HHsearch alignment for GI: 254780226 and conserved domain: cd04173

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=96.15  E-value=0.072  Score=32.36  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf             24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r    3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS   82 (367)
Q Consensus         3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~   82 (367)
T Consensus         2 ~KiVlvGD~~VGKTsLl~~f~~~~--F~~~y-----~pTi~~~~~~~-------~~vd~~---~v~L~iWDTAGqE~y--   62 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDA--YPGSY-----VPTVFENYTAS-------FEIDKR---RIELNMWDTSGSSYY--   62 (222)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CCCCC-----CCCEEEEEEEE-------EEECCE---EEEEEEECCCCCCHH--
T ss_conf             099998989989899999996399--99984-----78458778999-------999999---999999768885034--


Q ss_pred             CCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf             24663289999873037478850123
Q gi|254780226|r   83 KGEGLGNQFLAHIREVDAIIHVLRCF  108 (367)
Q Consensus        83 ~G~GlGN~FL~~ir~aDalihVVdaf  108 (367)
T Consensus        63 --~~lr~---~yyr~a~~~llvfdit   83 (222)
T cd04173          63 --DNVRP---LAYPDSDAVLICFDIS   83 (222)
T ss_pred             --HHHHH---HHCCCCCEEEEEEECC
T ss_conf             --55678---7503698999998389