HHsearch alignment for GI: 254780226 and conserved domain: pfam04670
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=96.49 E-value=0.016 Score=36.70 Aligned_cols=82 Identities=20% Similarity=0.175 Sum_probs=51.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 4867528887888999987404898-736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASA-QAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~-~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
T Consensus 1 KiLLMG~~~sGKTSi~~vIF~~~~p~dT~-~L~~T~~ve~~~v~~~~--------------~--l~l~iwD~pGq~---- 59 (230)
T pfam04670 1 KVLLMGLRGSGKSSMRSIIFSNYSPRDTL-RLGATIDVEQSHVRFLG--------------N--LTLNLWDCPGQD---- 59 (230)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCHHHHC-CCCCCCCEEEEEEECCC--------------C--CEEEEEECCCCH----
T ss_conf 97875689998777699986799821412-02577776778774168--------------7--368999769835----
Q ss_pred CCCCCHHHH----HHHHHCCCEEEEEECCC
Q ss_conf 246632899----99873037478850123
Q gi|254780226|r 83 KGEGLGNQF----LAHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~F----L~~ir~aDalihVVdaf 108 (367)
T Consensus 60 --~f~e~~~~~~~e~if~~v~~lIyV~D~q 87 (230)
T pfam04670 60 --DFMENYLTRQKEHIFSNVGVLIYVFDVE 87 (230)
T ss_pred --HHHHHHCCCCHHHHHHCCCEEEEEEECC
T ss_conf --3544120022354764478899999688