HHsearch alignment for GI: 254780226 and conserved domain: smart00175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.35 E-value=1.9e-05 Score=56.49 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=82.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~-~f-~~~~~-~Ti~~~~~~~~i----------~~~~~---~~~l~iwDt~G~e~--- 61 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG-KF-SEQYK-STIGVDFKTKTI----------EVDGK---RVKLQIWDTAGQER--- 61 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-CC-CCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCCCHH---
T ss_conf 98999998997799999999419-99-99868-845666677999----------99999---99999996799446---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
T Consensus 62 -~~~l~---~~~~~~~~~~ilvfdi~~~~S----------f~---------------~i~-~w~---------------- 95 (164)
T smart00175 62 -FRSIT---SSYYRGAVGALLVYDITNRES----------FE---------------NLK-NWL---------------- 95 (164)
T ss_pred -HHHHH---HHHHCCCCEEEEECCCCCHHH----------HH---------------HHH-HHH----------------
T ss_conf -64779---988336653688436899899----------99---------------999-999----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
T Consensus 96 ----~~----i~------~~------------~----~~~~piilvgnK~Dl~~~r-~V~~~e~~~~a~~~~~~~~e~SA 144 (164)
T smart00175 96 ----KE----LR------EY------------A----DPNVVIMLVGNKSDLEDQR-QVSREEAEAFAEEHGLPFFETSA 144 (164)
T ss_pred ----HH----HH------HH------------C----CCCCCEEECCCCCCHHHHC-CCCHHHHHHHHHHCCCEEEEECC
T ss_conf ----99----99------86------------7----9998255116456856518-79999999999984997999831
Q ss_pred HHHH
Q ss_conf 0246
Q gi|254780226|r 243 AIEA 246 (367)
Q Consensus 243 ~~E~ 246 (367)
T Consensus 145 k~~~ 148 (164)
T smart00175 145 KTNT 148 (164)
T ss_pred CCCC
T ss_conf 6690