HHsearch alignment for GI: 254780226 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.75 E-value=3.5e-07 Score=68.15 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=52.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 13 ~~kililG~~~~GKTsil~~l~~-~~~-~~~--~pTvg~~~~~~~~~-----------------~~~l~iwD~~G----q 67 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL-GES-VTT--IPTIGFNVETVTYK-----------------NISFTVWDVGG----Q 67 (175)
T ss_pred EEEEEEECCCCCCHHHHHHHHHC-CCC-CCC--CCCCCCEEEEEEEC-----------------CEEEEEEECCC----C
T ss_conf 89999998899998999999965-997-775--79788107999989-----------------89999998999----8
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 68 e~~r~l~~~Y---y~~a~~iIfVvD~sd 92 (175)
T smart00177 68 DKIRPLWRHY---YTNTQGLIFVVDSND 92 (175)
T ss_pred CCCCHHHHHH---CCCCCEEEEEEECCC
T ss_conf 5455367775---577618999986687