HHsearch alignment for GI: 254780226 and conserved domain: smart00176
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=96.86 E-value=0.014 Score=37.24 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=78.1
Q ss_pred EECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 52888788899998740489873666867448833799768555877764218650233579998512235432224663
Q gi|254780226|r 8 IGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEGL 87 (367)
Q Consensus 8 vG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~Gl 87 (367)
T Consensus 1 vGD~gVGKTsli~R~~~~-~F-~~~y-----~pTiGvd~~~--------~~~~~~-~~~i~l~iWDTAGqE----~f~sl 60 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG-EF-EKKY-----VATLGVEVHP--------LVFHTN-RGPIRFNVWDTAGQE----KFGGL 60 (200)
T ss_pred CCCCCCCHHHHHHHHHCC-CC-CCCC-----CCCEEEEEEE--------EEEEEC-CEEEEEEEEECCCCC----CCCCC
T ss_conf 989887899999999409-99-9997-----8871489899--------999989-989999999898870----00110
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 28999987303747885012345421134577673215788988887643322245777778752032046777899999
Q gi|254780226|r 88 GNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQSIIS 167 (367)
Q Consensus 88 GN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~~~l~ 167 (367)
T Consensus 61 ~~~---yyr~a~~~IlvfDvt~~~S-------F------------------~~l~-~W---------------------- 89 (200)
T smart00176 61 RDG---YYIQGQCAIIMFDVTARVT-------Y------------------KNVP-NW---------------------- 89 (200)
T ss_pred CHH---HCCCCCEEEEEEECCCHHH-------H------------------HHHH-HH----------------------
T ss_conf 265---5057878899963587789-------9------------------9899-99----------------------
Q ss_pred HHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 8899887587410344313267776210235764101001003430111010134678778864369840332100246
Q gi|254780226|r 168 SSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAAIEA 246 (367)
Q Consensus 168 ~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~E~ 246 (367)
T Consensus 90 -------------------~~~l~~~~------~~ipiiLvGNK~DL~~r--~V~~e~-~~~a~~~~~~y~EtSAKt~~ 140 (200)
T smart00176 90 -------------------HRDLVRVC------ENIPIVLCGNKVDVKDR--KVKAKS-ITFHRKKNLQYYDISAKSNY 140 (200)
T ss_pred -------------------HHHHHHHC------CCCCEEEEEECCCCCCC--CCCHHH-HHHHHHCCCCEEEEECCCCC
T ss_conf -------------------99999857------99988999988757404--365999-99999879978983004696