HHsearch alignment for GI: 254780226 and conserved domain: pfam05049
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=97.67 E-value=0.00061 Score=46.33 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=57.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 35 ~lnIavtGesG~GkSsfINalRg~g~e~~~aA~-------tGvvetT-----~~~~~Y~hp~~pn--V~lwDLPG~gt~~ 100 (375)
T pfam05049 35 PLKIAVTGDSGNGKSSFINALRGIGHEEDGSAP-------TGVVETT-----MKRTPYSHPHFPN--VVLWDLPGLGATN 100 (375)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC-------CCCEEEC-----CCCCCCCCCCCCC--EEEECCCCCCCCC
T ss_conf 247998548998678999987478987777687-------6876632-----6755678999998--0796289999899
Q ss_pred CCCCCCHHHHHHH--HHCCCEEEEEECC
Q ss_conf 2246632899998--7303747885012
Q gi|254780226|r 82 SKGEGLGNQFLAH--IREVDAIIHVLRC 107 (367)
Q Consensus 82 ~~G~GlGN~FL~~--ir~aDalihVVda 107 (367)
T Consensus 101 f----~~~~Yl~~~~f~~yDfFiiiss~ 124 (375)
T pfam05049 101 F----TVETYLEEMKFSEYDFFIIISSE 124 (375)
T ss_pred C----CHHHHHHHCCCCCCCEEEEEECC
T ss_conf 8----98999987485647789999677