HHsearch alignment for GI: 254780226 and conserved domain: cd04163
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.83 E-value=1.1e-19 Score=152.38 Aligned_cols=91 Identities=30% Similarity=0.404 Sum_probs=74.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 3 ~~~V~ivG~pN~GKSsL~N~L~~~~~a~vs~~~gtTr~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD-----------------AQIIFVDTPGIHKPK 65 (168)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCEEEEEECC-----------------EEEEEEECCCCCCCH
T ss_conf 868999999999999999999589703323889826344236898499-----------------789999589866514
Q ss_pred CC-CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 22-46632899998730374788501234
Q gi|254780226|r 82 SK-GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~-G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 66 ~~~~~~~~~~~~~~l~~~D~il~vvD~~~ 94 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASE 94 (168)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 56778999999986513655899997898