HHsearch alignment for GI: 254780226 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.07 E-value=2.4e-05 Score=55.77 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=51.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 1 kIlilGLd~aGKTTil~~l~~-~~~-~~~~-~PT~Gf~~~~i~~~-----------------~~~l~~wDlgG----q~~ 56 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSS-ERS-LESV-VPTTGFNSVAIPTQ-----------------DAIMELLEIGG----SQN 56 (164)
T ss_pred CEEEECCCCCCHHHHHHHHHC-CCC-CCCC-CCCCCCCEEEEEEC-----------------CEEEEEEECCC----HHH
T ss_conf 999996799989999999816-998-7653-56327746999989-----------------99999985375----288
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 57 ~R~~W~~Y---~~~~~gIIfVVDssD 79 (164)
T cd04162 57 LRKYWKRY---LSGSQGLIFVVDSAD 79 (164)
T ss_pred HHHHHHHH---HHCCCEEEEEEECCC
T ss_conf 86569987---117758999995688