HHsearch alignment for GI: 254780226 and conserved domain: smart00176

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=96.86  E-value=0.014  Score=37.24  Aligned_cols=140  Identities=17%  Similarity=0.188  Sum_probs=78.1

Q ss_pred             EECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf             52888788899998740489873666867448833799768555877764218650233579998512235432224663
Q gi|254780226|r    8 IGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEGL   87 (367)
Q Consensus         8 vG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~Gl   87 (367)
T Consensus         1 vGD~gVGKTsli~R~~~~-~F-~~~y-----~pTiGvd~~~--------~~~~~~-~~~i~l~iWDTAGqE----~f~sl   60 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTG-EF-EKKY-----VATLGVEVHP--------LVFHTN-RGPIRFNVWDTAGQE----KFGGL   60 (200)
T ss_pred             CCCCCCCHHHHHHHHHCC-CC-CCCC-----CCCEEEEEEE--------EEEEEC-CEEEEEEEEECCCCC----CCCCC
T ss_conf             989887899999999409-99-9997-----8871489899--------999989-989999999898870----00110


Q ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             28999987303747885012345421134577673215788988887643322245777778752032046777899999
Q gi|254780226|r   88 GNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQSIIS  167 (367)
Q Consensus        88 GN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~~~l~  167 (367)
T Consensus        61 ~~~---yyr~a~~~IlvfDvt~~~S-------F------------------~~l~-~W----------------------   89 (200)
T smart00176       61 RDG---YYIQGQCAIIMFDVTARVT-------Y------------------KNVP-NW----------------------   89 (200)
T ss_pred             CHH---HCCCCCEEEEEEECCCHHH-------H------------------HHHH-HH----------------------
T ss_conf             265---5057878899963587789-------9------------------9899-99----------------------


Q ss_pred             HHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf             8899887587410344313267776210235764101001003430111010134678778864369840332100246
Q gi|254780226|r  168 SSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAAIEA  246 (367)
Q Consensus       168 ~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~E~  246 (367)
T Consensus        90 -------------------~~~l~~~~------~~ipiiLvGNK~DL~~r--~V~~e~-~~~a~~~~~~y~EtSAKt~~  140 (200)
T smart00176       90 -------------------HRDLVRVC------ENIPIVLCGNKVDVKDR--KVKAKS-ITFHRKKNLQYYDISAKSNY  140 (200)
T ss_pred             -------------------HHHHHHHC------CCCCEEEEEECCCCCCC--CCCHHH-HHHHHHCCCCEEEEECCCCC
T ss_conf             -------------------99999857------99988999988757404--365999-99999879978983004696