HCCCCEEEEEEECCC
T ss_conf             6566226777---057753799997678