HHsearch alignment for GI: 254780226 and conserved domain: cd04156
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.82 E-value=5.8e-08 Score=73.45 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=51.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 1 KivilG~~~~GKTsil~r~~~~~~--~~~~--pTig~~~~~~~~~--------------~--~~~l~iwD~~G~----e~ 56 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL--VTTI--PTVGFNVEMLQLE--------------K--HLSLTVWDVGGQ----EK 56 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCC--CCCC--CCCCEEEEEEEEC--------------C--EEEEEEEECCCC----CC
T ss_conf 999999999999999999956987--7757--7615038999989--------------9--899999978986----24
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 57 ~~~~~~~y---~~~a~~iI~V~D~td 79 (160)
T cd04156 57 MRTVWKCY---LENTDGLVYVVDSSD 79 (160)
T ss_pred CCHHHHHH---HCCCCEEEEEEECCC
T ss_conf 74158877---456778999985686