Query gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 426
No_of_seqs 135 out of 1583
Neff 7.0
Searched_HMMs 39220
Date Mon May 23 21:06:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780227.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06555 pyrophosphate--fructo 100.0 0 0 778.1 39.6 400 27-426 1-400 (403)
2 TIGR02483 PFK_mixed phosphofru 100.0 0 0 752.5 28.3 330 31-398 1-336 (339)
3 PRK06830 diphosphate--fructose 100.0 0 0 727.6 35.4 368 13-426 63-437 (442)
4 PTZ00286 6-phospho-1-fructokin 100.0 0 0 686.8 35.4 364 14-423 80-450 (486)
5 TIGR02482 PFKA_ATP 6-phosphofr 100.0 0 0 695.6 26.6 297 31-398 1-299 (302)
6 cd00363 PFK Phosphofructokinas 100.0 0 0 654.6 34.9 327 30-418 1-336 (338)
7 PRK03202 6-phosphofructokinase 100.0 0 0 654.3 33.9 315 29-417 2-317 (323)
8 cd00763 Bacterial_PFK Phosphof 100.0 0 0 650.7 33.8 312 30-419 1-313 (317)
9 TIGR02478 6PF1K_euk 6-phosphof 100.0 0 0 645.9 23.1 334 30-423 1-371 (777)
10 TIGR02477 PFKA_PPi diphosphate 100.0 0 0 642.6 22.1 350 25-391 70-471 (566)
11 cd00764 Eukaryotic_PFK Phospho 100.0 0 0 620.8 30.7 336 28-423 2-363 (762)
12 COG0205 PfkA 6-phosphofructoki 100.0 0 0 619.4 31.0 306 28-400 1-312 (347)
13 pfam00365 PFK Phosphofructokin 100.0 0 0 591.1 30.8 278 30-378 1-279 (279)
14 cd00764 Eukaryotic_PFK Phospho 100.0 0 0 585.8 31.6 350 6-420 365-735 (762)
15 PRK07085 diphosphate--fructose 100.0 0 0 543.4 31.3 376 29-420 72-513 (557)
16 cd00765 Pyrophosphate_PFK Phos 100.0 0 0 540.6 29.9 377 28-421 71-515 (550)
17 TIGR02478 6PF1K_euk 6-phosphof 100.0 0 0 536.9 31.0 356 3-420 373-767 (777)
18 PTZ00287 6-phosphofructokinase 100.0 0 0 542.6 25.0 379 25-419 175-603 (1439)
19 PTZ00287 6-phosphofructokinase 100.0 0 0 434.9 22.7 357 30-404 855-1291(1439)
20 KOG2440 consensus 100.0 0 0 351.1 18.1 298 34-396 1-316 (666)
21 KOG2440 consensus 100.0 3.7E-43 0 297.9 1.6 387 15-426 106-533 (666)
22 pfam01513 NAD_kinase ATP-NAD k 96.2 0.025 6.4E-07 34.5 6.9 58 134-206 31-90 (243)
23 PRK02155 ppnK inorganic polyph 95.9 0.15 3.8E-06 29.5 10.7 125 27-217 3-129 (291)
24 PRK00561 ppnK inorganic polyph 95.6 0.032 8.2E-07 33.8 5.6 42 138-194 33-74 (259)
25 PRK02645 ppnK inorganic polyph 94.7 0.088 2.3E-06 30.9 5.5 126 27-221 1-130 (304)
26 PRK13337 putative lipid kinase 94.6 0.14 3.4E-06 29.7 6.2 88 123-223 43-131 (305)
27 PRK09423 gldA glycerol dehydro 94.5 0.22 5.7E-06 28.3 7.2 53 124-181 70-122 (366)
28 PRK03708 ppnK inorganic polyph 94.4 0.034 8.6E-07 33.7 2.8 120 30-217 1-122 (278)
29 PRK01911 ppnK inorganic polyph 94.2 0.075 1.9E-06 31.4 4.3 128 30-220 1-130 (290)
30 PRK04761 ppnK inorganic polyph 94.2 0.059 1.5E-06 32.1 3.7 41 136-191 23-63 (246)
31 PRK04885 ppnK inorganic polyph 94.2 0.15 3.9E-06 29.4 5.8 66 128-206 18-92 (265)
32 PRK02649 ppnK inorganic polyph 94.0 0.074 1.9E-06 31.4 4.0 66 137-217 67-134 (305)
33 PRK03378 ppnK inorganic polyph 93.9 0.082 2.1E-06 31.1 4.0 129 27-221 3-134 (292)
34 PRK03501 ppnK inorganic polyph 93.9 0.24 6.2E-06 28.1 6.3 80 127-220 19-109 (264)
35 PRK04759 consensus 93.8 0.09 2.3E-06 30.9 4.0 125 28-217 4-130 (294)
36 PRK01231 ppnK inorganic polyph 93.8 0.17 4.3E-06 29.2 5.4 113 28-206 3-117 (296)
37 COG3199 Predicted inorganic po 93.8 0.11 2.9E-06 30.2 4.5 52 124-181 86-137 (355)
38 PRK00861 putative lipid kinase 93.6 0.19 4.8E-06 28.8 5.4 133 126-296 45-183 (296)
39 PRK13057 putative lipid kinase 93.6 0.5 1.3E-05 26.1 7.6 86 124-224 37-122 (287)
40 TIGR00147 TIGR00147 conserved 93.5 0.43 1.1E-05 26.5 7.1 123 84-229 20-145 (316)
41 PRK04539 ppnK inorganic polyph 93.5 0.12 3.1E-06 30.0 4.2 128 28-217 4-134 (296)
42 PRK02231 ppnK inorganic polyph 93.3 0.13 3.4E-06 29.8 4.2 52 137-203 41-94 (272)
43 PRK03372 ppnK inorganic polyph 93.2 0.13 3.3E-06 29.8 4.0 133 26-217 1-135 (303)
44 pfam00465 Fe-ADH Iron-containi 92.6 0.45 1.2E-05 26.4 6.1 57 124-180 65-134 (312)
45 PRK11914 diacylglycerol kinase 92.3 0.46 1.2E-05 26.3 5.8 60 125-192 49-108 (304)
46 PRK10624 L-1,2-propanediol oxi 92.0 0.78 2E-05 24.8 6.7 54 124-177 72-140 (381)
47 PRK13059 putative lipid kinase 92.0 0.56 1.4E-05 25.8 5.9 86 126-224 45-130 (294)
48 PRK01185 ppnK inorganic polyph 90.6 0.28 7.3E-06 27.7 3.3 53 137-207 51-105 (272)
49 PRK10586 hypothetical protein; 90.0 1.3 3.2E-05 23.5 6.2 58 124-187 73-130 (362)
50 PRK09860 putative alcohol dehy 89.7 1.5 3.9E-05 22.9 6.6 53 124-176 74-139 (383)
51 COG1454 EutG Alcohol dehydroge 89.4 1.6 4.1E-05 22.8 6.7 54 124-177 72-138 (377)
52 cd06278 PBP1_LacI_like_2 Ligan 89.4 1.6 4.1E-05 22.8 10.6 80 127-219 43-122 (266)
53 cd06299 PBP1_LacI_like_13 Liga 89.4 1.6 4.2E-05 22.8 10.8 80 126-219 43-123 (265)
54 pfam01761 DHQ_synthase 3-dehyd 89.1 0.57 1.5E-05 25.7 3.9 67 123-195 62-131 (310)
55 PRK13054 lipid kinase; Reviewe 88.7 1.4 3.5E-05 23.2 5.6 88 125-223 43-131 (299)
56 COG0371 GldA Glycerol dehydrog 88.4 1.8 4.7E-05 22.4 6.1 55 123-182 69-123 (360)
57 PRK09461 ansA cytoplasmic aspa 88.3 1.9 4.9E-05 22.3 11.0 60 124-185 65-127 (335)
58 cd01542 PBP1_TreR_like Ligand- 88.3 1.9 5E-05 22.3 11.9 78 126-218 43-120 (259)
59 PRK13055 putative lipid kinase 88.2 1.9 4.7E-05 22.4 6.0 59 126-191 47-106 (334)
60 cd01574 PBP1_LacI Ligand-bindi 88.0 2 5.1E-05 22.2 6.9 81 125-219 43-123 (264)
61 COG0061 nadF NAD kinase [Coenz 87.6 0.82 2.1E-05 24.7 3.9 55 137-208 54-108 (281)
62 PRK00843 egsA NAD(P)-dependent 87.5 2.2 5.5E-05 22.0 6.7 54 124-182 74-127 (351)
63 pfam02569 Pantoate_ligase Pant 87.4 0.97 2.5E-05 24.2 4.2 17 128-144 76-92 (280)
64 TIGR01918 various_sel_PB selen 86.9 0.2 5.1E-06 28.6 0.4 109 26-147 122-235 (433)
65 PRK00380 panC pantoate--beta-a 86.5 2.4 6.2E-05 21.7 5.8 38 206-243 14-52 (283)
66 cd00560 PanC PanC Pantoate-be 85.7 2.5 6.5E-05 21.5 5.6 29 212-240 21-50 (276)
67 cd06273 PBP1_GntR_like_1 This 84.9 2.9 7.5E-05 21.1 10.8 125 126-285 43-177 (268)
68 smart00046 DAGKc Diacylglycero 84.1 1.4 3.5E-05 23.2 3.6 49 134-182 45-93 (124)
69 COG0414 PanC Panthothenate syn 83.8 3.2 8.2E-05 20.9 5.4 37 207-243 16-53 (285)
70 pfam07355 GRDB Glycine/sarcosi 83.5 0.36 9.2E-06 27.0 0.5 50 122-172 64-116 (349)
71 COG1597 LCB5 Sphingosine kinas 82.3 3.7 9.4E-05 20.5 5.3 70 125-203 45-117 (301)
72 cd06293 PBP1_LacI_like_11 Liga 80.5 4.3 0.00011 20.1 10.6 81 125-219 42-123 (269)
73 TIGR00018 panC pantoate--beta- 79.6 2.2 5.7E-05 21.9 3.3 71 194-265 7-97 (310)
74 TIGR03394 indol_phenyl_DC indo 76.8 4.6 0.00012 19.9 4.3 30 32-67 66-95 (535)
75 pfam00781 DAGK_cat Diacylglyce 76.3 5.7 0.00015 19.3 5.7 52 136-192 52-104 (127)
76 cd06294 PBP1_ycjW_transcriptio 76.1 5.8 0.00015 19.2 13.2 129 125-285 47-182 (270)
77 cd03133 GATase1_ES1 Type 1 glu 75.5 3.6 9.2E-05 20.5 3.5 63 131-193 75-155 (213)
78 TIGR03405 Phn_Fe-ADH phosphona 75.2 6.1 0.00016 19.1 6.4 50 127-176 67-135 (355)
79 PRK06179 short chain dehydroge 74.5 4.7 0.00012 19.8 3.8 30 270-299 152-181 (270)
80 PRK00002 aroB 3-dehydroquinate 74.4 6.4 0.00016 18.9 4.6 69 122-196 74-145 (360)
81 PRK00143 trmU tRNA (5-methylam 74.2 6.4 0.00016 18.9 4.6 72 26-145 1-72 (355)
82 cd06274 PBP1_FruR Ligand bindi 74.1 6.5 0.00017 18.9 9.3 124 127-284 44-175 (264)
83 TIGR01481 ccpA catabolite cont 72.5 7 0.00018 18.7 6.2 82 128-224 106-187 (332)
84 cd07995 TPK Thiamine pyrophosp 72.3 7.1 0.00018 18.6 8.4 96 33-150 1-102 (208)
85 KOG4180 consensus 72.0 3 7.6E-05 21.1 2.3 74 83-174 45-136 (395)
86 PRK11780 isoprenoid biosynthes 71.1 4.3 0.00011 20.0 3.0 101 30-158 2-105 (217)
87 cd06267 PBP1_LacI_sugar_bindin 71.0 7.6 0.00019 18.4 12.1 120 32-218 2-122 (264)
88 pfam00532 Peripla_BP_1 family. 70.8 7.7 0.0002 18.4 13.5 174 30-286 2-182 (281)
89 pfam07905 PucR Purine cataboli 69.4 8.2 0.00021 18.2 5.3 96 61-176 11-107 (122)
90 cd02017 TPP_E1_EcPDC_like Thia 68.9 8.4 0.00022 18.2 4.4 14 141-154 149-162 (386)
91 TIGR00519 asnASE_I L-asparagin 68.3 8.7 0.00022 18.1 6.1 79 124-204 65-147 (347)
92 cd06281 PBP1_LacI_like_5 Ligan 68.3 8.7 0.00022 18.1 6.9 80 127-219 44-123 (269)
93 PRK11814 cysteine desulfurase 67.1 4.9 0.00013 19.7 2.6 124 127-300 105-239 (484)
94 PRK06203 aroB 3-dehydroquinate 66.9 9.2 0.00024 17.9 4.9 68 124-197 94-164 (390)
95 TIGR01917 gly_red_sel_B glycin 66.1 1.7 4.3E-05 22.7 0.1 42 25-66 121-162 (431)
96 cd06323 PBP1_ribose_binding Pe 66.0 9.6 0.00024 17.8 12.8 99 32-191 2-102 (268)
97 cd06321 PBP1_ABC_sugar_binding 65.3 9.9 0.00025 17.7 12.4 128 31-219 1-128 (271)
98 TIGR00250 TIGR00250 conserved 65.0 6 0.00015 19.1 2.7 81 137-234 24-105 (133)
99 cd06290 PBP1_LacI_like_9 Ligan 63.7 11 0.00027 17.5 6.8 77 127-218 44-121 (265)
100 cd01575 PBP1_GntR Ligand-bindi 63.6 11 0.00027 17.5 14.1 130 125-286 42-177 (268)
101 KOG1342 consensus 63.2 11 0.00028 17.5 4.3 52 127-185 280-331 (425)
102 cd06297 PBP1_LacI_like_12 Liga 62.6 11 0.00028 17.4 12.7 66 128-205 45-110 (269)
103 TIGR00676 fadh2 5,10-methylene 61.0 12 0.0003 17.2 4.5 103 42-164 11-138 (302)
104 PRK10423 transcriptional repre 60.8 12 0.0003 17.2 6.7 44 126-174 100-143 (327)
105 TIGR03652 FeS_repair_RIC iron- 60.7 6.9 0.00018 18.7 2.4 27 127-155 8-34 (216)
106 cd01541 PBP1_AraR Ligand-bindi 60.4 12 0.00031 17.1 11.9 83 126-218 43-127 (273)
107 KOG0571 consensus 59.9 11 0.00029 17.3 3.4 23 141-163 229-251 (543)
108 PRK06186 hypothetical protein; 59.8 12 0.00032 17.1 5.6 70 137-222 52-127 (229)
109 pfam02401 LYTB LytB protein. T 59.7 12 0.00032 17.1 4.0 29 36-66 5-33 (280)
110 pfam02844 GARS_N Phosphoribosy 59.1 13 0.00033 17.0 5.4 93 31-175 1-93 (99)
111 cd00537 MTHFR Methylenetetrahy 59.0 13 0.00033 17.0 4.9 90 62-173 29-133 (274)
112 KOG1184 consensus 57.2 14 0.00035 16.8 7.2 92 135-228 63-174 (561)
113 COG3961 Pyruvate decarboxylase 56.9 14 0.00035 16.8 8.0 82 136-217 64-165 (557)
114 COG0052 RpsB Ribosomal protein 56.6 14 0.00036 16.7 4.9 58 139-203 157-215 (252)
115 cd06285 PBP1_LacI_like_7 Ligan 56.5 14 0.00036 16.7 11.4 127 124-285 41-174 (265)
116 COG0129 IlvD Dihydroxyacid deh 56.4 14 0.00036 16.7 8.9 128 8-175 24-153 (575)
117 cd06289 PBP1_MalI_like Ligand- 56.1 14 0.00037 16.7 13.3 139 124-291 41-183 (268)
118 KOG4435 consensus 56.0 14 0.00037 16.7 5.2 54 123-179 102-155 (535)
119 PRK12361 hypothetical protein; 55.9 14 0.00037 16.7 4.5 49 128-182 286-335 (546)
120 PRK00994 F420-dependent methyl 55.9 10 0.00026 17.6 2.6 49 123-173 44-92 (276)
121 PRK07092 benzoylformate decarb 55.7 12 0.0003 17.3 2.8 65 123-192 183-251 (521)
122 COG3395 Uncharacterized protei 55.2 14 0.00034 16.8 3.1 24 363-386 330-353 (413)
123 PRK01045 ispH 4-hydroxy-3-meth 55.1 15 0.00038 16.6 3.7 35 30-66 1-35 (304)
124 TIGR01980 sufB FeS assembly pr 53.8 5.3 0.00013 19.5 0.8 124 128-301 100-235 (469)
125 PRK10703 DNA-binding transcrip 53.0 16 0.00041 16.4 11.2 129 125-285 102-238 (335)
126 TIGR01162 purE phosphoribosyla 52.1 13 0.00033 17.0 2.6 74 123-222 38-112 (159)
127 pfam09001 DUF1890 Domain of un 52.1 17 0.00042 16.3 4.4 88 130-231 19-112 (138)
128 PRK12360 4-hydroxy-3-methylbut 52.0 17 0.00042 16.3 4.0 58 30-101 1-58 (281)
129 pfam00731 AIRC AIR carboxylase 51.8 17 0.00043 16.2 4.1 82 123-231 40-126 (150)
130 PRK08639 threonine dehydratase 51.4 17 0.00043 16.2 5.8 45 129-176 166-213 (418)
131 COG0458 CarB Carbamoylphosphat 51.4 17 0.00043 16.2 4.1 50 127-176 59-109 (400)
132 cd01746 GATase1_CTP_Synthase T 51.1 17 0.00044 16.2 3.7 58 137-210 54-113 (235)
133 cd05015 SIS_PGI_1 Phosphogluco 50.9 17 0.00044 16.2 6.1 40 125-164 5-45 (158)
134 PRK13371 4-hydroxy-3-methylbut 49.8 18 0.00046 16.0 7.3 81 6-103 24-104 (392)
135 KOG3125 consensus 49.6 18 0.00046 16.0 5.3 93 197-291 41-137 (234)
136 cd01714 ETF_beta The electron 49.1 18 0.00047 16.0 7.0 24 219-242 58-81 (202)
137 COG0763 LpxB Lipid A disacchar 49.1 18 0.00047 16.0 6.6 115 30-173 2-117 (381)
138 cd06291 PBP1_Qymf_like Ligand 48.4 19 0.00048 15.9 6.5 75 128-219 45-119 (265)
139 COG0504 PyrG CTP synthase (UTP 48.3 19 0.00048 15.9 5.5 29 11-46 121-149 (533)
140 PRK00087 4-hydroxy-3-methylbut 48.3 19 0.00048 15.9 4.1 43 127-173 196-238 (670)
141 cd06533 Glyco_transf_WecG_TagA 48.0 19 0.00049 15.9 6.5 48 123-173 31-78 (171)
142 PRK05784 phosphoribosylamine-- 48.0 19 0.00049 15.9 8.1 41 30-77 1-45 (485)
143 cd06275 PBP1_PurR Ligand-bindi 47.3 20 0.0005 15.8 12.0 51 125-180 42-92 (269)
144 PRK13477 bifunctional pantoate 47.3 20 0.0005 15.8 4.4 159 2-180 1-181 (512)
145 PHA00447 lysozyme 47.2 20 0.0005 15.8 4.7 36 151-192 99-134 (142)
146 cd06286 PBP1_CcpB_like Ligand- 47.1 20 0.0005 15.8 10.3 78 127-219 44-121 (260)
147 cd06272 PBP1_hexuronate_repres 46.6 20 0.00051 15.7 6.2 117 32-219 2-118 (261)
148 cd06298 PBP1_CcpA_like Ligand- 46.5 20 0.00051 15.7 12.1 80 125-218 42-122 (268)
149 TIGR01975 isoAsp_dipep beta-as 46.3 20 0.00052 15.7 3.0 46 129-192 112-157 (391)
150 COG1819 Glycosyl transferases, 45.3 21 0.00054 15.6 3.3 46 29-78 1-47 (406)
151 TIGR01459 HAD-SF-IIA-hyp4 HAD- 45.2 21 0.00054 15.6 3.5 60 329-414 179-240 (243)
152 cd06271 PBP1_AglR_RafR_like Li 44.9 21 0.00054 15.6 12.1 127 125-285 46-180 (268)
153 cd01743 GATase1_Anthranilate_S 43.9 22 0.00056 15.5 3.7 21 133-153 37-57 (184)
154 PRK13951 bifunctional shikimat 43.6 22 0.00057 15.4 4.4 69 122-196 218-289 (488)
155 COG1979 Uncharacterized oxidor 43.0 23 0.00058 15.4 3.2 41 125-165 72-112 (384)
156 cd01536 PBP1_ABC_sugar_binding 42.7 23 0.00059 15.3 20.3 126 31-219 1-128 (267)
157 KOG3857 consensus 42.6 23 0.00059 15.3 5.6 53 124-176 113-184 (465)
158 PRK10992 cell morphogenesis/ce 42.4 17 0.00044 16.1 2.0 27 127-155 15-41 (220)
159 cd01537 PBP1_Repressors_Sugar_ 42.1 24 0.0006 15.3 11.2 124 31-218 1-124 (264)
160 cd06283 PBP1_RegR_EndR_KdgR_li 42.1 24 0.0006 15.3 10.9 47 126-178 43-89 (267)
161 TIGR01133 murG undecaprenyldip 42.1 24 0.0006 15.3 7.4 128 27-183 1-134 (368)
162 cd06270 PBP1_GalS_like Ligand 41.7 24 0.00061 15.2 11.7 126 127-285 44-176 (268)
163 COG1609 PurR Transcriptional r 41.6 24 0.00061 15.2 6.8 128 124-285 100-235 (333)
164 cd06310 PBP1_ABC_sugar_binding 41.4 24 0.00061 15.2 17.5 128 31-219 1-130 (273)
165 TIGR00216 ispH_lytB 4-hydroxy- 41.3 24 0.00062 15.2 4.1 56 327-387 215-270 (354)
166 pfam11931 DUF3449 Domain of un 41.2 24 0.00061 15.2 2.6 74 126-208 78-153 (187)
167 COG1029 FwdB Formylmethanofura 41.0 24 0.00062 15.2 3.9 47 124-180 66-112 (429)
168 PRK13030 2-oxoacid ferredoxin 41.0 25 0.00063 15.2 6.5 30 214-243 496-529 (1168)
169 TIGR01663 PNK-3'Pase polynucle 40.6 25 0.00063 15.1 4.9 44 242-285 198-247 (526)
170 KOG1436 consensus 40.4 25 0.00064 15.1 7.2 26 351-376 335-360 (398)
171 TIGR02638 lactal_redase lactal 39.9 25 0.00065 15.1 3.2 107 124-234 72-193 (380)
172 pfam04405 ScdA_N Domain of Unk 39.9 25 0.00064 15.1 2.5 28 126-155 11-38 (56)
173 TIGR01283 nifE nitrogenase MoF 39.8 18 0.00047 16.0 1.8 56 129-190 225-290 (470)
174 COG3155 ElbB Uncharacterized p 39.6 26 0.00066 15.0 8.0 101 30-158 2-105 (217)
175 cd06322 PBP1_ABC_sugar_binding 38.8 26 0.00068 15.0 11.7 127 32-221 2-130 (267)
176 PRK12483 threonine dehydratase 38.5 27 0.00068 14.9 5.5 139 129-280 175-369 (521)
177 TIGR00419 tim triosephosphate 38.5 27 0.00068 14.9 2.8 25 219-243 67-91 (244)
178 cd06295 PBP1_CelR Ligand bindi 37.2 28 0.00072 14.8 10.6 123 129-285 55-185 (275)
179 cd06296 PBP1_CatR_like Ligand- 37.1 28 0.00072 14.8 12.5 136 126-292 43-186 (270)
180 COG0816 Predicted endonuclease 37.0 28 0.00072 14.8 3.2 29 152-180 40-68 (141)
181 pfam03808 Glyco_tran_WecB Glyc 36.4 29 0.00074 14.7 6.2 46 124-173 34-80 (172)
182 PRK13805 bifunctional acetalde 36.3 29 0.00074 14.7 6.2 170 30-236 106-322 (862)
183 PRK13029 2-oxoacid ferredoxin 36.3 29 0.00074 14.7 6.5 31 214-244 513-547 (1186)
184 cd02158 PanC_ATPS PanC_ATPS 35.8 29 0.00075 14.7 4.9 31 211-241 13-44 (183)
185 pfam01993 MTD methylene-5,6,7, 35.6 30 0.00076 14.6 2.6 49 123-173 43-92 (276)
186 CHL00101 trpG anthranilate syn 35.2 30 0.00077 14.6 3.4 23 132-154 37-59 (190)
187 cd02001 TPP_ComE_PpyrDC Thiami 35.1 30 0.00077 14.6 3.0 39 140-182 60-99 (157)
188 cd06308 PBP1_sensor_kinase_lik 34.5 31 0.00079 14.5 10.8 132 127-291 45-187 (270)
189 TIGR03282 methan_mark_13 putat 34.0 31 0.0008 14.5 4.8 30 261-290 165-194 (352)
190 cd06282 PBP1_GntR_like_2 Ligan 34.0 31 0.0008 14.5 7.0 79 127-218 44-122 (266)
191 PRK06895 para-aminobenzoate sy 33.9 32 0.00081 14.5 2.6 15 139-153 45-59 (191)
192 PRK13276 cell wall biosynthesi 33.8 25 0.00065 15.1 1.7 27 127-155 15-41 (224)
193 cd06325 PBP1_ABC_uncharacteriz 33.2 32 0.00083 14.4 7.3 90 31-176 1-90 (281)
194 cd06279 PBP1_LacI_like_3 Ligan 32.3 34 0.00086 14.3 6.7 73 132-218 50-122 (283)
195 pfam05833 FbpA Fibronectin-bin 32.1 28 0.00072 14.8 1.7 13 214-226 111-123 (447)
196 TIGR01508 rib_reduct_arch diam 31.9 34 0.00087 14.3 3.0 83 90-178 93-184 (224)
197 PRK02399 hypothetical protein; 31.9 34 0.00087 14.3 3.9 98 60-177 28-125 (407)
198 cd01744 GATase1_CPSase Small c 31.5 34 0.00088 14.2 4.1 49 132-193 33-82 (178)
199 PRK09472 ftsA cell division pr 30.9 35 0.0009 14.2 4.5 41 330-373 344-385 (420)
200 cd06319 PBP1_ABC_sugar_binding 30.5 36 0.00092 14.1 15.3 86 31-173 1-86 (277)
201 cd06305 PBP1_methylthioribose_ 30.4 36 0.00092 14.1 15.3 129 31-222 1-130 (273)
202 PRK08722 3-oxoacyl-(acyl carri 30.3 36 0.00092 14.1 7.2 152 27-209 1-179 (414)
203 COG1013 PorB Pyruvate:ferredox 30.1 37 0.00093 14.1 3.5 39 141-183 90-129 (294)
204 COG3222 Uncharacterized protei 29.8 37 0.00094 14.0 5.3 12 346-357 195-206 (211)
205 PRK12342 putative electron tra 29.6 37 0.00095 14.0 6.8 53 129-182 68-125 (254)
206 PRK09193 indolepyruvate ferred 29.4 38 0.00096 14.0 6.5 31 214-244 497-531 (1155)
207 KOG2178 consensus 29.3 13 0.00032 17.0 -0.4 56 137-207 167-224 (409)
208 TIGR00674 dapA dihydrodipicoli 29.2 38 0.00096 14.0 3.4 24 124-147 18-41 (288)
209 COG2846 Regulator of cell morp 29.1 38 0.00096 14.0 2.7 28 126-155 14-41 (221)
210 pfam02548 Pantoate_transf Keto 29.1 38 0.00097 14.0 5.2 44 124-173 94-137 (261)
211 cd05007 SIS_Etherase N-acetylm 28.3 39 0.001 13.9 9.8 117 40-176 31-154 (257)
212 pfam06414 Zeta_toxin Zeta toxi 28.0 40 0.001 13.8 8.8 27 200-227 78-104 (191)
213 PRK12726 flagellar biosynthesi 27.9 40 0.001 13.8 3.4 38 134-171 203-240 (407)
214 TIGR03336 IOR_alpha indolepyru 27.9 40 0.001 13.8 6.5 44 215-258 422-470 (595)
215 KOG1357 consensus 27.9 40 0.001 13.8 4.2 31 128-158 158-191 (519)
216 COG1844 Uncharacterized protei 27.8 40 0.001 13.8 7.7 40 141-182 2-41 (125)
217 cd06349 PBP1_ABC_ligand_bindin 27.4 40 0.001 13.8 6.4 24 36-59 8-31 (340)
218 PRK04183 glutamyl-tRNA(Gln) am 27.0 41 0.001 13.7 7.2 70 124-202 134-207 (421)
219 COG0685 MetF 5,10-methylenetet 27.0 41 0.0011 13.7 5.4 81 47-150 32-117 (291)
220 cd02064 Flavokinase_C Riboflav 27.0 41 0.0011 13.7 5.9 58 127-194 57-116 (179)
221 PRK11041 DNA-binding transcrip 26.4 42 0.0011 13.6 10.4 124 127-284 112-243 (341)
222 PRK05380 pyrG CTP synthetase; 26.3 42 0.0011 13.6 4.9 68 194-266 272-352 (534)
223 PRK08857 para-aminobenzoate sy 26.0 43 0.0011 13.6 3.5 50 132-194 37-86 (192)
224 PRK01966 ddl D-alanyl-alanine 26.0 43 0.0011 13.6 5.4 40 27-67 1-41 (344)
225 PRK07649 para-aminobenzoate/an 25.7 44 0.0011 13.6 3.3 51 132-195 37-87 (195)
226 COG4069 Uncharacterized protei 25.6 44 0.0011 13.6 4.4 40 127-174 257-296 (367)
227 PRK12815 carB carbamoyl phosph 25.2 44 0.0011 13.5 10.4 12 27-38 5-16 (1068)
228 pfam07859 Abhydrolase_3 alpha/ 25.0 45 0.0011 13.5 4.5 44 189-235 44-91 (209)
229 TIGR03573 WbuX N-acetyl sugar 24.9 45 0.0011 13.5 6.4 74 120-207 38-115 (343)
230 KOG0343 consensus 24.8 45 0.0012 13.5 4.6 128 70-205 80-247 (758)
231 pfam05893 LuxC Acyl-CoA reduct 24.7 45 0.0012 13.4 5.6 74 137-224 168-246 (400)
232 PRK05294 carB carbamoyl phosph 24.4 46 0.0012 13.4 10.4 14 26-39 4-17 (1063)
233 pfam00117 GATase Glutamine ami 24.3 46 0.0012 13.4 4.8 47 134-195 37-86 (187)
234 PRK09405 aceE pyruvate dehydro 24.1 47 0.0012 13.4 3.8 120 38-180 265-394 (886)
235 TIGR00108 eRF peptide chain re 23.9 22 0.00055 15.5 -0.1 174 64-266 148-325 (425)
236 COG0046 PurL Phosphoribosylfor 23.9 42 0.0011 13.7 1.4 18 190-207 481-498 (743)
237 PRK00025 lpxB lipid-A-disaccha 23.6 48 0.0012 13.3 9.1 137 31-205 3-141 (382)
238 pfam01328 Peroxidase_2 Peroxid 23.5 33 0.00085 14.3 0.9 11 37-47 25-35 (298)
239 pfam08459 UvrC_HhH_N UvrC Heli 23.4 48 0.0012 13.3 6.7 51 125-178 55-115 (154)
240 PRK11199 tyrA bifunctional cho 23.2 48 0.0012 13.3 3.4 34 137-172 96-129 (374)
241 PRK13129 consensus 23.2 48 0.0012 13.3 5.9 149 126-297 5-161 (267)
242 COG0041 PurE Phosphoribosylcar 23.2 48 0.0012 13.3 3.6 83 123-231 42-128 (162)
243 TIGR02546 III_secr_ATP type II 22.9 49 0.0013 13.2 4.5 127 176-341 119-245 (430)
244 COG2326 Uncharacterized conser 22.8 39 0.001 13.8 1.1 73 134-223 68-153 (270)
245 KOG2770 consensus 22.8 41 0.001 13.8 1.2 11 327-337 301-311 (401)
246 KOG1169 consensus 22.8 49 0.0013 13.2 6.8 93 130-222 315-410 (634)
247 pfam02457 DisA_N DisA bacteria 22.7 50 0.0013 13.2 2.3 64 128-223 2-65 (122)
248 cd01976 Nitrogenase_MoFe_alpha 22.7 50 0.0013 13.2 5.0 21 326-346 230-250 (421)
249 COG1570 XseA Exonuclease VII, 22.7 50 0.0013 13.2 8.5 100 30-181 136-240 (440)
250 PRK05670 anthranilate synthase 22.6 50 0.0013 13.2 4.0 23 132-154 37-59 (192)
251 TIGR01369 CPSaseII_lrg carbamo 22.5 50 0.0013 13.2 3.9 47 127-179 637-686 (1089)
252 COG5561 Predicted metal-bindin 22.3 50 0.0013 13.2 4.7 29 14-43 13-41 (101)
253 PTZ00063 histone deacetylase; 22.2 51 0.0013 13.1 4.9 21 132-152 245-265 (439)
254 pfam10479 FSA_C Fragile site-a 22.2 51 0.0013 13.1 2.6 42 326-368 568-609 (615)
255 pfam06792 UPF0261 Uncharacteri 21.7 52 0.0013 13.1 4.3 97 60-177 27-124 (403)
256 pfam00289 CPSase_L_chain Carba 21.6 52 0.0013 13.1 8.1 106 29-175 1-106 (109)
257 TIGR01811 sdhA_Bsu succinate d 21.6 52 0.0013 13.1 3.9 70 138-207 393-470 (620)
258 cd02005 TPP_PDC_IPDC Thiamine 21.5 52 0.0013 13.1 4.8 37 140-181 69-106 (183)
259 PRK06395 phosphoribosylamine-- 21.2 53 0.0014 13.0 4.7 22 29-53 2-23 (435)
260 pfam03159 XRN_N XRN 5'-3' exon 21.1 53 0.0014 13.0 3.1 18 138-155 74-91 (236)
261 KOG2636 consensus 21.1 53 0.0014 13.0 1.5 29 344-374 403-432 (497)
262 CHL00085 ycf24 putative ABC tr 21.1 36 0.00092 14.1 0.6 124 127-300 106-240 (485)
263 PRK09224 threonine dehydratase 21.0 54 0.0014 13.0 5.6 139 129-280 158-352 (504)
264 PRK00074 guaA GMP synthase; Re 20.9 21 0.00054 15.6 -0.6 43 32-76 49-91 (513)
265 TIGR03385 CoA_CoA_reduc CoA-di 20.9 54 0.0014 13.0 6.5 55 117-174 115-169 (427)
266 COG0482 TrmU Predicted tRNA(5- 20.9 54 0.0014 13.0 4.5 113 27-199 1-114 (356)
267 pfam07287 DUF1446 Protein of u 20.8 54 0.0014 13.0 6.2 50 125-174 58-107 (362)
268 PRK12311 rpsB 30S ribosomal pr 20.8 54 0.0014 12.9 6.5 77 126-211 145-229 (332)
269 PRK06180 short chain dehydroge 20.7 54 0.0014 12.9 5.2 89 27-151 1-91 (277)
270 cd01171 YXKO-related B.subtili 20.6 55 0.0014 12.9 2.8 30 310-339 184-213 (254)
271 PRK09201 amidase; Provisional 20.5 55 0.0014 12.9 6.1 12 415-426 406-417 (465)
272 cd06342 PBP1_ABC_LIVBP_like Ty 20.5 55 0.0014 12.9 6.8 29 31-59 1-31 (334)
273 PRK10401 DNA-binding transcrip 20.2 56 0.0014 12.9 11.7 90 127-231 104-202 (346)
274 PRK13121 consensus 20.2 56 0.0014 12.9 4.2 149 127-297 4-160 (265)
275 PRK13112 consensus 20.2 56 0.0014 12.9 5.7 149 127-297 5-161 (279)
No 1
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=0 Score=778.10 Aligned_cols=400 Identities=58% Similarity=0.984 Sum_probs=380.1
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV 106 (426)
Q Consensus 27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~ 106 (426)
||+||||||||||||||||++||++++++..++++++||||++||+||++++.++++++.++.+..++++|||+|||||+
T Consensus 1 ms~kriaIlTsGGd~PGlNavIr~vV~~~~~~~~~~eV~G~~~Gy~GLl~~~~~~l~~~~~~~~~~l~~~GGTiLGSsR~ 80 (403)
T PRK06555 1 MAKKKVAMLTAGGLAPCLSSAVGGLIERYTDVAPEIEIIAYKSGYQGLLLGDSIEITPAMREKAHLLHRHGGSPIGNSRV 80 (403)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCEECCHHHHHHHHHHHCCCCCEECCCCC
T ss_conf 99888999898776288999999999999861798499998721487569995507866777775662289776717988
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 88653011101234567456999999998639988999488257899999999998518996288522223477222114
Q gi|254780227|r 107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ 186 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~ 186 (426)
+++...+..+|....++++.++.++++|++++||+|++||||||+++|++|++++++++++|+||||||||||||++||+
T Consensus 81 kl~~~~d~~kr~~~~eg~d~~~~~~e~L~~~gId~L~~IGGDgS~~~A~~La~~~~~~~~~i~VVGIPKTIDNDl~~tD~ 160 (403)
T PRK06555 81 KLTNAADCVKRGLVKEGEDPLRVAAERLASDGVDILHTIGGDDTNTTAADLAAYLAANGYDLTVVGLPKTIDNDVVPIRQ 160 (403)
T ss_pred CCCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 87775320011443135359999999999829999999888059999999999999739995289614552178877688
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 63356599999999999998775166616999976987428999987401433231011111110001457652328786
Q gi|254780227|r 187 SLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEM 266 (426)
Q Consensus 187 tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~ 266 (426)
||||+||+++++++|++++.||.||+|.+++||||||||||||+++|+|.++.+..-.+.++.......+++|.|||||.
T Consensus 161 TfGF~TAv~~a~~aid~l~~tA~S~~r~~~vvEvMGR~aGwIA~~aa~A~~~~~~~~~~~~~~~~~~~~~~v~~iliPE~ 240 (403)
T PRK06555 161 SLGAWTAAEQGARFFDNVVNEQSAAPRMLVIHEVMGRNCGWLTAATARAYRQRLSRNEYVPGLMMDAELKDIDAVYLPEM 240 (403)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 86858899999999999998875167769999951778558999999875533012001310001100378888980078
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 55989999999998502895389950421111110123201122222344454435566489999999987187431884
Q gi|254780227|r 267 SFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQ 346 (426)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~~ 346 (426)
||+++.+.++++++++++++++||||||+.++....+.+..++...+|++||+++..++++++|++++.++++.++..++
T Consensus 241 ~f~l~~~~~~l~~~~~~~~~~vIvvaEGAg~~~~~~~~~~~g~~~~~Da~G~~~l~~i~~g~~~~~~~~~~~~~~~~~v~ 320 (403)
T PRK06555 241 AFDLEAEAARLKAVMDRTGCVTIFVSEGAGLDAIVAEREAAGETVKRDAFGHVKIDTINVGAWFGKQFADLLGAEKSLVQ 320 (403)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 53605479999999974798589983366730445556634885566875677214467779999999987187707976
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 18861235589867999999999999999977998669999859869964308985268820777589999998448898
Q gi|254780227|r 347 KSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILRHTGQKS 426 (426)
Q Consensus 347 ~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k~vd~~~~~~~~~l~~~gq~~ 426 (426)
+|||++||++|+++|+.||++||+.||+++|+|+||+|...++.++.+.+||+++++++|++||++.||+++|+.||||-
T Consensus 321 ~~~Y~~Rs~~an~~D~~~c~~l~~~AVh~amaG~tg~vg~~~~~~~~~~~i~~~~i~~~k~~d~~~~~~~~~l~~tgQp~ 400 (403)
T PRK06555 321 KSGYFARSAAANGDDLRLIQSMVDLAVESALNKVSGVTGHDEDQNGKLRTIEFPRIKGGKAFDTSTPWFGEVLDNIGQPY 400 (403)
T ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 88835668999878999999999999999968988868887077876967407986479972887179999999739969
No 2
>TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829 Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=100.00 E-value=0 Score=752.53 Aligned_cols=330 Identities=26% Similarity=0.357 Sum_probs=296.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCC-CCCEECCC-CCHHHHHHHHHCCCCCCCCC-CCC
Q ss_conf 7999836877514899999999999985699789998383660107-99130462-69888874640787400336-788
Q gi|254780227|r 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLL-DDKITITE-DMRQNAEQLLSYGGSPIGNS-RVK 107 (426)
Q Consensus 31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~-~~~~~l~~-l~~~~v~~~~~~GGt~Lgts-R~~ 107 (426)
|||||||||||||||+|||++|+++..- .+|||+||++||+||++ ++ ..+ |+.+++++|+..|||+|||| |.+
T Consensus 1 kIGvLTGGGDCPGLNAVIR~vV~~a~~~-~G~EV~G~~~Gw~GLL~n~~---~~~lL~~~~v~gIL~~GGTILGsSNr~N 76 (339)
T TIGR02483 1 KIGVLTGGGDCPGLNAVIRGVVRRAIAE-YGWEVIGIRDGWRGLLENGD---IVPLLDLEDVRGILPRGGTILGSSNRTN 76 (339)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHEE-CCCEEEEEECCCHHHHCCCC---CCCCCCHHHHHHHHHCCCEEECCCCCCC
T ss_conf 9377348777411238987875533101-28668887000000111666---0354781016879851990872577778
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 86530111012345674569999999986399889994882578999999999985189962885222234772221146
Q gi|254780227|r 108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t 187 (426)
||..++....+.+. ..+-.+++.+|+++++||+||.||||||++.|.+|++. .+||||||||||||||..||+|
T Consensus 77 PF~~~~~~~~G~~v-~~DvSd~~~~n~~~~GlDAlIaIGGdGTL~~A~~l~~~-----GGl~vVGVPKTIDNDl~~TD~T 150 (339)
T TIGR02483 77 PFKYEEDGEDGKTV-VRDVSDKIVANLKELGLDALIAIGGDGTLGIARRLADK-----GGLPVVGVPKTIDNDLEATDYT 150 (339)
T ss_pred CCCCCCCCCCCCEE-EEECCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHC-----CCCCEEEECCCCCCCCCCCCCE
T ss_conf 74200105798279-97320899998996498189986687268999999965-----8985474157754675324402
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 33565999999999999987751666169999769874289999874014332310111111100014576523287865
Q gi|254780227|r 188 LGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMS 267 (426)
Q Consensus 188 iGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~ 267 (426)
||||||++.++||+|+|++||.|| .|++||||||||||||||+|+||+|| |+|||||.|
T Consensus 151 FGFDTAv~iATEAlDRLhtTAeSH-~RVmVvEVMGRhAGWIAL~sG~aGGA--------------------d~ILIPE~P 209 (339)
T TIGR02483 151 FGFDTAVEIATEALDRLHTTAESH-HRVMVVEVMGRHAGWIALHSGIAGGA--------------------DVILIPEIP 209 (339)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHH-CCEEEEEECCCCHHHHHHHHHHHCCC--------------------CEEEECCCC
T ss_conf 221007899999875240058731-94899998485457999884352087--------------------678978604
Q ss_pred CCHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 5989999999998502-8953899504211111101232011222223444--544355664899999999871874318
Q gi|254780227|r 268 FNLEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFG--HILLDKMNVGSWFADKFANMIKAERSI 344 (426)
Q Consensus 268 ~~~~~~~~~i~~~~~~-~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g--~~~l~~~~i~~~La~~i~~~~~~~~~~ 344 (426)
|++++++++++++.++ ++|++||||||+..+.. +..-+....|.++ |.+|++ ++++||++|+++++.+ +|
T Consensus 210 ~d~~~v~~~v~~r~~~G~~f~ivVVAEGa~p~~G----~~~~~~~~~d~~g~G~~RLGG--iG~~lA~~i~~rtg~E-~R 282 (339)
T TIGR02483 210 FDIDSVCEKVRERFARGKRFAIVVVAEGAKPKGG----EMVVQEGVKDAFGFGHVRLGG--IGNWLAEEIERRTGIE-TR 282 (339)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CEEECCCCCCCCCCCCEECCC--HHHHHHHHHHHHCCCC-EE
T ss_conf 8889999999999872667525899726326787----141005642346766500132--1889999999871982-20
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEE
Q ss_conf 841886123558986799999999999999997799866999985986996430
Q gi|254780227|r 345 VQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIK 398 (426)
Q Consensus 345 ~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~ 398 (426)
+++|||+||||+||+|||+||++||.+||+++.+|++|.||+++++..+++||.
T Consensus 283 ~~VLGH~QRGG~PsafDR~LAtRfG~~Avdlv~~G~fg~MVALrg~~i~~V~i~ 336 (339)
T TIGR02483 283 ATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGHMVALRGTDIVSVPIA 336 (339)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECHH
T ss_conf 355003525979777688899999999999986199770799857756650320
No 3
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=0 Score=727.65 Aligned_cols=368 Identities=25% Similarity=0.374 Sum_probs=342.0
Q ss_pred HHHHHCCHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHH
Q ss_conf 99873321210348763379998368775148999999999999856997899983836601079913046269888874
Q gi|254780227|r 13 MWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQ 92 (426)
Q Consensus 13 ~~~~~g~~~~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~ 92 (426)
-+-++|||++++|||++.|+|||||||+|||+|+|||++|..+...|+.++||||++||+||+++...++.+|+++.+++
T Consensus 63 ~~e~AGPR~~i~FdP~~~k~gIvTcGGlCPGLN~VIR~iv~~l~~~Ygv~~V~Gi~~G~~Gli~~~~~~~i~Lt~~~V~~ 142 (442)
T PRK06830 63 FFEKAGPREKIYFDPSKVKAGIVTCGGLCPGINDVIRAIVLELYHRYGVRRIYGFRYGYEGLIPRYGHDPVELTPEVVAD 142 (442)
T ss_pred CEEECCCCCEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEECCHHHHCC
T ss_conf 30335885100127766079998567677648699999999988871997899967645453556688816599889646
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 64078740033678886530111012345674569999999986399889994882578999999999985189962885
Q gi|254780227|r 93 LLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG 172 (426)
Q Consensus 93 ~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vig 172 (426)
|++.|||+|||||... +.+.++++|++++||.|++|||||||++|..|++++.+++.+|+|||
T Consensus 143 I~~~GGTILGsSRg~~-----------------d~~~ivd~l~~~gid~L~~IGGDGTl~gA~~i~~e~~~rgl~I~VvG 205 (442)
T PRK06830 143 IHQFGGTILGSSRGPQ-----------------DPVEIVDTLERMNINILFVIGGDGTLKGALKIAEEIARRNLKISVVG 205 (442)
T ss_pred HHHCCCCEEEECCCCC-----------------CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 5537982896089998-----------------98999999998399989994880278999999999996389940774
Q ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 22223477222114633565999999999999987751666169999769874289999874014332310111111100
Q gi|254780227|r 173 LPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFS 252 (426)
Q Consensus 173 iPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~ 252 (426)
||||||||+++||+||||+||++.++++|++++.||.|+++++++||+|||++||||++++||++
T Consensus 206 IPKTIDNDi~~~d~sfGF~TAv~~a~~ai~~~~~eA~s~~~gvg~v~lMGR~sG~IA~~a~lA~~--------------- 270 (442)
T PRK06830 206 IPKTIDNDINFIQKSFGFETAVEKATEAIACAHVEAKGAPNGIGLVKLMGRHSGFIAAYAALASK--------------- 270 (442)
T ss_pred CCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCC---------------
T ss_conf 56433477543031312461999999999999877651578559999836643089998775137---------------
Q ss_pred CCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 0145765232878655989---9999999985028953899504211111101232011222223444544355664899
Q gi|254780227|r 253 PDFKGIDGVYLPEMSFNLE---VEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329 (426)
Q Consensus 253 ~~~~~~d~iliPE~~~~~~---~~~~~i~~~~~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~ 329 (426)
..|+|||||.||+++ .+++.++++++.++|++||||||+.++... ....+|+.||..+. +++.+
T Consensus 271 ----~ad~~LIPE~pf~l~g~~~~l~~l~~R~~~k~~avIvVAEGAGq~l~~-------~~~~~DaSGN~kl~--dIG~~ 337 (442)
T PRK06830 271 ----DVNFVLIPEVPFDLEGENGLLAHLERRLLERGHAVIVVAEGAGQKLFD-------GTPETDASGNLKLG--DIGLF 337 (442)
T ss_pred ----CCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-------CCCCCCCCCCCCCC--CHHHH
T ss_conf ----787899128864555612299999999855995699995576643233-------44554877885032--78999
Q ss_pred HHHHHHHHHCCCCE----EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCC
Q ss_conf 99999987187431----88418861235589867999999999999999977998669999859869964308985268
Q gi|254780227|r 330 FADKFANMIKAERS----IVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGG 405 (426)
Q Consensus 330 La~~i~~~~~~~~~----~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~ 405 (426)
|+++++++++.... ++++|+|++|+++|+++|+.||++||++||+++|+|+||+||++++++++++||+ .++..+
T Consensus 338 L~~~I~~~f~~~~~~~~lkyIDPsY~IRs~pana~D~v~c~~Lg~~AVhaaMAG~Tg~~Vg~~~~~~v~VPI~-~a~~~~ 416 (442)
T PRK06830 338 LKDKITEYFKKKGIEINLKYIDPSYIIRSVPANASDSVYCGRLGQNAVHAAMAGKTGMVVGLWNNRFVHLPID-LAVSQR 416 (442)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECHH-HHHCCC
T ss_conf 9999999986458078898706885011789980789999999999999996787784999988969997499-984538
Q ss_pred CCCCCCHHHHHHHHHHCCCCC
Q ss_conf 820777589999998448898
Q gi|254780227|r 406 RVFDTNTPWFSDILRHTGQKS 426 (426)
Q Consensus 406 k~vd~~~~~~~~~l~~~gq~~ 426 (426)
|.|||++.+|+++|+.||||+
T Consensus 417 k~Vdp~g~lW~~vl~~TgQP~ 437 (442)
T PRK06830 417 KKVNPNGDLWRSVLESTGQPR 437 (442)
T ss_pred CEECCCCHHHHHHHHHCCCCH
T ss_conf 641889379999998539970
No 4
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=0 Score=686.75 Aligned_cols=364 Identities=24% Similarity=0.329 Sum_probs=337.4
Q ss_pred HHHHCCHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHH
Q ss_conf 98733212103487633799983687751489999999999998569978999838366010799130462698888746
Q gi|254780227|r 14 WILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQL 93 (426)
Q Consensus 14 ~~~~g~~~~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~ 93 (426)
+-++|||++++|+|++.|+|||||||+|||+|+|||++|..+...|+..+||||++||+||+.+...+..+|++..+++|
T Consensus 80 fE~AGPR~~iyFdP~~v~agIvTcGGlCPGLNaVIRavV~~l~~~YGv~~V~Gir~Gy~Gl~~~~~~~~i~Lt~~~V~~I 159 (486)
T PTZ00286 80 CELAAARKHLHFNPSETSIGIVTCGGICPGLNDVIRSITLTGIIAYRVKRVVGFRYGYWGLSKEGSKTAIELSRTDVRQI 159 (486)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCHHHHHHH
T ss_conf 44568853356796451899991677886386999999999998659808999777665567667786065898997028
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 40787400336788865301110123456745699999999863998899948825789999999999851899628852
Q gi|254780227|r 94 LSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL 173 (426)
Q Consensus 94 ~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi 173 (426)
+..|||+|||||.. .+.+.++++|++++||.|++||||||+++|..|++++++++.+|+||||
T Consensus 160 h~~GGTILGTSRG~-----------------~d~~~iVd~L~~~gId~LfvIGGDGTlrgA~~I~~e~~~Rgl~I~VVGI 222 (486)
T PTZ00286 160 HRFGGTILGSSRGP-----------------QDPKEMVDTLVRMKINILFTVGGDGTQRGALKIYEEAKRRGENIAVFGV 222 (486)
T ss_pred HHCCCEEEECCCCC-----------------CCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 76798398548999-----------------8989999999985999899978846688999999999971788506646
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 22234772221146335659999999999999877516661699997698742899998740143323101111111000
Q gi|254780227|r 174 PKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSP 253 (426)
Q Consensus 174 PKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~ 253 (426)
||||||||+.||+|||||||++.++++|+.++.||.|+++++.+||+|||++||||++++||++
T Consensus 223 PKTIDNDI~~~D~TFGFdTAVe~AteAI~~ah~EA~sa~nGIGlVkLMGR~SGfIA~~A~LAs~---------------- 286 (486)
T PTZ00286 223 PKTIDNDLAFSHRTFGFQTAVEQAVNAVRAAYAEAVSLNYGVGIVKLMGRESGFIAAQTAVASA---------------- 286 (486)
T ss_pred CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCC----------------
T ss_conf 8543576410010024023999999999999887523568518999725551289988775138----------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 14576523287865598999999999850289538995042111111012320112222234445443556648999999
Q gi|254780227|r 254 DFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADK 333 (426)
Q Consensus 254 ~~~~~d~iliPE~~~~~~~~~~~i~~~~~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~ 333 (426)
.+|+|||||.||.++.+++.+++++++++++|||||||+.++. ......+|+.||..+. ++|.+|.++
T Consensus 287 ---~vd~cLIPE~pf~~~Gll~~le~Rl~~~ghaVIVVAEGAGQd~-------~~~~~~~DaSGN~~l~--DIG~~Lk~~ 354 (486)
T PTZ00286 287 ---QANICLIPENPLPKETVMRLIERRFQQSRNCVIIVAEGFGQDW-------ETGTGGHDASGNKKLI--DIGFILKKE 354 (486)
T ss_pred ---CCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-------CCCCCCCCCCCCEECH--HHHHHHHHH
T ss_conf ---7778992487778005999999999847987999934677433-------3556885898898515--589999999
Q ss_pred HHHHHCC---C----CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCC
Q ss_conf 9987187---4----31884188612355898679999999999999999779986699998598699643089852688
Q gi|254780227|r 334 FANMIKA---E----RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGR 406 (426)
Q Consensus 334 i~~~~~~---~----~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k 406 (426)
+++++.. + ..++++|.|+.|++++++.|+.||++||+.||+++|+|+||++|+.++++++++||+ .++..+|
T Consensus 355 I~~~f~~~~~~~~~~~lKYIDPsYmIRsvpANa~D~vyC~~LaqnAVHaaMAG~Tg~~Vg~~n~~~v~vPI~-~~~~~rk 433 (486)
T PTZ00286 355 VEAWLRANKEKYPQGTVKYIDPSYMIRACPPSSNDALFCTTLATLAVHEAMAGATGCIIAMRYNNYILVPIK-AATSVRR 433 (486)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECHH-HHHHHCC
T ss_conf 999998647546764058766874265278993077799999999888985677773898887989996348-9852075
Q ss_pred CCCCCHHHHHHHHHHCC
Q ss_conf 20777589999998448
Q gi|254780227|r 407 VFDTNTPWFSDILRHTG 423 (426)
Q Consensus 407 ~vd~~~~~~~~~l~~~g 423 (426)
.|||++.+|+++|+.|-
T Consensus 434 ~Vd~~g~lW~~Vle~T~ 450 (486)
T PTZ00286 434 VVSLRGALWRQVREITV 450 (486)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 15998378999999982
No 5
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828 6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=100.00 E-value=0 Score=695.60 Aligned_cols=297 Identities=28% Similarity=0.342 Sum_probs=275.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN 110 (426)
Q Consensus 31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~ 110 (426)
|||||||||||||||||||++|++|.. .+.||||+++||.||++++ +.+++...|.++.+.|||+|+|+|+..|+
T Consensus 1 kIgiLTSGGDAPGMNaAIRavvr~A~~--~g~EVyG~~~GY~GLi~g~---i~~l~~~~V~~Ii~~GGT~L~tAR~~EFK 75 (302)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY--QGIEVYGIRRGYKGLINGK---IVPLKSKAVSGIISKGGTILGTARCPEFK 75 (302)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCCCCCCE---EECCCCCCHHCCCCCCCCEEECCCCCCCC
T ss_conf 916751788870256899999999998--1970689873542130441---34246644001001588333114785456
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 30111012345674569999999986399889994882578999999999985189962885222234772221146335
Q gi|254780227|r 111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGA 190 (426)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGf 190 (426)
+++.++ +++++|++++||+|||||||||+.+|++|+++ +++||||+|.||||||++|||||||
T Consensus 76 ~~evR~------------kA~~nLK~~GI~~LVViGGDGSy~GA~~L~~~-----gg~~~iGlPGTIDNDI~~TDyTIGf 138 (302)
T TIGR02482 76 TEEVRE------------KAVENLKKLGIEALVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIQGTDYTIGF 138 (302)
T ss_pred CHHHHH------------HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH-----CCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 878999------------99999887488668998684406889999971-----7984787458502566643225566
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 65999999999999987751666169999769874289999874014332310111111100014576523287865598
Q gi|254780227|r 191 LTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270 (426)
Q Consensus 191 dTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~ 270 (426)
|||+|++.++||+|+.|| +||+|.||||||||||||||+++|||||| +.+++||.+.++
T Consensus 139 DTALNTi~~avdKiRDTA-~SHeR~f~iEVMGR~aGdLAl~aaiAtGA--------------------E~i~~pE~~~~~ 197 (302)
T TIGR02482 139 DTALNTILDAVDKIRDTA-TSHERAFVIEVMGRHAGDLALYAAIATGA--------------------EIIIIPEFDLDI 197 (302)
T ss_pred HHHHHHHHHHHHHHHCCC-CCCCCEEEEEECCCCHHHHHHHHHHHHHH--------------------HEEECCCCCCCH
T ss_conf 667437998776542130-12165689995078557899999886401--------------------021158888898
Q ss_pred HHHHHHHHHHHHC-CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHCCCCEEEECC
Q ss_conf 9999999998502-8953899504211111101232011222223444544355664899999999-8718743188418
Q gi|254780227|r 271 EVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFA-NMIKAERSIVQKS 348 (426)
Q Consensus 271 ~~~~~~i~~~~~~-~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~-~~~~~~~~~~~~l 348 (426)
+++++++|+++++ |.+++|+++|+... +-+..++++++ ++.+.+ +|+++|
T Consensus 198 ~~l~~~~k~~~~~~k~~SiI~~ae~~~~---------------------------g~~~e~A~~iene~~g~~-tR~~vL 249 (302)
T TIGR02482 198 EELIERIKEQREAGKKNSIIIVAEGNIL---------------------------GNAKEVAKKIENEKTGIE-TRVTVL 249 (302)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEEEC---------------------------CCHHHHHHHHHCCCCCCE-EEEEEE
T ss_conf 9999999999860899618999951014---------------------------776788876304789842-899997
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEE
Q ss_conf 86123558986799999999999999997799866999985986996430
Q gi|254780227|r 349 GYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIK 398 (426)
Q Consensus 349 Gy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~ 398 (426)
||.||||+||+|||.||++||.+|||++++|++|+|+++++++.+..||+
T Consensus 250 GH~QRGG~P~a~DR~LAs~lG~~AvE~L~~g~~gvmig~~~nkiv~~Pi~ 299 (302)
T TIGR02482 250 GHTQRGGSPSAFDRILASRLGAKAVELLLEGKSGVMIGLQNNKIVAVPIE 299 (302)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCC
T ss_conf 56647979648788899999999999986398203688537825738810
No 6
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=0 Score=654.57 Aligned_cols=327 Identities=24% Similarity=0.281 Sum_probs=287.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT 109 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~ 109 (426)
||||||||||||||||++||++++++.. .+++|||+++||+||+++++ .+++++++++|.++|||+|||||++++
T Consensus 1 krIaIltsGG~~pGmNa~ir~vv~~a~~--~g~~v~Gi~~G~~GL~~~~~---~~L~~~~v~~i~~~GGt~LgssR~~~~ 75 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA--EGLEVYGIYEGYAGLVEGDI---KELDWESVSDIINRGGTIIGSARCKEF 75 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHCCCCE---EECCHHHHHHHHHCCCEECCCCCCCCC
T ss_conf 9599986888866888999999999997--79999998257777707981---629999998798569813167678766
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r 110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG 189 (426)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG 189 (426)
.+ ++.+++++++|++++||+|++|||||||++|++|++++.+++++++||||||||||||++||+|||
T Consensus 76 ~~------------~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDl~~td~t~G 143 (338)
T cd00363 76 RT------------EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIG 143 (338)
T ss_pred CC------------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 78------------677899999999829998999789269999999999888528995189841034789978854888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 56599999999999998775166616999976987428999987401433231011111110001457652328786559
Q gi|254780227|r 190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFN 269 (426)
Q Consensus 190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~ 269 (426)
||||+++++++++++++||.| |+||||||+|||+|||||++++||++| |+|||||.|++
T Consensus 144 f~TA~~~~~~ai~~i~~ta~S-~~rv~iVEvMGR~aG~lAl~aala~ga--------------------d~iliPE~~~~ 202 (338)
T cd00363 144 FDTALKTIVEAIDRIRDTASS-HQRTFVVEVMGRHCGDIALEAGLATGA--------------------DIIFIPEEPAA 202 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCHHHHHHHHHCCC--------------------CEEEECCCCCC
T ss_conf 799999999999999987406-787799996898833899998874299--------------------88995486777
Q ss_pred ---HHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf ---8999999999850-289538995042111111012320112222234445443556648999999998718743188
Q gi|254780227|r 270 ---LEVEIERLSKVME-KKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIV 345 (426)
Q Consensus 270 ---~~~~~~~i~~~~~-~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~ 345 (426)
++.+++.++++.+ +++|++||||||+..... ....++.|+++++++++.+ .|+
T Consensus 203 ~~~~~~~~~~i~~~~~~gk~~~iVvVaEG~~~~~~----------------------~~~~~~~l~~~i~~~~~~~-~r~ 259 (338)
T cd00363 203 DEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDFIP----------------------KPITEKLLAKLVEERLGFD-TRA 259 (338)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC----------------------CCCHHHHHHHHHHHHHCCC-EEE
T ss_conf 40399999999999974897279999799855568----------------------7435899999999985970-545
Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC---CEEEEEEEHHHHCCCCCCCC--CHHHHHHH
Q ss_conf 418861235589867999999999999999977998669999859---86996430898526882077--75899999
Q gi|254780227|r 346 QKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERE---NNILRIIKFEDIRGGRVFDT--NTPWFSDI 418 (426)
Q Consensus 346 ~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~---~~~~~~i~~~~i~~~k~vd~--~~~~~~~~ 418 (426)
++|||+||||.||++||.+|++||+.||+++++|+||+|+++++. ...++|++ +.+...|.|++ +.+.|+..
T Consensus 260 ~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~G~tg~mv~i~~~~~~~i~~vPl~-~~~~~~k~v~~dl~~~~f~~~ 336 (338)
T cd00363 260 TVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGTPVGIQNLNENQVVRHPLT-EAVNMTKRVGVDLEGRPFKKF 336 (338)
T ss_pred CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCHH-HHHHHCCCCCHHHCCCCHHHH
T ss_conf 20489885899987899999999999999998499993699995889979961299-997326889934456965675
No 7
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=0 Score=654.29 Aligned_cols=315 Identities=24% Similarity=0.319 Sum_probs=285.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 33799983687751489999999999998569978999838366010799130462698888746407874003367888
Q gi|254780227|r 29 AHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKL 108 (426)
Q Consensus 29 ~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~ 108 (426)
.||||||||||||||||++||++++++.. .+++|||+++||+||+++++ .+++|+++++|.++|||+|||||+++
T Consensus 2 ~kriaIltsGG~~pGmNa~ir~vv~~a~~--~g~~v~G~~~G~~GL~~~~~---~~L~~~~v~~i~~~GGt~LgtsR~~~ 76 (323)
T PRK03202 2 MKKIGVLTSGGDAPGMNAAIRGVVRTAIS--EGLEVYGIYNGYLGLLEGDI---IDLDRASVSDLINRGGTALGSARYPE 76 (323)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHCCCCE---EECCHHHHHHHHHCCCCEEEECCCCC
T ss_conf 86699993688867789999999999997--89999999167788648985---76999999999847986742048887
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 65301110123456745699999999863998899948825789999999999851899628852222347722211463
Q gi|254780227|r 109 TNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSL 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~ti 188 (426)
+..+ +..++++++|++++||+|++||||||+++|++|++ .++++||||||||||||++||+||
T Consensus 77 ~~~~------------~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~-----~~~i~vigIPkTIDNDl~~tD~t~ 139 (323)
T PRK03202 77 FKLE------------EGRAKAIENLKKHGIDALVVIGGDGSYDGAKKLSE-----EYGIPCIGIPKTIDNDLAGTDYTI 139 (323)
T ss_pred CCCH------------HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH-----CCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 7788------------89999999999829999999379469999999984-----379748972144468987776788
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 35659999999999999877516661699997698742899998740143323101111111000145765232878655
Q gi|254780227|r 189 GALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSF 268 (426)
Q Consensus 189 GfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~ 268 (426)
|||||+++++++++++++||.| |+|+||||+|||+|||||++++||++| |+|||||.||
T Consensus 140 Gf~TA~~~~~~aid~i~~ta~s-~~rv~ivEvMGR~aG~lAl~~~lA~ga--------------------d~iliPE~~~ 198 (323)
T PRK03202 140 GFDTALNTVVEAIDKLRDTASS-HERVFIVEVMGRHAGDLALAAGLAGGA--------------------ELILIPEVPF 198 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCHHHHHHHHHCCC--------------------CEEEECCCCC
T ss_conf 8899999999998665776506-687799993586626899998763289--------------------8999249999
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 98999999999850-28953899504211111101232011222223444544355664899999999871874318841
Q gi|254780227|r 269 NLEVEIERLSKVME-KKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQK 347 (426)
Q Consensus 269 ~~~~~~~~i~~~~~-~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~~~ 347 (426)
+++++++.++++++ +++|++||||||+... -+++|+++++++++.+ +|+++
T Consensus 199 ~~~~~~~~i~~~~~~~k~~~iivvaEG~~~~---------------------------~g~~la~~i~~~~~~~-~R~~~ 250 (323)
T PRK03202 199 DIEEFLAKVKAGIKKGKKHCIVVVAEGIKDA---------------------------DGKELAKEIEEETGLE-TRVTV 250 (323)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCCCCC---------------------------CHHHHHHHHHHHHCCC-EEEEC
T ss_conf 9999999999999769982899996998877---------------------------8999999999983983-79803
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCCCHHHHHH
Q ss_conf 8861235589867999999999999999977998669999859869964308985268820777589999
Q gi|254780227|r 348 SGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSD 417 (426)
Q Consensus 348 lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k~vd~~~~~~~~ 417 (426)
|||+||||.|+++||.+|++||+.||+++++|++|+||++.++++.++|++ +++...|++|++ |++.
T Consensus 251 lG~~qRgg~p~a~Dr~~a~~lG~~Av~~~~~G~tg~mv~~~~~~~~~vpl~-~v~~~~k~v~~~--~i~~ 317 (323)
T PRK03202 251 LGHIQRGGSPTASDRVLASRMGAAAVELLLEGKGGVMVGIYNNKIVHVPLD-EVANKEKKVPPD--LIEL 317 (323)
T ss_pred CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEHH-HHHCCCCCCCHH--HHHH
T ss_conf 786774799987899999999999999997599987999999999997799-996488889989--9986
No 8
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=0 Score=650.70 Aligned_cols=312 Identities=25% Similarity=0.326 Sum_probs=282.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT 109 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~ 109 (426)
||||||||||||||||++||++++++. +.+++||||++||+||++++ +.+++|.++++|.++|||+|||||+.++
T Consensus 1 KrIaIltsGGd~pGmNa~Ir~vv~~a~--~~g~~v~Gi~~G~~GL~~~~---~~~l~~~~v~~i~~~GGt~LgtsR~~~~ 75 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAI--AEGLEVYGIRDGYAGLIAGD---IVPLDRYSVSDIINRGGTFLGSARFPEF 75 (317)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHCCCC---EEECCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 959999578885688999999999998--78999999825677870798---1628999998798659950146778754
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r 110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG 189 (426)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG 189 (426)
.. ++..++++++|++++||+|++||||||+++|+.|+|+ +++|||||||||||+++||+|||
T Consensus 76 ~~------------~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~l~e~------~i~vigIPkTIDNDi~gtd~t~G 137 (317)
T cd00763 76 KD------------EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTDYTIG 137 (317)
T ss_pred CC------------HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHC------CCCEEEECCCCCCCCCCCCCCCC
T ss_conf 55------------6789999999998299989995694589999999974------99779713544678888787868
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 56599999999999998775166616999976987428999987401433231011111110001457652328786559
Q gi|254780227|r 190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFN 269 (426)
Q Consensus 190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~ 269 (426)
||||+++++++++++++||. +|+|+||||+|||+|||||++++||++| |+|||||.||+
T Consensus 138 fdTAv~~~~~aid~i~~ta~-s~~rv~ivEvMGR~aG~lAl~a~lA~ga--------------------d~iliPE~~~~ 196 (317)
T cd00763 138 FDTALNTVVEAIDRIRDTSS-SHQRISVVEVMGRHCGDIALAAGIAGGA--------------------EFIVIPEAEFD 196 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHHHCCC--------------------CEEEECCCCCC
T ss_conf 89999999999999999850-5787699996897601899987875389--------------------89996899999
Q ss_pred HHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 89999999998502-89538995042111111012320112222234445443556648999999998718743188418
Q gi|254780227|r 270 LEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKS 348 (426)
Q Consensus 270 ~~~~~~~i~~~~~~-~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~~~l 348 (426)
++++++.+++++++ +++++||||||+.. +..|+++++++.+.+ +|+++|
T Consensus 197 ~~~~~~~i~~~~~~~k~~~iivvaEG~~~-----------------------------~~~~a~~i~~~~~~~-~r~~il 246 (317)
T cd00763 197 REEVANRIKAGIERGKKHAIVVVAEGVYD-----------------------------VDELAKEIEEATGFE-TRATVL 246 (317)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCC-----------------------------HHHHHHHHHHHHCCC-EEECCC
T ss_conf 99999999999982798079999799877-----------------------------899999999872984-210412
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 86123558986799999999999999997799866999985986996430898526882077758999999
Q gi|254780227|r 349 GYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDIL 419 (426)
Q Consensus 349 Gy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k~vd~~~~~~~~~l 419 (426)
||+||||+||++||++|++||..||+++++|++|+||++++++++++|++ +.+...|++|+ .|-++.
T Consensus 247 Gh~qRgg~psa~Dr~la~~lG~~Av~~~~~G~~g~mV~~~~~~~~~~pl~-e~~~~~k~~~~---~~~~l~ 313 (317)
T cd00763 247 GHIQRGGSPTAFDRILASRMGAYAVELLLAGKGGLAVGIQNEQLVHHDII-DAIENMKPFKK---DWLALA 313 (317)
T ss_pred CHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEHH-HHHCCCCCCCH---HHHHHH
T ss_conf 25552899884589999999999999997699985999999999995599-99704789999---999999
No 9
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161 Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal). Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis. For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=645.95 Aligned_cols=334 Identities=23% Similarity=0.291 Sum_probs=285.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT 109 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~ 109 (426)
||||||||||||||||||||+|||++ ++.|++||.+|+||+||+++-- .+.++.|++|++|++.|||+|||+|++.|
T Consensus 1 k~IgVlTSGGDAqGMNAAVRAVVR~a--I~~Gc~VY~irEGY~GLV~GGD-~I~~~~W~DV~g~l~~GGT~IGtARC~~F 77 (777)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMA--IYVGCRVYAIREGYEGLVDGGD-NIEELSWEDVRGILSLGGTLIGTARCKEF 77 (777)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH--HHHCCEEEEEECCCCCCCCCCC-HHHHCCCCCCCCHHHCCCCEEEEEEECCC
T ss_conf 90277723878742124889998988--7319979999707645322242-02111442312233448733420321544
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH-----------------HHCCCCCEEEE
Q ss_conf 5301110123456745699999999863998899948825789999999999-----------------85189962885
Q gi|254780227|r 110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYL-----------------KEKNYNITVVG 172 (426)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~-----------------~~~~~~i~vig 172 (426)
++-++|.+ +++||-+++||.|||||||||+++|..|-+++ .+....+.|+|
T Consensus 78 ReR~GRLk------------AA~Nl~~~gId~LvViGGDGSLTGAd~FR~EW~~L~~EL~~~g~It~Eq~~~~~~L~IvG 145 (777)
T TIGR02478 78 RERPGRLK------------AARNLIKRGIDALVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAKEHRHLTIVG 145 (777)
T ss_pred CCCHHHHH------------HHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHCCCCCCEEE
T ss_conf 58866899------------999988719945999889756888887763041588997315866479995078640677
Q ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 22223477222114633565999999999999987751666169999769874289999874014332310111111100
Q gi|254780227|r 173 LPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFS 252 (426)
Q Consensus 173 iPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~ 252 (426)
+-.+||||+++||.|||-|||+++++|+||.|..||.||+ |.|||||||||||||||+||+||+||+
T Consensus 146 lVGSIDND~~gTD~TIGadSaLhRIcEa~D~i~~TA~SHq-R~FVvEVMGRHCGyLAL~AaiAtgADy------------ 212 (777)
T TIGR02478 146 LVGSIDNDMCGTDMTIGADSALHRICEAIDAISSTAQSHQ-RAFVVEVMGRHCGYLALMAAIATGADY------------ 212 (777)
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHCCCCCC-CEEEEEECCCCHHHHHHHHHHHHHHCE------------
T ss_conf 5211016756478630224123347654330440430017-659998748842589999998862200------------
Q ss_pred CCCCCCCCCCCCCCCCCH----HHHHHHHHH-HHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 014576523287865598----999999999-850289538995042111111012320112222234445443556648
Q gi|254780227|r 253 PDFKGIDGVYLPEMSFNL----EVEIERLSK-VMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVG 327 (426)
Q Consensus 253 ~~~~~~d~iliPE~~~~~----~~~~~~i~~-~~~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~ 327 (426)
|+|||.|.+- |+++..+++ |.++|+..+|+||||+.+....+ -..
T Consensus 213 --------vFiPE~PP~~~~W~d~lc~~l~~~R~~GkR~~iViVAEGA~D~~~~p----------------------Its 262 (777)
T TIGR02478 213 --------VFIPERPPEEGDWEDQLCAKLKRNRKAGKRKNIVIVAEGAIDRELNP----------------------ITS 262 (777)
T ss_pred --------EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECEECCCCCC----------------------CCH
T ss_conf --------22478689888768899899888773689640799842105467779----------------------688
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---C----------CCEEEEEECCCEEE
Q ss_conf 9999999987187431884188612355898679999999999999999779---9----------86699998598699
Q gi|254780227|r 328 SWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISG---I----------SGVTGEDERENNIL 394 (426)
Q Consensus 328 ~~La~~i~~~~~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G---~----------sgvmv~i~~~~~~~ 394 (426)
+.+.+.|.++++. ++|+++|||+||||.||+|||++|++||+.||+++|+. . -++|+++..++..-
T Consensus 263 e~VK~vl~~~L~l-DtRiT~LGHVQRGG~PsA~DR~Lat~~GvEAV~avL~~tpe~~GavvtGqk~ps~VI~l~gNkI~R 341 (777)
T TIGR02478 263 EDVKDVLVERLGL-DTRITVLGHVQRGGAPSAYDRILATLQGVEAVLAVLESTPETEGAVVTGQKTPSPVISLRGNKIVR 341 (777)
T ss_pred HHHHHHHHHHCCC-CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEECCCEEEE
T ss_conf 9898886440184-024766052246887228999999864499999997268776874761543555147506870221
Q ss_pred EEEEHHHHCCCCCCC--CCHHHHHHHHHHCC
Q ss_conf 643089852688207--77589999998448
Q gi|254780227|r 395 RIIKFEDIRGGRVFD--TNTPWFSDILRHTG 423 (426)
Q Consensus 395 ~~i~~~~i~~~k~vd--~~~~~~~~~l~~~g 423 (426)
.|+- +++...|.|. ++.+-|.+++..-|
T Consensus 342 ~PL~-~~V~~T~~V~~~i~~~~f~~A~~LRg 371 (777)
T TIGR02478 342 KPLV-EAVRQTKTVAKAIKERRFDEAVRLRG 371 (777)
T ss_pred CHHH-HHHHHHHHHHHHHHCCCCHHHHHCCC
T ss_conf 3188-99998999899873177545872357
No 10
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=100.00 E-value=0 Score=642.63 Aligned_cols=350 Identities=22% Similarity=0.268 Sum_probs=303.5
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCC
Q ss_conf 48763379998368775148999999999999856997899983836601079913046269888874640787-40033
Q gi|254780227|r 25 KDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGN 103 (426)
Q Consensus 25 ~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~Lgt 103 (426)
.....-||||+.|||||||.||||+|+++.++..+++.++|||+.|..||+++++++++ .+.++.++|+|| ++|||
T Consensus 70 ~~~~~l~~GviLSGGqAPGGHNVi~GLFD~lk~~np~SkLyGF~~Gp~GL~~~~~~elT---~~~i~~YRN~GGFD~iGS 146 (566)
T TIGR02477 70 DEHQPLKVGVILSGGQAPGGHNVISGLFDALKKLNPESKLYGFLGGPEGLLDNNYVELT---KELIDEYRNTGGFDIIGS 146 (566)
T ss_pred HCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEC---HHHHHCCCCCCCEEEECC
T ss_conf 21687568898757989771146777899999737767200102074443158715763---788722278877420016
Q ss_pred CCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-
Q ss_conf 6788865301110123456745699999999863998899948825789999999999851899628852222347722-
Q gi|254780227|r 104 SRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII- 182 (426)
Q Consensus 104 sR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~- 182 (426)
+|+|+. .++++++++++.++++||+|||||||||++.|+.|||||.+++++++|||||||||.||.
T Consensus 147 GRtKI~-------------T~Eq~~~al~~~k~l~LdgLVIIGGDdSNTnAA~LAEyF~~~~~~t~viGVPKTIDGDLKn 213 (566)
T TIGR02477 147 GRTKIE-------------TEEQFAKALETAKKLKLDGLVIIGGDDSNTNAALLAEYFAKKGLKTQVIGVPKTIDGDLKN 213 (566)
T ss_pred CCCCCC-------------CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCC
T ss_conf 854556-------------8889999999987608964899747986799999999999738992278640254721102
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHH--------------
Q ss_conf -21146335659999999999999877516661699997698742899998740143323101111--------------
Q gi|254780227|r 183 -PIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYID-------------- 247 (426)
Q Consensus 183 -~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~-------------- 247 (426)
++|.|||||||++.++|+|.||+.||.|+.++||||++|||+|+|+||+|||+|+||+|+|.|+.
T Consensus 214 ~~iEtsFGFDTacK~YSElIGNi~rDA~S~~KYwHFIrLMGRsASHiaLECALqThPN~ciigEEv~~Kk~tL~~~~~~I 293 (566)
T TIGR02477 214 QYIETSFGFDTACKVYSELIGNICRDALSAKKYWHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQVTDYI 293 (566)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEHHHHHHHHCCCHHHHHHHH
T ss_conf 71045876104788998875578887664287136777437631589998732147976751233553258488999999
Q ss_pred ---HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC----C--CCEEEEEECCCCCCC-------------CHHHHH
Q ss_conf ---111000145765232878655989999999998502----8--953899504211111-------------101232
Q gi|254780227|r 248 ---GFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK----K--GSVAIFVSEGACRDV-------------IMDNRL 305 (426)
Q Consensus 248 ---~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~~----~--~~~vIVvsEG~~~~~-------------~~~~~~ 305 (426)
...+...+++..+|||||..+++.+++..+-+.++. . .|.-|- .|+...-. ..+...
T Consensus 294 ~d~i~~Ra~~G~NfGvvLiPEGLIEFIPEv~~L~~ELn~~L~~~~~~F~~i~-~~~~~~~~~~kLS~~~~~~f~~LP~~I 372 (566)
T TIGR02477 294 ADVIVKRAAKGKNFGVVLIPEGLIEFIPEVQALIKELNNLLAQNVEEFSKIK-FEGRKDLVKSKLSPESKALFESLPETI 372 (566)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCEECCHHHHHHHHHHHHHHHCCCCHHCCCC-HHHHHHHHHHHCCHHHHHHHHHCCHHH
T ss_conf 9999999856894279997698542026688999999865404762001467-788999998626888999974078679
Q ss_pred HCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC------C-----EEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 01122--2223444544355664899999999871874------3-----188418861235589867999999999999
Q gi|254780227|r 306 SSGEK--IKRDSFGHILLDKMNVGSWFADKFANMIKAE------R-----SIVQKSGYFARSAPSGSEDLSLIKKMVVLA 372 (426)
Q Consensus 306 ~~~~~--~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~------~-----~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~A 372 (426)
..+-. .+||+|||+++|+++++++|+++|+.++..+ + ...|++||+.|||.||.||+.|||.||+.|
T Consensus 373 ~~QLLnil~RDpHGNv~VS~IeTEKLLi~lV~~~l~~~~~~g~yK~~~F~a~~HFFGYEGRca~PSnFDs~YcY~LGy~A 452 (566)
T TIGR02477 373 RKQLLNILDRDPHGNVQVSQIETEKLLIELVQTELAKRKKEGEYKGKKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTA 452 (566)
T ss_pred HHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99998752679988537421127899999999999999863664677777546665530112677532103435789999
Q ss_pred HHHHHCCCCCEEEEEECCC
Q ss_conf 9999779986699998598
Q gi|254780227|r 373 VDSAISGISGVTGEDEREN 391 (426)
Q Consensus 373 v~~~~~G~sgvmv~i~~~~ 391 (426)
..++.+|.||+|++++|-.
T Consensus 453 ~~Ll~~g~TGYm~~i~NL~ 471 (566)
T TIGR02477 453 AILLANGLTGYMSTIKNLT 471 (566)
T ss_pred HHHHHCCCCEEEEEECCCC
T ss_conf 9999716760455500115
No 11
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=0 Score=620.75 Aligned_cols=336 Identities=23% Similarity=0.272 Sum_probs=280.1
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 63379998368775148999999999999856997899983836601079913046269888874640787400336788
Q gi|254780227|r 28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK 107 (426)
Q Consensus 28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~ 107 (426)
++||||||||||||||||++||++|+++. +.|++|||+++||+||+++.. .+.+++|++|++|.+.|||+|||+|++
T Consensus 2 ~~K~IaVLTSGGDapGMNAAIRAvVr~ai--~~G~ev~gI~~Gy~GLv~Ggd-~i~~l~~~dV~gil~~GGTiLGTaR~~ 78 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGI--YVGAKVFFVYEGYEGLVKGGD-YIKQAEWESVSNWLQEGGTIIGSARCK 78 (762)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHH--HCCCEEEEECHHCCHHHCCCC-CEEECCHHHHCCHHHCCCEEECCCCCC
T ss_conf 99889997987683467799999999999--869899998610017454986-667898567469775698465777897
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH-------H----------CCCCCEE
Q ss_conf 8653011101234567456999999998639988999488257899999999998-------5----------1899628
Q gi|254780227|r 108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLK-------E----------KNYNITV 170 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~-------~----------~~~~i~v 170 (426)
.|+++++++ ++++||.+++||+||+||||||+++|+.|.+++. + +..+++|
T Consensus 79 ~F~~~egr~------------~a~~nL~~~gIdaLiVIGGDGSltGA~~fr~ew~~ll~eL~~~G~i~~~~~~~~~~l~i 146 (762)
T cd00764 79 EFREREGRL------------QAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNI 146 (762)
T ss_pred CCCCHHHHH------------HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCE
T ss_conf 545776899------------99999998099889998795378777776655467899998727642344302578757
Q ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 85222234772221146335659999999999999877516661699997698742899998740143323101111111
Q gi|254780227|r 171 VGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFI 250 (426)
Q Consensus 171 igiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~ 250 (426)
||+|+|||||+++||+|||||||+++++++||+|++||. ||.|+|||||||||||||||++|+|+||
T Consensus 147 vGipgTIDNDi~gTD~TIG~dTAln~i~eaiD~I~~TA~-SH~R~fVVEVMGR~cG~LAL~agiA~GA------------ 213 (762)
T cd00764 147 VGMVGSIDNDFCGTDMTIGTDSALHRICEVVDAITTTAQ-SHQRTFVLEVMGRHCGYLALVSGLATGA------------ 213 (762)
T ss_pred EEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHHHHHHHHCCC------------
T ss_conf 884377346898875511388499999999987664476-4487799997787711999998764188------------
Q ss_pred HHCCCCCCCCCCCCCCCCC---HHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 0001457652328786559---899999999985-028953899504211111101232011222223444544355664
Q gi|254780227|r 251 FSPDFKGIDGVYLPEMSFN---LEVEIERLSKVM-EKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNV 326 (426)
Q Consensus 251 ~~~~~~~~d~iliPE~~~~---~~~~~~~i~~~~-~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i 326 (426)
|.|+|||.|++ .+.+++.+++.. .++++.+|+||||+......+ -.
T Consensus 214 --------D~ilIPE~p~~~~~~~~~~~~l~~~r~~Gkr~~IViVAEGa~d~~~~~----------------------i~ 263 (762)
T cd00764 214 --------DWIFIPERPPEDGWEDQMCRRLSEHRSRGKRLNIIIVAEGAIDDQLKP----------------------IT 263 (762)
T ss_pred --------CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----------------------HH
T ss_conf --------889956889996419999999999997599851899958867788886----------------------27
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCEEEEEEEHHHHC
Q ss_conf 89999999987187431884188612355898679999999999999999779---986699998598699643089852
Q gi|254780227|r 327 GSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISG---ISGVTGEDERENNILRIIKFEDIR 403 (426)
Q Consensus 327 ~~~La~~i~~~~~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G---~sgvmv~i~~~~~~~~~i~~~~i~ 403 (426)
++.+++.++++++.+ +|+++|||+||||+||+|||++|++||..||+++++. ...+|+++..++.+-.|+- +.+.
T Consensus 264 ~~~v~~~i~~~~g~d-tRvtvLGHvQRGGsPsa~DRiLat~mG~~AV~alle~tp~t~~~~i~~~~n~i~r~pL~-e~V~ 341 (762)
T cd00764 264 SEDVKDLVVERLGLD-TRVTTLGHVQRGGTPSAFDRILASLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLM-ECVQ 341 (762)
T ss_pred HHHHHHHHHHHCCCC-EEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEECCHH-HHHH
T ss_conf 999999999860985-15542130047999974888999999999999998269999885799617756853289-9999
Q ss_pred CCCCCC--CCHHHHHHHHHHCC
Q ss_conf 688207--77589999998448
Q gi|254780227|r 404 GGRVFD--TNTPWFSDILRHTG 423 (426)
Q Consensus 404 ~~k~vd--~~~~~~~~~l~~~g 423 (426)
..|.|. .+.+.|.++++..|
T Consensus 342 ~t~~v~~a~~~k~f~~a~~lr~ 363 (762)
T cd00764 342 LTKDVQKAMDEKRFDEAAALRG 363 (762)
T ss_pred HHHHHHHHHHCCCHHHHHHHCC
T ss_conf 9999999997227899997437
No 12
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=619.41 Aligned_cols=306 Identities=28% Similarity=0.359 Sum_probs=269.5
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 63379998368775148999999999999856997899983836601079913046269888874640787400336788
Q gi|254780227|r 28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK 107 (426)
Q Consensus 28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~ 107 (426)
..||||||||||||||||++||++++++... +++|||+++||+||++++ +.++++.+++.+.+.|||+|||||+.
T Consensus 1 ~~kkIaIlTSGGdaPGmNa~Iravvr~a~~~--g~eV~Gi~~Gy~GL~~~~---i~~l~~~~v~~~~~~GGT~lgssr~~ 75 (347)
T COG0205 1 MMKKIAILTSGGDAPGMNAVIRAVVRTAIKE--GLEVFGIYNGYLGLLEGD---IKPLTREDVDDLINRGGTFLGSARFP 75 (347)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCHHHHCCCC---CEECCHHHHHHHHHCCCEEEEECCCC
T ss_conf 9836999846889830769999999999976--978999943323420786---12144201467986598687547888
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 86530111012345674569999999986399889994882578999999999985189962885222234772221146
Q gi|254780227|r 108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t 187 (426)
.+++++.+ ++++++|++++||+|++||||||+++|+.|+|++ +++|||||||||||+++||+|
T Consensus 76 ~~~~~e~~------------~~~~~~l~~~gId~LvvIGGDGS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~t 138 (347)
T COG0205 76 EFKTEEGR------------KVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFT 138 (347)
T ss_pred CCCCHHHH------------HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHC-----CCCEEECCCCCCCCCCCCCCC
T ss_conf 76567799------------9999999983998899978887389999999735-----986896688702788645267
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 33565999999999999987751666169999769874289999874014332310111111100014576523287865
Q gi|254780227|r 188 LGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMS 267 (426)
Q Consensus 188 iGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~ 267 (426)
||||||+++++++|++++.|+ ++|+|+|||||||||||||||+||+|++| |+++|||.+
T Consensus 139 iGfdTA~~~~~eaid~l~dta-ssh~r~~iveVMGR~aG~lAl~aglA~~a--------------------~~ilipE~~ 197 (347)
T COG0205 139 IGFDTALETAVEAIDNLRDTA-SSHERIFIVEVMGRHAGWLALAAGLATGA--------------------DIILIPEEP 197 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECCCCHHHHHHHHHHHCCC--------------------CEEEECCCC
T ss_conf 558889999999999999997-57687899996286825999999885399--------------------899954743
Q ss_pred CCH--HHHHHHHHHHH--HCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--C
Q ss_conf 598--99999999985--02895389950421111110123201122222344454435566489999999987187--4
Q gi|254780227|r 268 FNL--EVEIERLSKVM--EKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKA--E 341 (426)
Q Consensus 268 ~~~--~~~~~~i~~~~--~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~--~ 341 (426)
++. ++++..+++.. ..+++++|+++||+...... ++ ..+...+++++.. .
T Consensus 198 ~~~~~~~~~~~i~~~~~~~gk~~~iIvvaEG~~~~~~~--------------~~----------~~~~~~i~~~~~~~~~ 253 (347)
T COG0205 198 ADLIIEELIAEIKAKREARGKKHAIIVVAEGAIDQIGE--------------NG----------AELLAAIEELLALGDF 253 (347)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCC--------------CH----------HHHHHHHHHHHHHCCC
T ss_conf 23018999999999999728774499975500014553--------------11----------3677789998630564
Q ss_pred CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHH
Q ss_conf 31884188612355898679999999999999999779986699998598699643089
Q gi|254780227|r 342 RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFE 400 (426)
Q Consensus 342 ~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~ 400 (426)
.+|++.|||+||||.|++|||.||++||..||+++++|++|+|+++++++.++.|++..
T Consensus 254 ~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~~g~~~~~v~i~~~~~v~~~~~~~ 312 (347)
T COG0205 254 ETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEA 312 (347)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEHHHHH
T ss_conf 15898446333688896578999999999999999759988559974783676205655
No 13
>pfam00365 PFK Phosphofructokinase.
Probab=100.00 E-value=0 Score=591.11 Aligned_cols=278 Identities=28% Similarity=0.333 Sum_probs=251.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT 109 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~ 109 (426)
||||||||||||||||++|+++++++. +.+++||||++||+||++++ +.++++.++.+|.++|||+|||||++++
T Consensus 1 KrI~IltsGG~~pG~Na~i~~vv~~a~--~~g~~v~G~~~G~~GL~~~~---~~~l~~~~v~~~~~~gGt~LgtsR~~~~ 75 (279)
T pfam00365 1 KKIGVLTSGGDAPGMNAAIRAVVRSAI--AEGLEVYGIYEGYAGLVAGN---IKQLDWESVSDIIQRGGTFIGSARCPEF 75 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHCCC---EEECCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 959999078886678999999999998--77999999905677882698---2409888898899659841246677755
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r 110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG 189 (426)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG 189 (426)
..+ +..++++++|++++||+|++|||||||++|++|+++ ++++|||||||||||+++||+|||
T Consensus 76 ~~~------------~~~~~~~~~l~~~~Id~li~IGGd~S~~~a~~L~~~-----~~i~vigIPkTIDNDl~~td~s~G 138 (279)
T pfam00365 76 RER------------EGRLKAAENLKKHGIDALVVIGGDGSYTGADLLTSE-----HGFNCVGLPGTIDNDICGTDYTIG 138 (279)
T ss_pred CCH------------HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 456------------679999999998489979996695689999999997-----299789820345689877767878
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 56599999999999998775166616999976987428999987401433231011111110001457652328786559
Q gi|254780227|r 190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFN 269 (426)
Q Consensus 190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~ 269 (426)
|+||+++++++|++++.||. +|+|+||||+|||+|||||++++||++| |++|+||.||+
T Consensus 139 f~TA~~~~~~~i~~l~~ta~-s~~rv~ivEvMGR~~G~LAl~~~la~ga--------------------d~iliPE~~~~ 197 (279)
T pfam00365 139 FDTALNTIVEAIDRIRDTAS-SHQRTFVVEVMGRHCGDLALVAGIAGGA--------------------DYIFIPEAPFW 197 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCHHHHHHHHHHHCCC--------------------CEEEECCCCCC
T ss_conf 89999999999999999864-2686499997997868999999885289--------------------99996798875
Q ss_pred HHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 89999999998502-89538995042111111012320112222234445443556648999999998718743188418
Q gi|254780227|r 270 LEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKS 348 (426)
Q Consensus 270 ~~~~~~~i~~~~~~-~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~~~l 348 (426)
++++++.+++.+++ +++++||||||+.. ..+..+.+++.+..+.+ +|++.|
T Consensus 198 ~~~~~~~i~~~~~~~k~~~ivvvsEG~~~---------------------------~~~~~~~~~i~~~~~~~-~r~~~l 249 (279)
T pfam00365 198 EEELCNRLKRGRERGKRHNIVIVAEGAID---------------------------PITSEFVKKLVVEGGYD-TRVTVL 249 (279)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCC---------------------------CCHHHHHHHHHHHCCCC-CEECCC
T ss_conf 89999999999980898059999789877---------------------------64199999999866997-444577
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 861235589867999999999999999977
Q gi|254780227|r 349 GYFARSAPSGSEDLSLIKKMVVLAVDSAIS 378 (426)
Q Consensus 349 Gy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~ 378 (426)
||+||||+||++||++|++||..||+++++
T Consensus 250 Gh~QRGG~Ps~~Dr~la~~lG~~Av~~l~e 279 (279)
T pfam00365 250 GHVQRGGTPTAFDRILASRMGAEAVEALLE 279 (279)
T ss_pred CHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 810059999899999999999999999729
No 14
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=0 Score=585.76 Aligned_cols=350 Identities=17% Similarity=0.191 Sum_probs=279.9
Q ss_pred HHHHHHHHHHHHCCHHH-CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCC
Q ss_conf 88868999987332121-03487633799983687751489999999999998569978999838366010799130462
Q gi|254780227|r 6 SYISNLDMWILTGVLSF-LEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITE 84 (426)
Q Consensus 6 ~~~~~~~~~~~~g~~~~-~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~ 84 (426)
+|..+++.|..+-.... .....+.+|||||||||||||||++||++|+++ ++.|++|||+++||+||++++ +.+
T Consensus 365 ~F~~~~~~~~~~~~~~~~~~~~~~~~rIaIlt~GgdapGMNAAiRA~Vr~~--~~~G~~v~gI~~Gf~GL~~g~---i~~ 439 (762)
T cd00764 365 SFDKNWNLYKLLAIELPQPLPEKTNLNIAIVNVGAPAAGMNAAVRSAVRYG--LAHGHRPYAIYDGFEGLAKGQ---IVE 439 (762)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEECCHHHHHCCC---EEE
T ss_conf 789999999986034777788667706999856889614779999999999--988999999925843674798---677
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf 69888874640787400336788865301110123456745699999999863998899948825789999999999851
Q gi|254780227|r 85 DMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEK 164 (426)
Q Consensus 85 l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~ 164 (426)
++|.+|.+|.+.|||+|||+|+.++ ++++.+.++|++++||+|++||||+|++++..|++.....
T Consensus 440 l~~~~V~g~~~~GGt~LgT~R~~p~---------------~~~~~~a~~l~~~~Id~LivIGG~gs~~ga~~L~~~r~~y 504 (762)
T cd00764 440 LGWIDVGGWTGRGGSELGTKRTLPK---------------KDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQY 504 (762)
T ss_pred CCHHHHCCHHHCCCEEECCCCCCCC---------------CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 7845638866468803265788973---------------4499999999981998899966807999999999756424
Q ss_pred -CCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCH
Q ss_conf -8996288522223477222114633565999999999999987751666169999769874289999874014332310
Q gi|254780227|r 165 -NYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDR 243 (426)
Q Consensus 165 -~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i 243 (426)
.++||+|+||+|||||+|+||+|||||||+|+++++||.|+++|.|+|+|+||||||||+|||||+++|||+||
T Consensus 505 ~~~~IP~v~IPaTIdNdv~GTd~siG~DTAlN~i~~aiD~Ir~sA~ssh~RvfVVEvMGr~~GylAl~sglA~GA----- 579 (762)
T cd00764 505 EEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAVGA----- 579 (762)
T ss_pred CCCCCCEEEEECCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCC-----
T ss_conf 345886797312130799786040158869999999998776414224775899994786622999987786367-----
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH---HHC-CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 1111111000145765232878655989999999998---502-895389950421111110123201122222344454
Q gi|254780227|r 244 NYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKV---MEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHI 319 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~---~~~-~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~ 319 (426)
+.+||||.+|+++.+.+.++.. ++. ++...++..|....
T Consensus 580 ---------------~~i~iPEe~~~l~~l~~di~~l~~~~~~~~~~g~~~~~~~~~e---------------------- 622 (762)
T cd00764 580 ---------------DAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLRNEKCNE---------------------- 622 (762)
T ss_pred ---------------CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC----------------------
T ss_conf ---------------2899558888989999999999998754221473588998536----------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---------------CCCCEE
Q ss_conf 43556648999999998718743188418861235589867999999999999999977---------------998669
Q gi|254780227|r 320 LLDKMNVGSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAIS---------------GISGVT 384 (426)
Q Consensus 320 ~l~~~~i~~~La~~i~~~~~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~---------------G~sgvm 384 (426)
..+...+.++++++.+..+ ..|+++|||+||||.||+|||++|++||.+||+++.+ -.|.++
T Consensus 623 ~~~~~~~~~l~~ee~k~~f---d~R~tVLGHvQrGGsPSp~DRilAtR~g~kAVe~ie~~~~~~~~~~~~~~~~~~~~~~ 699 (762)
T cd00764 623 NYTTVFTYELYSEEGKGVF---DCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAMKWIEQKLKENYAAGNEFANDPDFNCV 699 (762)
T ss_pred CCHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf 6227889999999733876---5301324703589999878889999999999999999876422356510268982489
Q ss_pred EEEECCCEEEEEEEHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 999859869964308985268820777589999998
Q gi|254780227|r 385 GEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILR 420 (426)
Q Consensus 385 v~i~~~~~~~~~i~~~~i~~~k~vd~~~~~~~~~l~ 420 (426)
.+++.....+.|+....-..-+..-|..+||..+.+
T Consensus 700 ~g~~~~~~~f~p~~~~~~td~~~r~pk~~wW~~lr~ 735 (762)
T cd00764 700 NGVKKYAVLFEPVEELKQTTFEHRIPKEQWWLSLRP 735 (762)
T ss_pred EEEECCEEEECCHHHHHHCCHHHCCCHHHHHHHHHH
T ss_conf 976143688660687644444106868789884789
No 15
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=0 Score=543.39 Aligned_cols=376 Identities=22% Similarity=0.264 Sum_probs=304.6
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCCCCCC
Q ss_conf 3379998368775148999999999999856997899983836601079913046269888874640787-400336788
Q gi|254780227|r 29 AHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGNSRVK 107 (426)
Q Consensus 29 ~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~LgtsR~~ 107 (426)
..||||+.|||+|||.||||+|++++++..+++.++|||.+|+.||++++++++++ +.++.+.++|| ++|||+|.+
T Consensus 72 plriGvvlsGgqAPGghNVI~Gl~d~lk~~n~~s~l~GF~~G~~Gl~~~~~~elt~---~~i~~~rN~GGFd~lgs~r~k 148 (557)
T PRK07085 72 PLKVGVILSGGQAPGGHNVIAGLFDGLKKFNPDSKLFGFIGGPLGLLNNKYIELTE---EVIDEYRNTGGFDMIGSGRTK 148 (557)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCEEEECH---HHHHHHHCCCCCCEECCCCCC
T ss_conf 81799996279998378889999999997689977999877704440697799489---999987628885243068654
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--CCC
Q ss_conf 865301110123456745699999999863998899948825789999999999851899628852222347722--211
Q gi|254780227|r 108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII--PIH 185 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~--~td 185 (426)
+. ++++++++.++++++++|+||+||||||++.|+.|+||+.+++.+++||||||||||||. .+|
T Consensus 149 i~-------------t~e~~~~~~~t~~~l~LdgLviiGGd~sntnAa~LAEyf~~~~~~t~VIGvPkTidgDLkn~~ie 215 (557)
T PRK07085 149 IE-------------TEEQKEACLQTVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHNCKTQVIGVPKTIDGDLKNEFIE 215 (557)
T ss_pred CC-------------CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 58-------------99999999999998599879997988721638999999998299837993352147877766404
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHH-----------------
Q ss_conf 463356599999999999998775166616999976987428999987401433231011111-----------------
Q gi|254780227|r 186 QSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDG----------------- 248 (426)
Q Consensus 186 ~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~----------------- 248 (426)
.|||||||++++++.|.|++.||.|+.++||||++|||+++|+||+|||+|+|++++|.|+..
T Consensus 216 ~sfGFdTa~k~yselIGNl~~Da~Sa~KYwHFVrlMGRsASHiaLECaLQThPNi~lI~EEv~~k~~TL~~Iv~~I~d~I 295 (557)
T PRK07085 216 TSFGFDTATKTYSEMIGNISRDALSAKKYWHFIKLMGRSASHIALECALQTHPNICLISEEIAEKNISLDDIVHYIASVI 295 (557)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 55362236889999999999875015760799998168610788888751388789767999871796999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----CCCCE--EEEEECCCC---CCC---------CHHHHHHCCCC
Q ss_conf 1100014576523287865598999999999850----28953--899504211---111---------10123201122
Q gi|254780227|r 249 FIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVME----KKGSV--AIFVSEGAC---RDV---------IMDNRLSSGEK 310 (426)
Q Consensus 249 ~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~----~~~~~--vIVvsEG~~---~~~---------~~~~~~~~~~~ 310 (426)
..+...++...+|||||..++..+.++.+.+.++ ..... -+-..+... ... ..+......-.
T Consensus 296 ~~Ra~~GknyGviLIPEGLiefIPe~k~LI~ELn~ll~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~lf~sLP~~I~~qLl 375 (557)
T PRK07085 296 ADRAAKGKNFGVILIPEGLIEFIPEMKSLIKELNSLLAENDSEFKGLDTEAQREYIISKLSPESQKLFSSLPEDIARQLL 375 (557)
T ss_pred HHHHHCCCCCEEEEECCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHH
T ss_conf 99997599865999462387627789999999999997344321123411457899884699999999966499999986
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC----------CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2223444544355664899999999871874----------318841886123558986799999999999999997799
Q gi|254780227|r 311 IKRDSFGHILLDKMNVGSWFADKFANMIKAE----------RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGI 380 (426)
Q Consensus 311 ~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~----------~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~ 380 (426)
.+||+|||++++.++++++|++++++++..+ ...+|.+||+.||+.||.||+.|||.||+.|..++.+|.
T Consensus 376 ldrD~hGnvqvs~IeTEkLL~~lV~~eL~~~k~~g~y~g~F~~~~HffGYEgRca~PSnFD~~Y~YaLG~~A~~Li~~g~ 455 (557)
T PRK07085 376 LDRDPHGNVQVSKIETEKLLIELVSKELEKLKPEGEYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAGLLVLNGK 455 (557)
T ss_pred HCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 34288898656423199999999999999998658647514046421003646779871046989988899999996699
Q ss_pred CCEEEEEECC-----CEEEEEEEHHHHCC-------------CCCCCCCHHHHHHHHH
Q ss_conf 8669999859-----86996430898526-------------8820777589999998
Q gi|254780227|r 381 SGVTGEDERE-----NNILRIIKFEDIRG-------------GRVFDTNTPWFSDILR 420 (426)
Q Consensus 381 sgvmv~i~~~-----~~~~~~i~~~~i~~-------------~k~vd~~~~~~~~~l~ 420 (426)
||+|+++++- .+....+|+..+.+ +-.||.++..|+.+..
T Consensus 456 tGYma~I~nL~~~~~~W~~~giPlt~mM~ve~r~G~~~pvIkk~lVdL~g~~fk~~~~ 513 (557)
T PRK07085 456 TGYMSTIKNLASPYTEWIAGAVPLTMMMNMERRKGKEKPVIKKALVDLDGPPFKKFAK 513 (557)
T ss_pred CEEEEEECCCCCCHHHEEECCCHHHHHCCHHHHCCCCCCCCCCCEECCCCHHHHHHHH
T ss_conf 4599984377788778688710177650847547961432114416889889999999
No 16
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=0 Score=540.59 Aligned_cols=377 Identities=18% Similarity=0.196 Sum_probs=308.4
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCCCCC
Q ss_conf 63379998368775148999999999999856997899983836601079913046269888874640787-40033678
Q gi|254780227|r 28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGNSRV 106 (426)
Q Consensus 28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~LgtsR~ 106 (426)
.+.||||+.|||||||.||||+|+.++++..+++.++|||.+|..||++++++++++ +.++.+.++|| ++|||+|.
T Consensus 71 ~~l~vGvvlsGgqAPGGHNVI~Gl~d~lk~~n~~s~l~GF~~Gp~Gl~~~~~~eit~---~~i~~yrN~GGfdmi~sgr~ 147 (550)
T cd00765 71 PKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNA---EYIQPYRNTGGFDMICSGRT 147 (550)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEEEECH---HHHHHHHCCCCCCCCCCCCC
T ss_conf 871899998579999515749879999996498877999757842320696798089---99987651888510368856
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCC
Q ss_conf 886530111012345674569999999986399889994882578999999999985189962885222234772--221
Q gi|254780227|r 107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI--IPI 184 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi--~~t 184 (426)
++. ++++++++.++++++++|+||+||||+|++.|+.|+||+.+++.+++|||||||||||| +.+
T Consensus 148 ki~-------------t~eq~~~~~~~~~~l~LdgLVIiGGddSnTnaa~LAEyf~~~~~~t~VIGvPkTIdgDLkn~~I 214 (550)
T cd00765 148 KIE-------------TEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEI 214 (550)
T ss_pred CCC-------------CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCC
T ss_conf 248-------------9999999999999859987999689873487999999999649995599345364488778862
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHH----------------
Q ss_conf 1463356599999999999998775166616999976987428999987401433231011111----------------
Q gi|254780227|r 185 HQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDG---------------- 248 (426)
Q Consensus 185 d~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~---------------- 248 (426)
|.|||||||++++++.|.|+++||.|+.++||||++|||+++|+||+|||+|+|++|+|.|+..
T Consensus 215 E~sfGFDTa~k~yselIgNl~~Da~Sa~KYwHFIklMGRsaSHiaLEcaLQThPNi~lI~EEv~~k~~TL~~Iv~~I~d~ 294 (550)
T cd00765 215 ETSFGFDTATKIYSELIGNVMRDARSTGKYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDV 294 (550)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHHCCCCHHHHHHHHHHH
T ss_conf 55425045788999999999976500476079999816861078887766228989986799886479699999999999
Q ss_pred -HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----CCC--CEEEEEECCCCCCCCH--------------HHHHHC
Q ss_conf -1100014576523287865598999999999850----289--5389950421111110--------------123201
Q gi|254780227|r 249 -FIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVME----KKG--SVAIFVSEGACRDVIM--------------DNRLSS 307 (426)
Q Consensus 249 -~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~----~~~--~~vIVvsEG~~~~~~~--------------~~~~~~ 307 (426)
..+...++...+|||||..++..+.++.+.+.++ .+. ...+.. +.....+.. +.....
T Consensus 295 I~~Ra~~GknyGviLIPEGLiefIPe~k~Li~Eln~~l~~~~~~~~~l~~-~~~~~~~i~~~ls~~~~~lf~~LP~~i~~ 373 (550)
T cd00765 295 ICKRAELGYNFGVVLVPEGLIEFIPEVKELIAELNEILANEVVEFNGLWK-KKLTEQSLKLFDLLPKGVYLPLFIEAIQE 373 (550)
T ss_pred HHHHHHCCCCCEEEEECCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHCCHHHHHHHHHCCHHHHH
T ss_conf 99999759986499956058876888999999999998615442113453-10028999860888799999856799999
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC----------EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 12222234445443556648999999998718743----------18841886123558986799999999999999997
Q gi|254780227|r 308 GEKIKRDSFGHILLDKMNVGSWFADKFANMIKAER----------SIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAI 377 (426)
Q Consensus 308 ~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~----------~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~ 377 (426)
.-..+||+|||++++.++++++|++++++++..++ ..+|.+||+.||+.||.||+.|||.||+.|..++.
T Consensus 374 qLlldrD~hGnvqvs~IeTEkLL~~lV~~eL~~~k~~g~y~g~F~~~~HffGYEgRca~PSnFD~~Y~YaLG~~A~~li~ 453 (550)
T cd00765 374 QLMLERDPHGNVQVSRIETEKLLIQMVETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLN 453 (550)
T ss_pred HHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87433377788657530599999999999999998629604644314200345513779973156989988899999997
Q ss_pred CCCCCEEEEEECC-----CEEEEEEEHHHHCC-------------CCCCCCCHHHHHHHHHH
Q ss_conf 7998669999859-----86996430898526-------------88207775899999984
Q gi|254780227|r 378 SGISGVTGEDERE-----NNILRIIKFEDIRG-------------GRVFDTNTPWFSDILRH 421 (426)
Q Consensus 378 ~G~sgvmv~i~~~-----~~~~~~i~~~~i~~-------------~k~vd~~~~~~~~~l~~ 421 (426)
+|.||+|+++++- ++....+|+..+.+ +..||.++..|+.+...
T Consensus 454 ~g~tGYmasI~nL~~~~~~W~~~giPlt~mM~~e~r~g~~~pvI~k~~VdL~g~~fk~~~~~ 515 (550)
T cd00765 454 SGKTGYISSVGNLAAPVEEWTVGGVPLTMLMNMERRHGKFKPVIKKALVDLEGAPFKKFASL 515 (550)
T ss_pred CCCCEEEEEECCCCCCHHHEEECCEEHHHHCCHHHHCCCCCCCCCCCEECCCCHHHHHHHHH
T ss_conf 79941799834766886675786300776503375369767641264237796899999999
No 17
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161 Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal). Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis. For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=536.92 Aligned_cols=356 Identities=19% Similarity=0.222 Sum_probs=293.8
Q ss_pred HHHHHHHHHHHHHHHCCHHHCCC-CCCEE--EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-
Q ss_conf 68888868999987332121034-87633--799983687751489999999999998569978999838366010799-
Q gi|254780227|r 3 EFLSYISNLDMWILTGVLSFLEK-DMVAH--KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDD- 78 (426)
Q Consensus 3 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~k--rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~- 78 (426)
+|.+++..|..-=..-.-+.+.+ +.+-+ ||||++.|.||+|||+|+|++|+++ +++|++||||+|||.||++++
T Consensus 373 eF~~~~~~~~~~s~~~~~~~~~~~~~~r~~~R~AIihvGAPA~GMNaA~R~avr~~--~~~Gh~v~aI~nGf~GL~~~~D 450 (777)
T TIGR02478 373 EFVENLATFLELSKPDQDKKLVPSKADRLNLRVAIIHVGAPAGGMNAATRAAVRYA--LARGHTVIAIHNGFSGLARGDD 450 (777)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEEECCCHHCCCCCC
T ss_conf 35775444776203378886777543567420799964888530239999999998--5069879998168410022888
Q ss_pred ---CEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf ---13046269888874640787400336788865301110123456745699999999863998899948825789999
Q gi|254780227|r 79 ---KITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTAC 155 (426)
Q Consensus 79 ---~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~ 155 (426)
...+++|.|.+|++|.+.|||+|||-|.-| ++.++..++..|++++||+|+||||+.++.++.
T Consensus 451 DtPicsvrEL~W~dV~gW~~~GGS~lGTnR~lP--------------~~~d~~~iA~~f~~~kiDgL~IIGGFEAf~al~ 516 (777)
T TIGR02478 451 DTPICSVRELTWSDVEGWVGEGGSELGTNRELP--------------NGKDLGEIAYKFQKHKIDGLLIIGGFEAFEALL 516 (777)
T ss_pred CCCEEEEEEECCCCCHHHHCCCCCCCCCCCCCC--------------CCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf 974331222023444233428876216778977--------------865389999999860988799976036889999
Q ss_pred HHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 99999985-18996288522223477222114633565999999999999987751666169999769874289999874
Q gi|254780227|r 156 DLLRYLKE-KNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAH 234 (426)
Q Consensus 156 ~L~e~~~~-~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~al 234 (426)
+|.+...+ ..+.||++.||.||+|++||||||+|-|||+|.+++.+|+|++.|.+|.+|+|||||||++|||||.++||
T Consensus 517 qL~~aR~~YP~F~IPmv~iPATISNNVPGTe~SLG~DTaLN~i~~~cD~IkqSA~askrRvFVvEtmGG~sGYLAt~~GL 596 (777)
T TIGR02478 517 QLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDKIKQSASASKRRVFVVETMGGYSGYLATMAGL 596 (777)
T ss_pred HHHHHHHHCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 99999861885578857866601077872443022015777899872632235301147569999708971689999988
Q ss_pred HCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH---HHHHHHHC-----CCCEEEEEECCCCCCCCHHHHHH
Q ss_conf 01433231011111110001457652328786559899999---99998502-----89538995042111111012320
Q gi|254780227|r 235 CYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIE---RLSKVMEK-----KGSVAIFVSEGACRDVIMDNRLS 306 (426)
Q Consensus 235 a~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~---~i~~~~~~-----~~~~vIVvsEG~~~~~~~~~~~~ 306 (426)
|+|| +.+||||.+|+++.|-+ .+++.++. +..-+|+-+|.++..
T Consensus 597 a~GA--------------------~a~Yi~Eegi~l~~L~~Di~~L~~~fa~~~g~n~~~~L~lRNE~AS~~-------- 648 (777)
T TIGR02478 597 ATGA--------------------DAAYIPEEGISLKDLQEDIEHLKEKFAEGAGKNRAGKLILRNENASKN-------- 648 (777)
T ss_pred HHCC--------------------EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC--------
T ss_conf 6462--------------------478864789788999999999998630047863014316640223312--------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-------
Q ss_conf 11222223444544355664899999999871-8743188418861235589867999999999999999977-------
Q gi|254780227|r 307 SGEKIKRDSFGHILLDKMNVGSWFADKFANMI-KAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAIS------- 378 (426)
Q Consensus 307 ~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~-~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~------- 378 (426)
...+.+++.+.|+. +....|..+|||+|.||.||||||.+|++||..|++++.+
T Consensus 649 ------------------ytTd~i~~ii~EE~kG~F~~R~~vlGH~QQGG~PSPfDR~~a~rlA~rA~~~i~~~~~~~~~ 710 (777)
T TIGR02478 649 ------------------YTTDFIARIISEEAKGRFDARTAVLGHMQQGGSPSPFDRVRATRLAIRAVDFIEEKIKANKS 710 (777)
T ss_pred ------------------CCHHHHHHHHHHHHCCCCCCCEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ------------------27589999999982694401200277020598888667888999999999999998640765
Q ss_pred ------CC------CCEEEEEECCCEEEEEEE--H-HHHCCCCCCCCCHHHHHHHHH
Q ss_conf ------99------866999985986996430--8-985268820777589999998
Q gi|254780227|r 379 ------GI------SGVTGEDERENNILRIIK--F-EDIRGGRVFDTNTPWFSDILR 420 (426)
Q Consensus 379 ------G~------sgvmv~i~~~~~~~~~i~--~-~~i~~~k~vd~~~~~~~~~l~ 420 (426)
-+ |-++.+++..++.+.|+. . ..-...+..-|..+||.++-.
T Consensus 711 ~~~~~~~~~~~~~~s~~viGi~gS~~~F~pv~G~~~~~eT~~~~R~PK~~wWl~Lr~ 767 (777)
T TIGR02478 711 ADKLAADDTKELTDSAVVIGIRGSNVLFTPVKGQLLAKETDFEHRRPKEQWWLDLRP 767 (777)
T ss_pred HHHCCCCCCHHHHCEEEEEEEECCCCEEECCCCCHHHHCCCHHHCCCHHHHHHHHHH
T ss_conf 111123434011050689868737214613466503231023206880787976637
No 18
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=0 Score=542.55 Aligned_cols=379 Identities=20% Similarity=0.188 Sum_probs=311.5
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCC
Q ss_conf 48763379998368775148999999999999856997899983836601079913046269888874640787-40033
Q gi|254780227|r 25 KDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGN 103 (426)
Q Consensus 25 ~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~Lgt 103 (426)
+-.-+-||||+.|||+|||.||||+|++++++..++..++|||.+|..||++++++++++ +.++.++++|| ++|||
T Consensus 175 ~~~~~LrVGVvLSGGqAPGGHNVI~GlfD~lK~~Np~S~L~GFlgGp~Gl~~~~y~EiT~---e~i~~YRN~GGFDmIgS 251 (1439)
T PTZ00287 175 KGGNILKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITD---SLMNRFRNLGGFNMLWS 251 (1439)
T ss_pred CCCCEEEEEEEEECCCCCCCCEEEHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEEEECH---HHHHHHHCCCCCCEECC
T ss_conf 888358999996479999864031526899986498787987567843322686599359---99986333888533215
Q ss_pred CCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-
Q ss_conf 6788865301110123456745699999999863998899948825789999999999851899628852222347722-
Q gi|254780227|r 104 SRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII- 182 (426)
Q Consensus 104 sR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~- 182 (426)
+|.|+- .+++++++.++++++++|+||+||||||++.|+.||||+++++++++|||||||||+||.
T Consensus 252 GR~KIe-------------t~EQ~~~a~~t~~~L~LdgLVIIGGDdSNTNAA~LAEYf~~~~~~t~VIGvPKTIDGDLKn 318 (1439)
T PTZ00287 252 GRGKVK-------------NKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALIAEYFAERNIPISIIGIPKTIDGDLKS 318 (1439)
T ss_pred CCCCCC-------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 853237-------------9999999999999728987999848997488999999999669995798157441575557
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHH-------------
Q ss_conf -211463356599999999999998775166616999976987428999987401433231011111-------------
Q gi|254780227|r 183 -PIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDG------------- 248 (426)
Q Consensus 183 -~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~------------- 248 (426)
.+|.|||||||+++++|.|.|++.||.|+.++||||++|||+|+|+||+|||+|+|++++|.|+.+
T Consensus 319 ~~IEtSFGFDTA~K~YSElIGNI~~Da~Sa~KYyHFIkLMGRSASHIALECALQThPNi~lIgEEV~~kk~TL~~Iv~~I 398 (1439)
T PTZ00287 319 EAIEISFGFDTATKTYSEIIGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQTRPNIVLIGEEVEKEKLSLKDIVKNI 398 (1439)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCHHHHHHHH
T ss_conf 80511456331389999999899988631365259998226326789999875038757987398886379899999999
Q ss_pred ----HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC----CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf ----11000145765232878655989999999998502----8953899504211111101232011222223444544
Q gi|254780227|r 249 ----FIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK----KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHIL 320 (426)
Q Consensus 249 ----~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~~----~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~ 320 (426)
..+...++...+|||||..+++.+.++.+...++. .....--+.|....-...+.....+-..+||+||+++
T Consensus 399 ~d~I~~Ra~~GknyGViLIPEGLIEFIPE~k~LI~ELN~lL~~~~~~~~~l~~s~~~~~~LP~~Iq~QLLldRDpHGNvq 478 (1439)
T PTZ00287 399 VNIILKRKSLNKNYGVILIPEGLIEFVPEIKILIGELNVILKDGPFDADKLKHSKEVWDFLPPIIRDQLLMDRESTGYIQ 478 (1439)
T ss_pred HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEE
T ss_conf 99999999749974189913506551188999999999998467643456688999998677999999852538888885
Q ss_pred CCCCCHHHHHHHHHHHHHCCC-------CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC---
Q ss_conf 355664899999999871874-------3188418861235589867999999999999999977998669999859---
Q gi|254780227|r 321 LDKMNVGSWFADKFANMIKAE-------RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERE--- 390 (426)
Q Consensus 321 l~~~~i~~~La~~i~~~~~~~-------~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~--- 390 (426)
++.+.++++|++++++++..+ ....|++||+.||+.||.||+.|||.||+.|..++.+|+||+|.++++-
T Consensus 479 VS~IeTEkLL~~lV~~eL~k~~~~~~~f~~~~HFfGYEGRca~PSNFD~~YcYaLG~~A~~Li~~g~tGYMa~V~NL~~~ 558 (1439)
T PTZ00287 479 VGKIATERLIIVLVESELAKLNDKNLNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDS 558 (1439)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCC
T ss_conf 22213999999999999999751587740332003346656899867458888877899999964886057343012678
Q ss_pred --CEEEEEEEHHHHCC--------------CCCCCCCHHHHHHHH
Q ss_conf --86996430898526--------------882077758999999
Q gi|254780227|r 391 --NNILRIIKFEDIRG--------------GRVFDTNTPWFSDIL 419 (426)
Q Consensus 391 --~~~~~~i~~~~i~~--------------~k~vd~~~~~~~~~l 419 (426)
.+...-+|+..+.+ +-.||.+++.|+.+-
T Consensus 559 ~~eW~~~GiPlt~mM~v~~~~~Gk~~PvIkK~LVdL~G~~Fk~f~ 603 (1439)
T PTZ00287 559 YANWIPAAIPFLRIMHVIKDNTGKEFPAVKRYLVDLNSPLFNVLK 603 (1439)
T ss_pred HHHCEECCCCHHHHHCHHHHCCCCCCCEEEEEHHCCCCHHHHHHH
T ss_conf 877566644068763332313798665342201036777789999
No 19
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=0 Score=434.89 Aligned_cols=357 Identities=19% Similarity=0.168 Sum_probs=283.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCCCCCCC
Q ss_conf 379998368775148999999999999856997899983836601079913046269888874640787-4003367888
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGNSRVKL 108 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~LgtsR~~~ 108 (426)
-||||+.+|.++||.++||||+++++..+ +..++||+ |..||+.+.++++++ ++++.+.++|| .++|.+..+.
T Consensus 855 lRIGiv~~grQsPG~~NViwGL~~~l~~~--~~~~i~F~-G~~Gl~~~k~lei~~---~~l~~~~NQGG~el~grt~~~~ 928 (1439)
T PTZ00287 855 IKIGIVFLSRQAPGAMNVLCGLYHRLKLL--KGVCIAFY-GLYGLLHNKYIIIDD---DNIAKHLNQGGLELTGNSPEHS 928 (1439)
T ss_pred EEEEEEEECCCCCCCCHHHHHHHHHHHHH--CCEEEEEE-CHHHHHCCCEEEEEH---HHHHHHHCCCCEEEECCCHHHH
T ss_conf 49989984578987312167689999860--57489985-335552485699705---7767643276704423645644
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCC
Q ss_conf 6530111012345674569999999986399889994882578999999999985189962885222234772--22114
Q gi|254780227|r 109 TNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI--IPIHQ 186 (426)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi--~~td~ 186 (426)
. ...++++++.+++.++++|+||+|||++|++.|+.|+|||.++++.++|||||+|+|||| +.+|.
T Consensus 929 l------------~~~e~~~~~~~Tc~~L~LDGLViiGg~~s~T~AA~LaEyFl~~~~kT~VIGVP~TidndLk~~~IEt 996 (1439)
T PTZ00287 929 L------------FDKENRNKVCETVTKLQLNGLVMPGSNITITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIET 996 (1439)
T ss_pred H------------CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEEE
T ss_conf 0------------5888899999999864886289957874213789999999973997159964332478767762101
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHH-----------------HH
Q ss_conf 6335659999999999999877516661699997698742899998740143323101111-----------------11
Q gi|254780227|r 187 SLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYID-----------------GF 249 (426)
Q Consensus 187 tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~-----------------~~ 249 (426)
|+|||||++.+++.|.|+++||.|++++|+||++|||.++|++|+|||+|+|++++|.|+. ..
T Consensus 997 cvGFDT~tKvyasLIGNvltDA~Sa~KYwhFIRLMGR~aSHivLECALQTHPNvViI~EEv~~~k~TL~~Iv~~IaD~Vc 1076 (1439)
T PTZ00287 997 CVGFDSSTKVYASLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVC 1076 (1439)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 10542278899999988887641266227986200465047788775514896898638855431659999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-------CCCE--------EEEEECCC-----------------C-
Q ss_conf 1000145765232878655989999999998502-------8953--------89950421-----------------1-
Q gi|254780227|r 250 IFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK-------KGSV--------AIFVSEGA-----------------C- 296 (426)
Q Consensus 250 ~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~~-------~~~~--------vIVvsEG~-----------------~- 296 (426)
.+...+++..+|||||..++..+.++.+-+.++. ++.. .+-...+. .
T Consensus 1077 kRAe~gKnyGvVLIPEgLI~~IPe~k~Li~Eln~~L~~a~e~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~ 1156 (1439)
T PTZ00287 1077 ARADLGKNYGTVLIPDALLMHLPHMKILLSEISDILNDANEKGQLLEARNDLVNLSTTQGAAAGTAGTAGTVAGADHGHL 1156 (1439)
T ss_pred HHHHCCCCCCEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88750876737980368987677899999999999975202001445444321432123554332212333442101222
Q ss_pred -CC-------CCHHHHHHCCC----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC----------EEEECCCCCCCC
Q ss_conf -11-------11012320112----222234445443556648999999998718743----------188418861235
Q gi|254780227|r 297 -RD-------VIMDNRLSSGE----KIKRDSFGHILLDKMNVGSWFADKFANMIKAER----------SIVQKSGYFARS 354 (426)
Q Consensus 297 -~~-------~~~~~~~~~~~----~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~----------~~~~~lGy~qRg 354 (426)
.+ |....+.+..+ ........+.+++.++++++|++++++++..++ ..++.+||+.||
T Consensus 1157 ~~~~~skLtPwS~ALF~slP~~I~~elL~~d~~~~q~s~IETE~LL~~lVe~EL~~RK~~G~YkG~F~~~~HFFGYQGR~ 1236 (1439)
T PTZ00287 1157 ASEWVLKLTPWSLALLKTFPQFIIKELLHVDLRSMRFEKLETEQLLLQMVKEELHDRKQKGKYSGSFMGLTHFFGYQGRS 1236 (1439)
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCEECEEEEEEECCCCC
T ss_conf 10344317988999997513999999824882100255524999999999999999864473233231022011103436
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-----CEEEEEEEHHHHCC
Q ss_conf 589867999999999999999977998669999859-----86996430898526
Q gi|254780227|r 355 APSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERE-----NNILRIIKFEDIRG 404 (426)
Q Consensus 355 g~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~-----~~~~~~i~~~~i~~ 404 (426)
+.||.||+.|||.+|+.|..++..|.||+|+.+.+- .+.+..+|+..+..
T Consensus 1237 alPS~FDc~l~YalGh~A~ilvesGlTGym~sIr~L~~~v~dW~~~aiP~t~LM~ 1291 (1439)
T PTZ00287 1237 SLPSEFDCKLAYAYGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMK 1291 (1439)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCEECCCHHHHHHE
T ss_conf 6886456688888788999999659825774300235778880645330666540
No 20
>KOG2440 consensus
Probab=100.00 E-value=0 Score=351.08 Aligned_cols=298 Identities=22% Similarity=0.279 Sum_probs=243.4
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 98368775148999999999999856997899983836601079913046269888874640787400336788865301
Q gi|254780227|r 34 FLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSD 113 (426)
Q Consensus 34 IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~ 113 (426)
|+|||||+||||+++|++++.+ ++.+.++|+++.||+||+++.. .+.+..|..+++|.+.||+++||.|++.+...+
T Consensus 1 v~tsggd~~gmnaavr~~vr~~--i~~g~~~~~i~egy~gl~~g~~-~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~ 77 (666)
T KOG2440 1 VLTSGGDSQGMNAAVRAVVRMG--IYRGCKVYLIYEGYEGLVRGGD-SIKEAQWLRVSYILSLGGTLIGTARCKAFRGRE 77 (666)
T ss_pred CCCCCCCCCCCCHHHHHHHHHC--CCCCCEEEEEECCCCCCCCCCC-CHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9277889888208899887732--2347548898517644346543-210036665178656898014511130224664
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH-----------------HCCCCCEEEEECCC
Q ss_conf 1101234567456999999998639988999488257899999999998-----------------51899628852222
Q gi|254780227|r 114 CIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLK-----------------EKNYNITVVGLPKT 176 (426)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~-----------------~~~~~i~vigiPKT 176 (426)
.+. ++..++-+.+|+.|+++|||+|+++|+.+-.++. ..+.++.|+||+.+
T Consensus 78 gr~------------~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgs 145 (666)
T KOG2440 78 GRL------------AAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGS 145 (666)
T ss_pred CEE------------CCCHHHHHHHCCEEEECCCCCCHHHHHHCCCCCCCCCHHHHHCCEEECCCCCCCCCCEEEEEECC
T ss_conf 311------------26266788526756752896521365528500132134777505341233465676589998622
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 34772221146335659999999999999877516661699997698742899998740143323101111111000145
Q gi|254780227|r 177 IDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFK 256 (426)
Q Consensus 177 IDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~ 256 (426)
||||++++|.++|-|||+.. ++||.+..||.||+ |-|++|+|||+|||+|+.+++|+++
T Consensus 146 idnd~~g~~~~iG~dsal~r--e~id~~~~ta~sh~-RgFv~evmgr~cg~lalv~~ia~~a------------------ 204 (666)
T KOG2440 146 IDNDMYGTDMTIGIDSALHR--EAIDAITSTAQSHS-RGFVAEVMGRHCGYLALVAAIAGGA------------------ 204 (666)
T ss_pred CCCCCCCCCEEECCCCCHHH--HHHHHHHHHHCCCC-CEEEEEEHHHCCCHHHHHHHHHCCC------------------
T ss_conf 35653165202235620104--45655554312676-4577330333366299887765278------------------
Q ss_pred CCCCCCCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 76523287865598-99999999985028953899504211111101232011222223444544355664899999999
Q gi|254780227|r 257 GIDGVYLPEMSFNL-EVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFA 335 (426)
Q Consensus 257 ~~d~iliPE~~~~~-~~~~~~i~~~~~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~ 335 (426)
|.+++||.|..- +++++.+.. ...++...|+|+||.......+ -+.+.+.+++.
T Consensus 205 --D~i~~pe~~~~~~~q~~~~l~~-~r~~Gln~viVigG~~~~~ga~----------------------i~ae~vk~~~~ 259 (666)
T KOG2440 205 --DTIFIPERPGEDPEQLCEILDS-IRKRGLNIVIVIGGAIDNTGAP----------------------IIAEEVKERKL 259 (666)
T ss_pred --CEEEECCCCCCCHHHHHHHHHH-HHHCCCCEEEEEECCCCCCCCC----------------------CCHHHHHHHHH
T ss_conf --8798348899988999999999-9867987799972455788880----------------------46999998641
Q ss_pred HHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEE
Q ss_conf 8718743188418861235589867999999999999999977998669999859869964
Q gi|254780227|r 336 NMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRI 396 (426)
Q Consensus 336 ~~~~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~ 396 (426)
+.+.. .++++++||+||++.|++|||++|.++|+.||.+++..... ++...+++-.|
T Consensus 260 k~lv~-g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s---~~~g~~~VRlm 316 (666)
T KOG2440 260 KVLVV-GVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAES---AENGNGIVRLM 316 (666)
T ss_pred HEEEE-CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHH---HCCCCCEEEEH
T ss_conf 04220-66044327544478464420678999999999999862621---20554066601
No 21
>KOG2440 consensus
Probab=100.00 E-value=3.7e-43 Score=297.94 Aligned_cols=387 Identities=16% Similarity=0.083 Sum_probs=282.7
Q ss_pred HHHCCHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEECCH----------------HHCCCCC
Q ss_conf 873321210348763379998368775148999999999999-85699789998383----------------6601079
Q gi|254780227|r 15 ILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYN-KILPKAELIYYRFG----------------YQGLLLD 77 (426)
Q Consensus 15 ~~~g~~~~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~-~~~~~~~v~G~~~G----------------~~GL~~~ 77 (426)
-+++|+++..+.....|++|+|+||.|||+|.+|+++|-... .++.--+.+|..-+ ++|++.+
T Consensus 106 a~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~e 185 (666)
T KOG2440 106 ARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAE 185 (666)
T ss_pred HHHCCCCCCCCCHHHHHCCEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 55285001321347775053412334656765899986223565316520223562010445655554312676457733
Q ss_pred CCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Q ss_conf 91304626988887464078740033678886530111012345674569999999986399889994882578999999
Q gi|254780227|r 78 DKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDL 157 (426)
Q Consensus 78 ~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L 157 (426)
...+. ......+..++..++++++++|... .++++..+++..++.++|.+|+|||+++.+++..+
T Consensus 186 vmgr~-cg~lalv~~ia~~aD~i~~pe~~~~--------------~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ 250 (666)
T KOG2440 186 VMGRH-CGYLALVAAIAGGADTIFIPERPGE--------------DPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPII 250 (666)
T ss_pred EHHHC-CCHHHHHHHHHCCCCEEEECCCCCC--------------CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 03333-6629988776527887983488999--------------88999999999986798779997245578888046
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 9999851899628852222347722211463356--59999999999999877516661699997698742899998740
Q gi|254780227|r 158 LRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGAL--TAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHC 235 (426)
Q Consensus 158 ~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfd--TA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala 235 (426)
+|+++++.....++++||||||||+-.+.+++|| ||++..+++|.+++.+|.++-+++.+|++|||.|+|+|+++++|
T Consensus 251 ae~vk~~~~k~lv~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla 330 (666)
T KOG2440 251 AEEVKERKLKVLVVGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLA 330 (666)
T ss_pred HHHHHHHHHHEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCEEEEHHHHHHHHHHHHHHH
T ss_conf 99999864104220660443275444784644206789999999999998626212055406660138889999999985
Q ss_pred CCCCCCCHHHHHHH----------------HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 14332310111111----------------10001457652328786559899999999985028953899504211111
Q gi|254780227|r 236 YLNMIQDRNYIDGF----------------IFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDV 299 (426)
Q Consensus 236 ~ga~~~~i~~~~~~----------------~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~~~~~~vIVvsEG~~~~~ 299 (426)
++...+..++..-. .+.......+.. +|+.-.. .......++...+.+++++|+..++.
T Consensus 331 ~~~~d~~l~~elr~~~f~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~ii~----~g~~~~~lnaa~~~~v~~a~~~G~~~ 405 (666)
T KOG2440 331 SRDKDFCLAPELRGRKFTLNLNTYKILDVVDPRAEQDPFYGE-IPGAIGL----FGAPAAGLNAAGHSVLRYAEGAGQDV 405 (666)
T ss_pred CCCCCEEHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCE-ECCCEEE----ECHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 266313202454132666556666554102552236887741-2011366----52155688998888988655068613
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC------EEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1012320112222234445443556648999999998718743------1884188612355898679999999999999
Q gi|254780227|r 300 IMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAER------SIVQKSGYFARSAPSGSEDLSLIKKMVVLAV 373 (426)
Q Consensus 300 ~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~------~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av 373 (426)
......+.+. .+|..++..+. +++.|+....++.+..+. ...+.+.|+.|.-+....|-.++..++..++
T Consensus 406 ~~i~~~~~gl--~~d~~~~~~~~--dv~~w~~~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l 481 (666)
T KOG2440 406 IAISNGFEGL--AKDALGELIWK--DVGLWLSQGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSAL 481 (666)
T ss_pred EEECCCHHHH--HHHHHHHHHHH--HHHHHHCCCCHHHEECCCCCCCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHH
T ss_conf 6631551133--44333244799--8641123685233131568420127776789997236510332315888889998
Q ss_pred HHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99977998669999859869964308985268820777589999998448898
Q gi|254780227|r 374 DSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILRHTGQKS 426 (426)
Q Consensus 374 ~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k~vd~~~~~~~~~l~~~gq~~ 426 (426)
+..+++.+++.+.+.+....+.+.- ........+|+...+|.++++.|.||+
T Consensus 482 ~g~~~~yt~f~i~~v~ip~t~snnv-pgt~~s~gvdt~~N~~~~~~d~t~Q~a 533 (666)
T KOG2440 482 HGARAGYTGFDIPMVNIPATYSNNV-PGTEFSLGVDTALNAWARVCDSTKQSA 533 (666)
T ss_pred HHHHCCCCCCCCCEEEEEEEECCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 6541389876533377630323776-032302550206767667763024776
No 22
>pfam01513 NAD_kinase ATP-NAD kinase. Members of this family include ATP-NAD kinases EC:2.7.1.23, which catalyses the phosphorylation of NAD to NADP utilising ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus. Also includes NADH kinases EC:2.7.1.86.
Probab=96.16 E-value=0.025 Score=34.48 Aligned_cols=58 Identities=29% Similarity=0.543 Sum_probs=40.3
Q ss_pred HHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH--HHHHHHHHHHHH
Q ss_conf 9863998899948825789999999999851899628852222347722211463356599--999999999998
Q gi|254780227|r 134 LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA--QVSACFFDNISN 206 (426)
Q Consensus 134 l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~--~~~a~~i~~l~~ 206 (426)
+.+.++|.++++|||||+-.+.+... ..++|++||+.- +.||-|.. +.+.++++++..
T Consensus 31 ~~~~~~Dlii~lGGDGT~L~~~~~~~-----~~~~PilGin~G----------~lGFL~~~~~~~~~~~l~~i~~ 90 (243)
T pfam01513 31 MVEEGVDLIVVLGGDGTALDAARLLG-----DHDIPILGINTG----------TLGFLTEFSPEEAAKLLDALLE 90 (243)
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEECC----------CCCEECCCCHHHHHHHHHHHHC
T ss_conf 30559889999898789999999845-----679958998569----------7631003698899999999871
No 23
>PRK02155 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.86 E-value=0.15 Score=29.47 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=73.2
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV 106 (426)
Q Consensus 27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~ 106 (426)
..-|||||+.- -+.|..-...+.+...+.. .|.+|+--..-. ... ++ .+.. ..+
T Consensus 3 ~~fk~Vgiv~k-~~~~~~~~~~~~l~~~L~~--~g~~v~~e~~~a----------------~~~-~~--~~~~--~~~-- 56 (291)
T PRK02155 3 SQFRTVALVGR-YQTPGIAEPLEALAACIAK--RGFEVVFEADTA----------------RNT-GL--TGYP--ALT-- 56 (291)
T ss_pred CCCCEEEEEEC-CCCHHHHHHHHHHHHHHHH--CCCEEEEEHHHH----------------HHC-CC--CCCC--CCC--
T ss_conf 87989999914-8986899999999999997--889999955577----------------763-99--8877--479--
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 88653011101234567456999999998639988999488257899999999998518996288522223477222114
Q gi|254780227|r 107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ 186 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~ 186 (426)
.+. + ..+.|-+|++|||||+-.+.+... .+++||+||=. =
T Consensus 57 --------------------~~~----~-~~~~Dlvi~lGGDGTlL~~a~~~~-----~~~~PilGiN~----------G 96 (291)
T PRK02155 57 --------------------PAE----I-GARADVAVVLGGDGTMLGIGRQLA-----PYGTPLIGINH----------G 96 (291)
T ss_pred --------------------HHH----H-CCCCCEEEEECCCHHHHHHHHHHH-----CCCCCEEEEEC----------C
T ss_conf --------------------799----4-637678999767889999999871-----15996899854----------7
Q ss_pred CCCHHHHH--HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 63356599--99999999999877516661699
Q gi|254780227|r 187 SLGALTAA--QVSACFFDNISNERSATPRSLII 217 (426)
Q Consensus 187 tiGfdTA~--~~~a~~i~~l~~~A~s~~~~~~i 217 (426)
++||-|.+ +.+.+.++++....-....|..+
T Consensus 97 ~lGFLt~~~~~~~~~~l~~i~~g~~~~~~R~~L 129 (291)
T PRK02155 97 RLGFITDIPLSDMQEALPPMLAGNYEEEERSLL 129 (291)
T ss_pred CEEECCCCCHHHHHHHHHHHHCCCCEEEEECEE
T ss_conf 513406887788999999998599779550218
No 24
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.63 E-value=0.032 Score=33.78 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=31.1
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 998899948825789999999999851899628852222347722211463356599
Q gi|254780227|r 138 GVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA 194 (426)
Q Consensus 138 ~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~ 194 (426)
+-|.+++||||||+-.|.+... ..++|++||=. =++||-|..
T Consensus 33 ~~DlviviGGDGT~L~a~~~~~-----~~~iPilGIN~----------G~lGFLt~~ 74 (259)
T PRK00561 33 GADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT----------GHLGFYTSF 74 (259)
T ss_pred CCCEEEEECCHHHHHHHHHHHC-----CCCCCEEEEEC----------CCCEEEECC
T ss_conf 9999999897199999999855-----47996899966----------973364158
No 25
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.70 E-value=0.088 Score=30.95 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=68.3
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV 106 (426)
Q Consensus 27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~ 106 (426)
|+.|||+|+.--+. |-.-.+.+.+.+.+.. +|.+|+-...+..- .+ .++. +.
T Consensus 1 m~lk~VlIV~k~~~-~~A~~~a~~l~~~L~~--rGi~v~~~~~~~~~---------~~-----------~~~~-~~---- 52 (304)
T PRK02645 1 MQLKLVIIAYKAGS-PQAKEAAERCAKQLEA--RGIKVLMGPSGPKD---------NP-----------YPVF-LA---- 52 (304)
T ss_pred CCCCEEEEEECCCC-HHHHHHHHHHHHHHHH--CCCEEEECCCCCCC---------CC-----------CCCC-CC----
T ss_conf 97459999985899-9999999999999998--88999984443444---------77-----------7620-01----
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 88653011101234567456999999998639988999488257899999999998518996288522223477222114
Q gi|254780227|r 107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ 186 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~ 186 (426)
-.....|-++++|||||+-.+.+... ..++||+||-- . =
T Consensus 53 ---------------------------~~~~~~Dlvi~lGGDGT~L~aar~~~-----~~~iPilGiN~------~---G 91 (304)
T PRK02645 53 ---------------------------SAEELPDLAIVLGGDGTVLAAARHLA-----PHDIPILSFNV------G---G 91 (304)
T ss_pred ---------------------------CCCCCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEEC------C---C
T ss_conf ---------------------------44668889999786889999999854-----26998899824------8---6
Q ss_pred CCCHHHH---HHHHHHHHHHHHHHHHHCCCCEEE-EEEC
Q ss_conf 6335659---999999999999877516661699-9976
Q gi|254780227|r 187 SLGALTA---AQVSACFFDNISNERSATPRSLII-HEVM 221 (426)
Q Consensus 187 tiGfdTA---~~~~a~~i~~l~~~A~s~~~~~~i-VEvM 221 (426)
++||-|- .....+.++++....-.-.+|..+ ++++
T Consensus 92 ~lGFLte~~~~~~~~~~l~~l~~g~~~ie~R~~L~~~v~ 130 (304)
T PRK02645 92 HLGFLTHPRDLLQDESVWDRLLEDRYAIERRMMLQARVF 130 (304)
T ss_pred EEEEECCCCCCCCHHHHHHHHHCCCEEEEEEEEEEEEEE
T ss_conf 469716764221178999999769928998778999999
No 26
>PRK13337 putative lipid kinase; Reviewed
Probab=94.56 E-value=0.14 Score=29.75 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 74569999999986399889994882578999-99999998518996288522223477222114633565999999999
Q gi|254780227|r 123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTA-CDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFF 201 (426)
Q Consensus 123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a-~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i 201 (426)
.+.+...+++.....+.|.++++|||||..-+ +-|++ .....++--||.=--||+. .++|.......+++
T Consensus 43 ~~g~a~~~a~~~~~~~~d~vv~~GGDGTv~evvngl~~----~~~~~~lgiiP~GTgNdfa---r~lgi~~~~~~a~~-- 113 (305)
T PRK13337 43 GPGDATLAARQAAERNFDLVIAAGGDGTLNEVVNGLAE----KENRPKLGIIPVGTTNDFA---RALGIPRDIEGAAD-- 113 (305)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHC----CCCCCEEEEEECCCCHHHH---HHCCCCCCHHHHHH--
T ss_conf 80289999999877799989999576289999999855----8998628997078745789---98198989999998--
Q ss_pred HHHHHHHHHCCCCEEEEEECCC
Q ss_conf 9999877516661699997698
Q gi|254780227|r 202 DNISNERSATPRSLIIHEVMGR 223 (426)
Q Consensus 202 ~~l~~~A~s~~~~~~iVEvMGR 223 (426)
.+.. ...+.+-+-++=+|
T Consensus 114 -~i~~---g~~~~iDlg~vn~~ 131 (305)
T PRK13337 114 -VIIE---GHSVPVDIGKANDR 131 (305)
T ss_pred -HHHC---CCEEEEEEEEECCE
T ss_conf -7616---97599877998999
No 27
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=94.49 E-value=0.22 Score=28.35 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 4569999999986399889994882578999999999985189962885222234772
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi 181 (426)
.++.+++++.+++.+.|.+|.|||--++..|..++.+ .++|+|.||-|--++-
T Consensus 70 ~~~v~~~~~~~~~~~~D~IiavGGGS~iD~AKaia~~-----~~~P~i~IPTtAgTgS 122 (366)
T PRK09423 70 DNEIDRLVAIAEENGCDVIIGIGGGKTLDTAKAVADY-----LGVPVVIVPTIASTDA 122 (366)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH-----CCCCEEEECCCCCCCC
T ss_conf 9999999999986499989993783887779999998-----2899799568666788
No 28
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.40 E-value=0.034 Score=33.65 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=65.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT 109 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~ 109 (426)
+||||+.--+ .|..-...+.+++.+.. +|++|+--..-+ +. .|. +-..+.
T Consensus 1 MKigIv~n~~-k~~a~~~a~~l~~~L~~--~g~~v~ld~~~~-------------------~~---~~~-~~~~~~---- 50 (278)
T PRK03708 1 MRFGIVARRD-KEEALKLAYRVYDFLKV--SGYEVVVDSDTY-------------------EH---LPQ-FSEEDV---- 50 (278)
T ss_pred CEEEEEEECC-CHHHHHHHHHHHHHHHH--CCCEEEEEHHHH-------------------HH---CCC-CCCCCC----
T ss_conf 9999992189-98999999999999998--899899974786-------------------56---665-555676----
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r 110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG 189 (426)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG 189 (426)
..+.+.+.|.++++|||||+-.|..++ ..++||+||-- | ++|
T Consensus 51 ----------------------~~~~~~~~Dlvi~lGGDGT~L~a~~~~------~~~iPilGiN~-------G---~lG 92 (278)
T PRK03708 51 ----------------------LPLEEFDVDFILAIGGDGTILRIEHKT------KKEIPILSINM-------G---TLG 92 (278)
T ss_pred ----------------------CCCCCCCCCEEEEECCCHHHHHHHHHC------CCCCCEEEEEC-------C---CCC
T ss_conf ----------------------754357878999987868999999964------78998898835-------8---753
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 565999--9999999999877516661699
Q gi|254780227|r 190 ALTAAQ--VSACFFDNISNERSATPRSLII 217 (426)
Q Consensus 190 fdTA~~--~~a~~i~~l~~~A~s~~~~~~i 217 (426)
|-|.++ .+.++++++...--.-..|..+
T Consensus 93 FLt~~~~~~~~~~l~~i~~g~y~ie~r~~l 122 (278)
T PRK03708 93 FLTEVEPEDTFFALSRLLEGEYYIDERIKL 122 (278)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 035568789999999997289747731379
No 29
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.21 E-value=0.075 Score=31.39 Aligned_cols=128 Identities=18% Similarity=0.208 Sum_probs=71.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT 109 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~ 109 (426)
+||||+.-- ..|.....++.+++.+.. ++.+|+ +...+...+..+. ..-....+...
T Consensus 1 MKIaIigk~-~~~~~~~~~~~Li~~L~~--~g~~v~-le~~~a~~l~~~~---------------~~~~~~~~~~~---- 57 (290)
T PRK01911 1 MKIAIFGQT-YQASKSPHIKRLFELLEE--HGAEIY-IEEEFLNFLTQDL---------------KFEPKYKGFFD---- 57 (290)
T ss_pred CEEEEECCC-CCHHHHHHHHHHHHHHHH--CCCEEE-EEHHHHHHHHHCC---------------CCCCCCCCCCC----
T ss_conf 999998888-984799999999999998--899899-9768978776512---------------56643123211----
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r 110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG 189 (426)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG 189 (426)
....+.|.++++|||||+-.|.+... ..++||+||-. =++|
T Consensus 58 ------------------------~~~~~~Dlvi~iGGDGT~L~a~~~~~-----~~~iPilGiN~----------G~lG 98 (290)
T PRK01911 58 ------------------------GNNFDFDMVISIGGDGTFLRAAARVG-----NSGIPILGINT----------GRLG 98 (290)
T ss_pred ------------------------CCCCCCCEEEEECCCHHHHHHHHHHH-----HCCCCEEEEEC----------CCCE
T ss_conf ------------------------35777779999787689999999861-----25996899944----------8813
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 56599--99999999999877516661699997
Q gi|254780227|r 190 ALTAA--QVSACFFDNISNERSATPRSLIIHEV 220 (426)
Q Consensus 190 fdTA~--~~~a~~i~~l~~~A~s~~~~~~iVEv 220 (426)
|-|.+ +.+-++++++....-.-..|..+ |+
T Consensus 99 FL~~~~~~~~~~~l~~i~~g~y~~~~r~~l-~~ 130 (290)
T PRK01911 99 FLADVSPEEIEETIDELLQGKYTIEERSLL-QL 130 (290)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEEEE-EE
T ss_conf 750368889999999998699789877259-99
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=94.21 E-value=0.059 Score=32.09 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=30.6
Q ss_pred HCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 63998899948825789999999999851899628852222347722211463356
Q gi|254780227|r 136 QSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGAL 191 (426)
Q Consensus 136 ~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfd 191 (426)
-.+.|.+|++||||||-.+.+... ..++|++||=. =++||-
T Consensus 23 ~~eaDliIvlGGDGT~L~a~r~~~-----~~~~PilGIN~----------G~lGFL 63 (246)
T PRK04761 23 IEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR----------GTVGFL 63 (246)
T ss_pred HHHCCEEEEECCCHHHHHHHHHHH-----CCCCCEEEEEC----------CCCCCC
T ss_conf 657999999898799999999874-----14993798977----------977754
No 31
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.20 E-value=0.15 Score=29.41 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=40.8
Q ss_pred HHHHHHHHHC-------CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHH--HHHHH
Q ss_conf 9999999863-------99889994882578999999999985189962885222234772221146335659--99999
Q gi|254780227|r 128 EVSAHHLMQS-------GVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTA--AQVSA 198 (426)
Q Consensus 128 ~~~~~~l~~~-------~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA--~~~~a 198 (426)
+.+.+-++++ +=|.+++||||||+-.|.+.... ...++|++||=. | ++||-|- .+...
T Consensus 18 ~~~~~~l~~~~~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~---~~~~vPilGIN~-------G---~lGFLt~~~~~~~~ 84 (265)
T PRK04885 18 SKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVHT-------G---HLGFYTDWRDFEVD 84 (265)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHC---CCCCCCEEEEEC-------C---CEEEECCCCHHHHH
T ss_conf 9999999876985587789999998873999999998630---367975898735-------8---52576147878999
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q gi|254780227|r 199 CFFDNISN 206 (426)
Q Consensus 199 ~~i~~l~~ 206 (426)
++++++..
T Consensus 85 ~~l~~i~~ 92 (265)
T PRK04885 85 KLVIALAK 92 (265)
T ss_pred HHHHHHHC
T ss_conf 99999982
No 32
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.05 E-value=0.074 Score=31.44 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=42.3
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHCCCC
Q ss_conf 39988999488257899999999998518996288522223477222114633565999--9999999999877516661
Q gi|254780227|r 137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQ--VSACFFDNISNERSATPRS 214 (426)
Q Consensus 137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~--~~a~~i~~l~~~A~s~~~~ 214 (426)
-++|-+|++|||||+-.|++... .+++||+||=- =++||-|.++ ..-+.++++...--.-.+|
T Consensus 67 ~~~Dl~IvlGGDGT~L~aar~~~-----~~~iPilGIN~----------G~LGFLt~i~~~~~~~~l~~il~g~y~ie~R 131 (305)
T PRK02649 67 SSMKFAIVLGGDGTVLSAARQTA-----PCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQLLAGQYTIEER 131 (305)
T ss_pred CCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEEC----------CCEEEECCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 77339999837699999999853-----36997898944----------8623404479889999999998299658886
Q ss_pred EEE
Q ss_conf 699
Q gi|254780227|r 215 LII 217 (426)
Q Consensus 215 ~~i 217 (426)
.++
T Consensus 132 ~~L 134 (305)
T PRK02649 132 TML 134 (305)
T ss_pred EEE
T ss_conf 568
No 33
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.94 E-value=0.082 Score=31.15 Aligned_cols=129 Identities=18% Similarity=0.220 Sum_probs=73.9
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV 106 (426)
Q Consensus 27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~ 106 (426)
..-|+|||+.-= ..|..-.....+.+.+.. ++.+|+- ..-....+ +....
T Consensus 3 ~~fk~IgIi~k~-~~~~a~~~~~~l~~~L~~--~g~~v~l-d~~~a~~l--------------------------~~~~~ 52 (292)
T PRK03378 3 NHFKCIGIVGHP-RHPTALTTHEMLYRWLCT--KGYEVIV-EQQIAHEL--------------------------QLKNV 52 (292)
T ss_pred CCCCEEEEEEEC-CCHHHHHHHHHHHHHHHH--CCCEEEE-CHHHHHHC--------------------------CCCCC
T ss_conf 769899999527-985899999999999997--8998998-34787652--------------------------99865
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 88653011101234567456999999998639988999488257899999999998518996288522223477222114
Q gi|254780227|r 107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ 186 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~ 186 (426)
.. .++. .+ ..+.|-+|++|||||+-.|.++.. .+++|++||=. =
T Consensus 53 ~~----------------~~~~----~~-~~~~Dlvi~lGGDGT~L~aar~~~-----~~~~PilGIN~----------G 96 (292)
T PRK03378 53 KT----------------GTLA----EI-GQQADLAVVVGGDGNMLGAARTLA-----RYDIKVIGINR----------G 96 (292)
T ss_pred CC----------------CCHH----HH-CCCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEEC----------C
T ss_conf 54----------------7866----85-305689999777889999999854-----36996898837----------9
Q ss_pred CCCHHHHH--HHHHHHHHHHHHHHHHCCCCEEE-EEEC
Q ss_conf 63356599--99999999999877516661699-9976
Q gi|254780227|r 187 SLGALTAA--QVSACFFDNISNERSATPRSLII-HEVM 221 (426)
Q Consensus 187 tiGfdTA~--~~~a~~i~~l~~~A~s~~~~~~i-VEvM 221 (426)
++||-|.+ +...+.++++..---...+|..+ +++.
T Consensus 97 ~lGFLt~~~~~~~~~~l~~i~~g~~~~~~R~~L~~~v~ 134 (292)
T PRK03378 97 NLGFLTDLDPDNAQQQLADVLEGHYISEKRFLLEAQVC 134 (292)
T ss_pred CCEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEE
T ss_conf 83688867878999999999838957711325899997
No 34
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.87 E-value=0.24 Score=28.12 Aligned_cols=80 Identities=14% Similarity=0.146 Sum_probs=45.0
Q ss_pred HHHHHHHHHHC---------CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH--H
Q ss_conf 99999999863---------998899948825789999999999851899628852222347722211463356599--9
Q gi|254780227|r 127 LEVSAHHLMQS---------GVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA--Q 195 (426)
Q Consensus 127 ~~~~~~~l~~~---------~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~--~ 195 (426)
.+.+.+.++++ +-|.+++||||||+-.|.+.... ....+++||... =++||-|.+ +
T Consensus 19 ~~~~~~~~~~~g~~~vdd~~~aDliI~iGGDGT~L~a~r~~~~----~~~~~~lGin~~---------G~lGFL~~~~~~ 85 (264)
T PRK03501 19 VKPLKKIAEENGFTVVDDPKNANIIVSIGGDGTFLQAVRKTGF----REDCLYAGISTK---------DQISFYCDFHID 85 (264)
T ss_pred HHHHHHHHHHCCCEEECCCCCCCEEEEECCHHHHHHHHHHHHC----CCCCEEEEEECC---------CCCEECCCCCHH
T ss_conf 9999999998798884898898999999971999999998734----489819999769---------844664678878
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9999999999877516661699997
Q gi|254780227|r 196 VSACFFDNISNERSATPRSLIIHEV 220 (426)
Q Consensus 196 ~~a~~i~~l~~~A~s~~~~~~iVEv 220 (426)
..-++++++...--... +..++|+
T Consensus 86 ~~~~~l~~i~~g~~~~~-~~~ll~~ 109 (264)
T PRK03501 86 HVDKMIQAATKEEIEVR-KYPTIEV 109 (264)
T ss_pred HHHHHHHHHHCCCCEEE-EEEEEEE
T ss_conf 99999999976996699-9867999
No 35
>PRK04759 consensus
Probab=93.83 E-value=0.09 Score=30.90 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=69.7
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 63379998368775148999999999999856997899983836601079913046269888874640787400336788
Q gi|254780227|r 28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK 107 (426)
Q Consensus 28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~ 107 (426)
.-|+|||+.-= ..|-.=...+.+++.+.. .+.+||- .......+.+ .+ ..+..
T Consensus 4 ~f~~I~Iv~k~-~~~~~~~~~~~l~~~L~~--~g~~v~v-d~~~~~~l~~------------------~~-----~~~~~ 56 (294)
T PRK04759 4 PFNVIAIIGKP-RDQQAIQTHKELYHWLTS--LGYTVFI-DDRLAAILTD------------------VP-----QEHFA 56 (294)
T ss_pred CCCEEEEEEEC-CCHHHHHHHHHHHHHHHH--CCCEEEE-CHHHHHHCCC------------------CC-----CCCCC
T ss_conf 99799999417-997999999999999986--8999999-1688655334------------------77-----22237
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 86530111012345674569999999986399889994882578999999999985189962885222234772221146
Q gi|254780227|r 108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t 187 (426)
+.. .+ ..+.|-++++|||||+-.+.++.. .+++||+||= -=+
T Consensus 57 ------------------~~~----~l-~~~~Dlvi~lGGDGTlL~aar~~~-----~~~~PilgiN----------~G~ 98 (294)
T PRK04759 57 ------------------SLV----EL-GKKADLAIVVGGDGNMLGAARVLS-----RFDISVIGVN----------RGN 98 (294)
T ss_pred ------------------CHH----HC-CCCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEE----------CCC
T ss_conf ------------------755----63-766568999847858999999860-----1699689884----------586
Q ss_pred CCHHHHH--HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 3356599--99999999999877516661699
Q gi|254780227|r 188 LGALTAA--QVSACFFDNISNERSATPRSLII 217 (426)
Q Consensus 188 iGfdTA~--~~~a~~i~~l~~~A~s~~~~~~i 217 (426)
+||-|.+ +.+.+.++++..-.-...+|..+
T Consensus 99 lGFLt~~~~~~~~~~l~~il~g~~~~~~R~~L 130 (294)
T PRK04759 99 LGFLTDLNPEDFQERLQAVLDGEYIEEERFLL 130 (294)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 46741468889999999997599579663148
No 36
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.80 E-value=0.17 Score=29.16 Aligned_cols=113 Identities=15% Similarity=0.202 Sum_probs=64.4
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 63379998368775148999999999999856997899983836601079913046269888874640787400336788
Q gi|254780227|r 28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK 107 (426)
Q Consensus 28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~ 107 (426)
.-|||||+.-=+ .|..-...+.+.+.+.. .+.+|+--..-.. . .++.-+....
T Consensus 3 ~~k~vgIv~k~~-~~~a~~~~~~l~~~L~~--~gi~v~ld~~~a~-~---------------------~~~~~~~~~~-- 55 (296)
T PRK01231 3 QFRNIGLIGRLG-SSQVVETLRRLKRFLLD--RHLHVILEEETAE-V---------------------LPGHGLQTVS-- 55 (296)
T ss_pred CCCEEEEEEECC-CHHHHHHHHHHHHHHHH--CCCEEEEEHHHHH-H---------------------CCCCCCCCCC--
T ss_conf 998999998489-87999999999999987--8899999324776-6---------------------5878866245--
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 86530111012345674569999999986399889994882578999999999985189962885222234772221146
Q gi|254780227|r 108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t 187 (426)
.+ ......|-++++|||||+-.+.+... ..++||+||=. =+
T Consensus 56 -------------------~~-----~~~~~~Dlii~lGGDGT~L~~~~~~~-----~~~~PilGiN~----------G~ 96 (296)
T PRK01231 56 -------------------RK-----LLGEVCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR----------GR 96 (296)
T ss_pred -------------------HH-----HCCCCEEEEEEECCCCHHHHHHHHHC-----CCCCCEEEEEC----------CC
T ss_conf -------------------33-----41653049999578728999999960-----36997898855----------87
Q ss_pred CCHHHHHH--HHHHHHHHHHH
Q ss_conf 33565999--99999999998
Q gi|254780227|r 188 LGALTAAQ--VSACFFDNISN 206 (426)
Q Consensus 188 iGfdTA~~--~~a~~i~~l~~ 206 (426)
+||-|.++ ...+.++++..
T Consensus 97 lGFL~~~~~~~~~~~l~~i~~ 117 (296)
T PRK01231 97 LGFLTDIRPDELEFKLAEVLD 117 (296)
T ss_pred CEEECCCCHHHHHHHHHHHHH
T ss_conf 006345688999999999981
No 37
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=93.79 E-value=0.11 Score=30.24 Aligned_cols=52 Identities=19% Similarity=0.411 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 4569999999986399889994882578999999999985189962885222234772
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi 181 (426)
-++.-.+++.+.+.+.|-++..|||||.+..+.-. +.++||+|||.-.-|=.
T Consensus 86 a~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av------~~~vPvLGipaGvk~~S 137 (355)
T COG3199 86 AEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV------GADVPVLGIPAGVKNYS 137 (355)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHC------CCCCCEEEECCCCCEEC
T ss_conf 79999999999865961999957885299998532------67886674135650203
No 38
>PRK00861 putative lipid kinase; Reviewed
Probab=93.65 E-value=0.19 Score=28.84 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 69999999986399889994882578999999999985189962885222234772221146335659999999999999
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS 205 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~ 205 (426)
+-..+++...+.+.|.++++|||||+.-+..- +. +.++++--||.==-||+. .++|.......+++.|.+
T Consensus 45 ~a~~la~~a~~~~~d~vv~~GGDGTv~ev~~g---l~--~~~~~lgiiP~GTgNdfA---r~lgip~~~~~a~~~i~~-- 114 (296)
T PRK00861 45 GADALAQEAVERGAELIIASGGDGTISAVAGA---LI--GTDIPLGIIPRGTANAFA---VALGIPDTLEQACETILQ-- 114 (296)
T ss_pred CHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH---HC--CCCCCEEEEECCCHHHHH---HHCCCCCCHHHHHHHHHC--
T ss_conf 69999999986799899998881899999975---33--589616998076657999---983999899999999852--
Q ss_pred HHHHHCCCCEEEEEECCCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8775166616999976987------4289999874014332310111111100014576523287865598999999999
Q gi|254780227|r 206 NERSATPRSLIIHEVMGRN------CGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSK 279 (426)
Q Consensus 206 ~~A~s~~~~~~iVEvMGR~------aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~ 279 (426)
...+++-+..+=||. .|+.|..+..+.. ..+...+ .+--+...++.
T Consensus 115 ----g~~~~iDlg~~n~~~f~~~ag~G~da~v~~~~~~-----------~~k~~~G-------------~~aY~~~~l~~ 166 (296)
T PRK00861 115 ----GKTRRVDVAYCNGQPMILLAGIGFEAETVEEADR-----------EAKNRFG-------------ILAYILSGLQQ 166 (296)
T ss_pred ----CCEEEEEEEEECCEEEEEEECCCCCHHHHHHHHH-----------HHHCCCC-------------HHHHHHHHHHH
T ss_conf ----9869988999999999999530500799987657-----------7510665-------------69999999999
Q ss_pred HHHCCCCEEEEEECCCC
Q ss_conf 85028953899504211
Q gi|254780227|r 280 VMEKKGSVAIFVSEGAC 296 (426)
Q Consensus 280 ~~~~~~~~vIVvsEG~~ 296 (426)
..+.+.+-+.+..+|..
T Consensus 167 l~~~~~~~~~i~~d~~~ 183 (296)
T PRK00861 167 LQELEPFEVEIETEDQI 183 (296)
T ss_pred HHHCCCEEEEEEECCEE
T ss_conf 86079749999999999
No 39
>PRK13057 putative lipid kinase; Reviewed
Probab=93.63 E-value=0.5 Score=26.10 Aligned_cols=86 Identities=23% Similarity=0.247 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 45699999999863998899948825789999999999851899628852222347722211463356599999999999
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDN 203 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~ 203 (426)
..+...+++.+ ..+.|.+++.|||||...+..-. . +.++++--||.=-=||+. .++|...-...+++.
T Consensus 37 ~g~a~~~~~~~-~~~~d~vv~~GGDGTv~ev~~gl---~--~~~~~lgiiP~GTgNdfA---r~lgip~d~~~a~~~--- 104 (287)
T PRK13057 37 PADLSEVIEAH-ADGVDLVIVGGGDGTLNAAAPAL---V--ETGLPLGILPLGTANDLA---RTLGIPLDLEAAARV--- 104 (287)
T ss_pred HHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHH---C--CCCCCEEEECCCCHHHHH---HHCCCCCCHHHHHHH---
T ss_conf 78999999998-66999899988589999999986---0--579836997388646789---983999899999999---
Q ss_pred HHHHHHHCCCCEEEEEECCCC
Q ss_conf 998775166616999976987
Q gi|254780227|r 204 ISNERSATPRSLIIHEVMGRN 224 (426)
Q Consensus 204 l~~~A~s~~~~~~iVEvMGR~ 224 (426)
+. ....+++-+-++-||.
T Consensus 105 i~---~g~~~~iDlg~vn~~~ 122 (287)
T PRK13057 105 IA---RGKVRRIDLGWVNGHY 122 (287)
T ss_pred HH---CCCEEEEEEEEECCEE
T ss_conf 86---5984999688888989
No 40
>TIGR00147 TIGR00147 conserved hypothetical protein TIGR00147; InterPro: IPR005218 Although the proteins in this group all contain the diacylglycerol kinase catalytic domain, their function is, as yet, unknown..
Probab=93.50 E-value=0.43 Score=26.52 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHHHHHHH
Q ss_conf 26988887464078740033678886530111012345674569999999986399889994882578999-99999998
Q gi|254780227|r 84 EDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTA-CDLLRYLK 162 (426)
Q Consensus 84 ~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a-~~L~e~~~ 162 (426)
+..|..+-..+..-+....+.-+.-. -..++.-+.++...+++++.+|++|||||+.-. +.|.+ ++
T Consensus 20 ~~~L~~v~~~L~~~~~e~~~~~T~~~------------Ghaed~A~~~~~~~~~~~~~vi~~GGDGTi~ev~naL~~-~d 86 (316)
T TIGR00147 20 EKALKEVVKKLEKEGVEVRVKLTKKK------------GHAEDAARAVKEAAEYKVDTVIALGGDGTIHEVVNALKD-LD 86 (316)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC------------CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH-HC
T ss_conf 67799999999857775999851678------------846689999999874466689996189848999888875-12
Q ss_pred HCCCCCEEEE-ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHH
Q ss_conf 5189962885-22223477222114633565999999999999987751666169999769874-2899
Q gi|254780227|r 163 EKNYNITVVG-LPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNC-GWLT 229 (426)
Q Consensus 163 ~~~~~i~vig-iPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~a-G~LA 229 (426)
. .+||-+| +|.==.||.. .++|=. -+...++++.+.. ...+.+.+-+|=+|+| +-+-
T Consensus 87 ~--~diP~lg~~P~Gt~NDFs---r~lgIp--~~~L~ka~~~~~~---G~~~~~d~gqvN~~~~ksqil 145 (316)
T TIGR00147 87 D--KDIPALGILPVGTANDFS---RALGIP--KEDLIKAAKKVIA---GKARAIDLGQVNKQYDKSQIL 145 (316)
T ss_pred C--CCCCEEEEECCCCCCCHH---HHCCCC--HHHHHHHHHHHHC---CCCCEEEEECCCCCCHHHHHH
T ss_conf 5--778824543576555033---313875--8999999999838---897346642226720046787
No 41
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.46 E-value=0.12 Score=30.04 Aligned_cols=128 Identities=14% Similarity=0.196 Sum_probs=72.3
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCCCCC
Q ss_conf 63379998368775148999999999999856997899983836601079913046269888874640787-40033678
Q gi|254780227|r 28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGNSRV 106 (426)
Q Consensus 28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~LgtsR~ 106 (426)
.-|+|||+.-=+ .|..-.+.+.+.+.+.. ++.+||--......+ .. .. ....| .++. +
T Consensus 4 ~fk~Igiv~k~~-~~~~~~~~~~l~~~L~~--~g~~v~ld~~~~~~~--------~~------~~-~~~~~~~~~~--~- 62 (296)
T PRK04539 4 PFHNIGIVTRPN-TPDIQDTAHTLITFLKQ--HGFTVYLDEVGVKEG--------CI------YT-QDTVGCHIVN--K- 62 (296)
T ss_pred CCCEEEEEEECC-CHHHHHHHHHHHHHHHH--CCCEEEEECCHHHHC--------CC------CC-CCCCCCCCCC--H-
T ss_conf 997899997089-87999999999999997--879999965411203--------54------64-3345655468--6-
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 88653011101234567456999999998639988999488257899999999998518996288522223477222114
Q gi|254780227|r 107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ 186 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~ 186 (426)
. .+ ....|-++++|||||+-.|.++.. .+++||+||=. =
T Consensus 63 -----~--------------------~~-~~~~Dlii~lGGDGTlL~a~r~~~-----~~~~PilGiN~----------G 101 (296)
T PRK04539 63 -----T--------------------EL-GQYCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ----------G 101 (296)
T ss_pred -----H--------------------HH-CCCCCEEEEECCCHHHHHHHHHHH-----HCCCCEEEEEC----------C
T ss_conf -----7--------------------81-646779999787089999999860-----05997899844----------7
Q ss_pred CCCHHHHH--HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 63356599--99999999999877516661699
Q gi|254780227|r 187 SLGALTAA--QVSACFFDNISNERSATPRSLII 217 (426)
Q Consensus 187 tiGfdTA~--~~~a~~i~~l~~~A~s~~~~~~i 217 (426)
++||-|.+ +...+.++++..---....|..+
T Consensus 102 ~lGFLt~~~~~~~~~~l~~il~g~~~~~~R~~l 134 (296)
T PRK04539 102 HLGFLTQIPREYMTDKLLPVLEGKYLAEERILI 134 (296)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 544525668799999999997589636243007
No 42
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.30 E-value=0.13 Score=29.76 Aligned_cols=52 Identities=23% Similarity=0.421 Sum_probs=36.7
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH--HHHHHHHH
Q ss_conf 39988999488257899999999998518996288522223477222114633565999--99999999
Q gi|254780227|r 137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQ--VSACFFDN 203 (426)
Q Consensus 137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~--~~a~~i~~ 203 (426)
.+.|-+++||||||+-.+.+... ..++||+||-. =++||-|.++ ..-+.+++
T Consensus 41 ~~~Dlii~iGGDGT~L~a~r~~~-----~~~iPilGiN~----------G~lGFL~~~~~~~~~~~l~~ 94 (272)
T PRK02231 41 QRAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR----------GNLGFLTDIDPKNAYSQLEA 94 (272)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-----CCCCCEEEECC----------CCCEEEECCCHHHHHHHHHH
T ss_conf 17789999787589999999860-----05997896537----------88627422585889999999
No 43
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.16 E-value=0.13 Score=29.83 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=70.1
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 87633799983687751489999999999998569978999838366010799130462698888746407874003367
Q gi|254780227|r 26 DMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSR 105 (426)
Q Consensus 26 ~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR 105 (426)
+++.|||+|+.==+. |..-...+.+.+.+.. .+.+|+-...-..-+.... ..++...
T Consensus 1 m~~~R~V~IV~k~~~-~~a~~~a~~l~~~L~~--~g~~v~v~~~~~~~~~~~~--------------------~~~~~~~ 57 (303)
T PRK03372 1 MTAERTVLLVAHTGR-DEATESARRVVKQLGD--AGIGVRVLAAEAADLPDDM--------------------RALGVEI 57 (303)
T ss_pred CCCCCEEEEEECCCC-HHHHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCC--------------------CCCCCCC
T ss_conf 998888999970899-8999999999999997--8898999704010024445--------------------5556542
Q ss_pred CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 88865301110123456745699999999863998899948825789999999999851899628852222347722211
Q gi|254780227|r 106 VKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH 185 (426)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td 185 (426)
..... +.....++|-++++|||||+-.+.++.. ..++||+||=-
T Consensus 58 ~~~~~---------------------~~~~~~~~Dlvi~lGGDGT~L~aar~~~-----~~~iPilGiN~---------- 101 (303)
T PRK03372 58 EVVDA---------------------DPDAADGCELVLVLGGDGTFLRAAELAR-----NADVPVLGVNL---------- 101 (303)
T ss_pred CCCCC---------------------CCCCCCCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEEC----------
T ss_conf 23453---------------------2233578558999778789999999844-----47998898725----------
Q ss_pred CCCCHHHHHH--HHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4633565999--9999999999877516661699
Q gi|254780227|r 186 QSLGALTAAQ--VSACFFDNISNERSATPRSLII 217 (426)
Q Consensus 186 ~tiGfdTA~~--~~a~~i~~l~~~A~s~~~~~~i 217 (426)
=++||-|.+. .+.++++++...--.-.+|..+
T Consensus 102 G~lGFLt~~~~~~~~~~l~~i~~g~~~ie~R~~l 135 (303)
T PRK03372 102 GHVGFLAEAEREDLDEAVERVVDRDYRVEERMTL 135 (303)
T ss_pred CCCEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 9821312469889999999998089758762047
No 44
>pfam00465 Fe-ADH Iron-containing alcohol dehydrogenase.
Probab=92.58 E-value=0.45 Score=26.37 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH-------------CCCCCEEEEECCCCCCC
Q ss_conf 4569999999986399889994882578999999999985-------------18996288522223477
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKE-------------KNYNITVVGLPKTIDND 180 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~-------------~~~~i~vigiPKTIDND 180 (426)
.++++++++.+++++.|.+|.|||.-++..|..++-.... ....+|+|.||-|--.+
T Consensus 65 ~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTG 134 (312)
T pfam00465 65 LEEVDEAAAAAREEGADVIIAVGGGSVIDTAKAIALLLTNPGDVWDYLGGKKLTKPALPLIAIPTTAGTG 134 (312)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCC
T ss_conf 9999999999996499899980897612499999999719998899855765556789889971786677
No 45
>PRK11914 diacylglycerol kinase; Reviewed
Probab=92.30 E-value=0.46 Score=26.33 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 56999999998639988999488257899999999998518996288522223477222114633565
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALT 192 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdT 192 (426)
.+...+++...+.+.|.++++|||||...+..- +. +.++++--||.===||+. .++|..+
T Consensus 49 ~~a~~la~~a~~~g~d~vv~~GGDGTv~ev~~~---l~--~~~~plgiiP~GTgNdfA---r~lgip~ 108 (304)
T PRK11914 49 HHARHLVAAALAKGTDALVVVGGDGVISNALQV---LA--GTDIPLGIIPAGTGNDHA---REFGIPT 108 (304)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH---HC--CCCCEEEEECCCCHHHHH---HHCCCCC
T ss_conf 899999998886499699999562598898764---13--578608996388726889---9729998
No 46
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=92.04 E-value=0.78 Score=24.84 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH---------------HCCCCCEEEEECCCC
Q ss_conf 456999999998639988999488257899999999998---------------518996288522223
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLK---------------EKNYNITVVGLPKTI 177 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~---------------~~~~~i~vigiPKTI 177 (426)
.+..+++++.+++.+.|.+|.+||--++.+|..++-... ..+..+|+|.||-|=
T Consensus 72 ~~~V~~~~~~~r~~~~D~IiavGGGSviD~AKaia~~~~~~~~~~~~~~~g~~~~~~~~lP~iaIPTTa 140 (381)
T PRK10624 72 ISVVKEGLEVFQASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLAPTKKPSVPIIAIPTTA 140 (381)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCEEEEECCC
T ss_conf 999999999998649998998089408889999999970985114787526565557888889974897
No 47
>PRK13059 putative lipid kinase; Reviewed
Probab=91.96 E-value=0.56 Score=25.75 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 69999999986399889994882578999999999985189962885222234772221146335659999999999999
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS 205 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~ 205 (426)
+.+.+.+.+ +.+.|.++++|||||..-+..- +...+.++++--+|.=--||+. .++|...-.. ++++.+.
T Consensus 45 ~~~~a~~~~-~~~~d~vv~~GGDGTinevvng---l~~~~~~~~lgiiP~GTgNdfA---r~Lgip~~~~---~a~~~i~ 114 (294)
T PRK13059 45 DLKEAFKDI-DESYKYILIAGGDGTVDNVVNA---MKKLNIDIPIGILPVGTANDFA---KFIGMPTNVG---EACEQIL 114 (294)
T ss_pred HHHHHHHHH-HCCCCEEEEEECCCHHHHHHHH---HHHCCCCCCEEEEECCCCCHHH---HHCCCCCCHH---HHHHHHH
T ss_conf 899999988-7489889999567889999999---9856999857998267750789---9829999999---9999884
Q ss_pred HHHHHCCCCEEEEEECCCC
Q ss_conf 8775166616999976987
Q gi|254780227|r 206 NERSATPRSLIIHEVMGRN 224 (426)
Q Consensus 206 ~~A~s~~~~~~iVEvMGR~ 224 (426)
. ...+.+-+-++=+|+
T Consensus 115 ~---g~~~~iDlg~vn~r~ 130 (294)
T PRK13059 115 K---SKPVKVDLGKVNDKY 130 (294)
T ss_pred C---CCEEEEEEEEECCEE
T ss_conf 3---966999887899989
No 48
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.59 E-value=0.28 Score=27.66 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=35.2
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH--HHHHHHHHHHHHH
Q ss_conf 3998899948825789999999999851899628852222347722211463356599--9999999999987
Q gi|254780227|r 137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA--QVSACFFDNISNE 207 (426)
Q Consensus 137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~--~~~a~~i~~l~~~ 207 (426)
.+-|.+++||||||+--+.+. ...||+||-- =++||-|.+ +.+-++++++...
T Consensus 51 ~~~Dlvi~iGGDGTlLr~~~~--------~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~~~~g 105 (272)
T PRK01185 51 ISADIIIVIGGDGTVLRTLQF--------AKGPVLGINM----------GGLGFLTEIEIDEVGSSILKLIRG 105 (272)
T ss_pred CCCCEEEEECCCHHHHHHHHH--------CCCCEEEECC----------CCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 898899997783999999987--------7999999817----------854368848868999999999818
No 49
>PRK10586 hypothetical protein; Provisional
Probab=89.97 E-value=1.3 Score=23.47 Aligned_cols=58 Identities=19% Similarity=0.140 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 4569999999986399889994882578999999999985189962885222234772221146
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS 187 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t 187 (426)
+++++++.+.... +.|.+|-+||--++++|..++.+ .++|+|-||-.-.||=|.|-.|
T Consensus 73 ~~ei~rl~~~~~~-~~d~IigvGGGK~iDtaK~vA~~-----~~~pvv~vPTiAStcAp~S~ls 130 (362)
T PRK10586 73 ESDVAQLAAESGD-DRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTPLS 130 (362)
T ss_pred HHHHHHHHHHHCC-CCCEEEEECCCHHHHHHHHHHHH-----CCCCEEEEECHHCCCCCCCCEE
T ss_conf 9999999997355-88789995571999999999998-----1999899605110576666137
No 50
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=89.73 E-value=1.5 Score=22.94 Aligned_cols=53 Identities=9% Similarity=0.190 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH-------------CCCCCEEEEECCC
Q ss_conf 4569999999986399889994882578999999999985-------------1899628852222
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKE-------------KNYNITVVGLPKT 176 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~-------------~~~~i~vigiPKT 176 (426)
.+..+..++-+++.+.|.+|.+||--++..|..++-.... ....+|+|.||-|
T Consensus 74 ~~~v~~~~~~~r~~~~D~ivavGGGS~iD~AKaia~~~~~~~~~~d~~g~~~~~~~~lP~iaIPTT 139 (383)
T PRK09860 74 TENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTT 139 (383)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEECCC
T ss_conf 999999999998739999999389622678999999980899889973667556888988987399
No 51
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=89.44 E-value=1.6 Score=22.80 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH-------------CCCCCEEEEECCCC
Q ss_conf 4569999999986399889994882578999999999985-------------18996288522223
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKE-------------KNYNITVVGLPKTI 177 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~-------------~~~~i~vigiPKTI 177 (426)
.+..+..++.+++.+.|.+|.+||--++..|..++-.... .....++|.||-|=
T Consensus 72 ~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTa 138 (377)
T COG1454 72 IETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTA 138 (377)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEEEECCCC
T ss_conf 8899999999981699989997793087899999999608740666405566667899879826998
No 52
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.40 E-value=1.6 Score=22.78 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=44.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999863998899948825789999999999851899628852222347722211463356599999999999998
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN 206 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~ 206 (426)
.++.++.+.++++|++|+.++..+......+.+ .++|+|.+=...++. .. .+++.|-. .-..++++.+..
T Consensus 43 ~e~~l~~l~~~~vDGiIi~~~~~~~~~~~~~~~------~~iPvV~i~~~~~~~--~~-~~V~~Dn~-~~~~~a~~~L~~ 112 (266)
T cd06278 43 LDAALRQLLQYRVDGVIVTSGTLSSELAEECRR------NGIPVVLINRYVDGP--GV-DAVCSDNY-EAGRLAAELLLA 112 (266)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEECCCCCCC--CC-CEEEECHH-HHHHHHHHHHHH
T ss_conf 999999999559999999489899999999997------699899978768999--99-89997789-999999999998
Q ss_pred HHHHCCCCEEEEE
Q ss_conf 7751666169999
Q gi|254780227|r 207 ERSATPRSLIIHE 219 (426)
Q Consensus 207 ~A~s~~~~~~iVE 219 (426)
.. |+++.++-
T Consensus 113 --~G-h~~I~~i~ 122 (266)
T cd06278 113 --KG-CRRIAFIG 122 (266)
T ss_pred --CC-CCEEEEEE
T ss_conf --09-98899996
No 53
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=89.39 E-value=1.6 Score=22.78 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6999999998639988999488257899999999998518996288522223477-222114633565999999999999
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND-IIPIHQSLGALTAAQVSACFFDNI 204 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND-i~~td~tiGfdTA~~~~a~~i~~l 204 (426)
.....++.+.++++|++|+.+...+-.....+.+ .++|+|.+=...+++ ++ ++..|- ..-..++++.+
T Consensus 43 ~e~~~l~~l~~~~vDGiIi~~~~~~~~~~~~l~~------~~iPvV~id~~~~~~~~~----~V~~d~-~~~~~~a~~~L 111 (265)
T cd06299 43 TENRYLDNLLSQRVDGIIVVPHEQSAEQLEDLLK------RGIPVVFVDREITGSPIP----FVTSDP-QPGMTEAVSLL 111 (265)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH------CCCCEEEECCCCCCCCCC----EEEECH-HHHHHHHHHHH
T ss_conf 9999999999479999999806799899999996------699899837868999886----899676-99999999999
Q ss_pred HHHHHHCCCCEEEEE
Q ss_conf 987751666169999
Q gi|254780227|r 205 SNERSATPRSLIIHE 219 (426)
Q Consensus 205 ~~~A~s~~~~~~iVE 219 (426)
. + .. |+++.++-
T Consensus 112 ~-~-~G-~~~i~~i~ 123 (265)
T cd06299 112 V-A-LG-HKKIGYIS 123 (265)
T ss_pred H-H-CC-CCEEEEEC
T ss_conf 9-7-49-98388604
No 54
>pfam01761 DHQ_synthase 3-dehydroquinate synthase. The 3-dehydroquinate synthase EC:4.6.1.3 domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide. 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.
Probab=89.13 E-value=0.57 Score=25.72 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 74569999999986399---88999488257899999999998518996288522223477222114633565999
Q gi|254780227|r 123 DENPLEVSAHHLMQSGV---TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQ 195 (426)
Q Consensus 123 ~~~~~~~~~~~l~~~~I---d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~ 195 (426)
+.+.++++.+.+.+.++ |.++.+||.-....|...+... .-+++++.||-|..+. +|-++|.-++++
T Consensus 62 ~~~~~~~i~~~l~~~~~~r~d~iiaiGGG~v~D~ak~~A~~~---~rg~~~i~iPTt~~a~---~da~~g~k~~i~ 131 (310)
T pfam01761 62 TLETVARIYDALLEKGLTRSDVIIALGGGVIGDLAGFAAATY---MRGIPFIQVPTTLLAQ---VDSSIGGKTAIN 131 (310)
T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHH---HCCCCEEEECCHHHHH---HCCCCCCCEEEE
T ss_conf 999999999999974999775499954962116899999999---7699779867088874---365553487997
No 55
>PRK13054 lipid kinase; Reviewed
Probab=88.72 E-value=1.4 Score=23.24 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 56999999998639988999488257899999-99999851899628852222347722211463356599999999999
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACD-LLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDN 203 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~-L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~ 203 (426)
.+-.+.++...+.+.|.+|++|||||..-+.. |... ......++--||.===||+. .++|...-... +++.
T Consensus 43 gda~~la~~a~~~g~d~vv~~GGDGTv~evvngl~~~--~~~~~~~LgiiP~GTgNdfA---R~lgip~d~~~---a~~~ 114 (299)
T PRK13054 43 GDAARYVEEALALGVATVIAGGGDGTLNEVATALAQL--EGDDRPSLGILPLGTANDFA---TAAGIPLEPDK---ALKL 114 (299)
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHC--CCCCCCEEEEECCCCHHHHH---HHCCCCCCHHH---HHHH
T ss_conf 4599999999877998999987722999999999747--88778639996387568999---98299989999---9977
Q ss_pred HHHHHHHCCCCEEEEEECCC
Q ss_conf 99877516661699997698
Q gi|254780227|r 204 ISNERSATPRSLIIHEVMGR 223 (426)
Q Consensus 204 l~~~A~s~~~~~~iVEvMGR 223 (426)
+.. ...+++-+.++=||
T Consensus 115 i~~---g~~~~iDlg~vn~~ 131 (299)
T PRK13054 115 AIE---GNAQPIDLARVNDQ 131 (299)
T ss_pred HHC---CCEEEEEEEEECCE
T ss_conf 846---98799859999998
No 56
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=88.43 E-value=1.8 Score=22.42 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 745699999999863998899948825789999999999851899628852222347722
Q gi|254780227|r 123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII 182 (426)
Q Consensus 123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~ 182 (426)
..++.+++...+.+.+.|.++-|||--+.++|..++. ..++|+|.||-+=.+|=+
T Consensus 69 ~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~-----~~~~pfIsvPT~AS~Da~ 123 (360)
T COG0371 69 SEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAY-----RLGLPFISVPTIASTDAI 123 (360)
T ss_pred CHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHH-----HCCCCEEECCCCCCCCCC
T ss_conf 7779999998704479998999568189999999999-----819997980576444555
No 57
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=88.31 E-value=1.9 Score=22.30 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHH--CCCCEEEEECCHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 4569999999986--39988999488257899-99999999851899628852222347722211
Q gi|254780227|r 124 ENPLEVSAHHLMQ--SGVTILHTIGGDDTNTT-ACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH 185 (426)
Q Consensus 124 ~~~~~~~~~~l~~--~~Id~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td 185 (426)
++++.++++.+++ .+.|++||.=|-|||.- |..|+-.++ +.+.|||-.=.=.--|-+.+|
T Consensus 65 p~~w~~la~~I~~~~~~~dG~VVtHGTDTm~~TA~aLs~~l~--~l~kPVVlTGSqrp~~~~~sD 127 (335)
T PRK09461 65 PEDWQHIADDIKANYDDYDGFVILHGTDTMAYTASALSFMLE--NLGKPVIVTGSQIPLAELRSD 127 (335)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH--CCCCCEEEECCCCCCCCCCCC
T ss_conf 999999999999887259869995374409999999999971--899877984365677666764
No 58
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=88.26 E-value=1.9 Score=22.28 Aligned_cols=78 Identities=12% Similarity=0.017 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 69999999986399889994882578999999999985189962885222234772221146335659999999999999
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS 205 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~ 205 (426)
.-...++.|.++++|++|+.+-+.+-.....|.+ .++|+|.+ |.+.++.+ |+.+|-. .....+++.+.
T Consensus 43 ~e~~~l~~l~~~~vDGiIl~~~~~~~~~~~~l~~------~~iPvV~i----~~~~~~~~-~V~~Dn~-~~~~~a~~~L~ 110 (259)
T cd01542 43 KEIEALELLARQKVDGIILLATTITDEHREAIKK------LNVPVVVV----GQDYPGIS-SVVYDDY-GAGYELGEYLA 110 (259)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEE----CCCCCCCC-EEEECHH-HHHHHHHHHHH
T ss_conf 9999999999569998999377777599999996------69999995----98689998-8998679-99999999999
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 8775166616999
Q gi|254780227|r 206 NERSATPRSLIIH 218 (426)
Q Consensus 206 ~~A~s~~~~~~iV 218 (426)
. .. |+++.++
T Consensus 111 ~--~G-hr~I~~i 120 (259)
T cd01542 111 Q--QG-HKNIAYL 120 (259)
T ss_pred H--HC-CCEEEEE
T ss_conf 8--28-9859999
No 59
>PRK13055 putative lipid kinase; Reviewed
Probab=88.18 E-value=1.9 Score=22.41 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 6999999998639988999488257899999-99999851899628852222347722211463356
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACD-LLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGAL 191 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~-L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfd 191 (426)
+-..+.+...+.+.|.++++|||||..-+.. |+ ......++--||.===||+. .++|..
T Consensus 47 ~a~~~a~~a~~~g~d~Iva~GGDGTinevvngl~----~~~~~~~LgiIP~GTgNDfA---r~Lgip 106 (334)
T PRK13055 47 SAKNEARRAAKAGFDLIIAAGGDGTINEVVNGIA----PLEKRPKMAIIPAGTTNDYA---RALKIP 106 (334)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH----CCCCCCEEEEEECCCCHHHH---HHCCCC
T ss_conf 7999999876579989999877608999999873----46999718998077707899---982999
No 60
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=87.99 E-value=2 Score=22.18 Aligned_cols=81 Identities=10% Similarity=0.044 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 56999999998639988999488257899999999998518996288522223477222114633565999999999999
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNI 204 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l 204 (426)
+.....+++|.++++|++|+++...+......+. ..++|+|.+=.+.+..++ ++++|..- ....+++.+
T Consensus 43 ~~~~~~i~~l~~~~vdGiI~~~~~~~~~~~~~~~------~~~iPvV~i~~~~~~~~~----~V~~Dn~~-~~~~a~~~L 111 (264)
T cd01574 43 EALRAAVRRLLAQRVDGVIVNAPLDDADAALAAA------PADVPVVFVDGSPSPRVS----TVSVDQEG-GARLATEHL 111 (264)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH------HCCCCEEEECCCCCCCCC----EEEECHHH-HHHHHHHHH
T ss_conf 9999999999964999999916889969999998------589968998667999998----89978899-999999999
Q ss_pred HHHHHHCCCCEEEEE
Q ss_conf 987751666169999
Q gi|254780227|r 205 SNERSATPRSLIIHE 219 (426)
Q Consensus 205 ~~~A~s~~~~~~iVE 219 (426)
.. ..+ +++.++-
T Consensus 112 ~~--~G~-~~i~~i~ 123 (264)
T cd01574 112 LE--LGH-RTIAHVA 123 (264)
T ss_pred HH--CCC-CCEEECC
T ss_conf 98--499-8273258
No 61
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=87.57 E-value=0.82 Score=24.69 Aligned_cols=55 Identities=25% Similarity=0.352 Sum_probs=38.6
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 399889994882578999999999985189962885222234772221146335659999999999999877
Q gi|254780227|r 137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNER 208 (426)
Q Consensus 137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A 208 (426)
...|.++++||||++..+++... ..++||+||=- . ++||-|-.. .+.++.+....
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin~---------G-~lGFLt~~~--~~~~~~~~~~~ 108 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGINL---------G-HLGFLTDFE--PDELEKALDAL 108 (281)
T ss_pred CCCEEEEEECCCHHHHHHHHHHC-----CCCCCEEEEEC---------C-CCCCCCCCC--HHHHHHHHHHH
T ss_conf 77649999899689999999745-----56997899988---------9-830036768--78999999998
No 62
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=87.50 E-value=2.2 Score=21.99 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 45699999999863998899948825789999999999851899628852222347722
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII 182 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~ 182 (426)
.++.+++.+.++..+.|.++.+||.-....+...+. ..++|+|.||-+-.||=+
T Consensus 74 ~~~i~~l~~~~~~~~~d~vi~~GgG~~~D~~k~~a~-----~~~~p~i~vpT~as~da~ 127 (351)
T PRK00843 74 MEEVEKVEEKARDSGAGFLIGVGGGSSIDVAKLAST-----RLGIPFISVPTAASHDGI 127 (351)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH-----HCCCCEEEECCCCCCCCC
T ss_conf 999999999998459998999565168489999999-----829998995272103766
No 63
>pfam02569 Pantoate_ligase Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyses the formation of pantothenate from pantoate and alanine.
Probab=87.45 E-value=0.97 Score=24.23 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=9.0
Q ss_pred HHHHHHHHHCCCCEEEE
Q ss_conf 99999998639988999
Q gi|254780227|r 128 EVSAHHLMQSGVTILHT 144 (426)
Q Consensus 128 ~~~~~~l~~~~Id~Li~ 144 (426)
+.=++-|++.+.|.+++
T Consensus 76 ~~D~~ll~~~~vD~vF~ 92 (280)
T pfam02569 76 ERDLALLEKEGVDIVFA 92 (280)
T ss_pred HHHHHHHHHCCCCEEEC
T ss_conf 99999999869989977
No 64
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro: IPR010187 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity acting on X-H and Y-H to form an X-Y bond with a disulfide as acceptor, 0030700 glycine reductase complex.
Probab=86.85 E-value=0.2 Score=28.63 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=50.6
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC-CHH--HCCCCCCCEECC-CCCHHHHHHHH-HCCCCC
Q ss_conf 8763379998368775148999999999999856997899983-836--601079913046-26988887464-078740
Q gi|254780227|r 26 DMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYR-FGY--QGLLLDDKITIT-EDMRQNAEQLL-SYGGSP 100 (426)
Q Consensus 26 ~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~-~G~--~GL~~~~~~~l~-~l~~~~v~~~~-~~GGt~ 100 (426)
+|=+|.+=|+..+--|.||--.+.++.+.|.++-.|-++.--. +|| +|.-.+.+.+=. +-..+.|..+. .+-|-.
T Consensus 122 ~~fkK~~YV~~~~~~Aa~MR~~l~A~AK~A~K~~~GE~Ig~~~EeGy~~RG~R~~~f~ed~kp~s~R~V~ML~KKL~GEE 201 (433)
T TIGR01918 122 DMFKKDVYVMITGDSAAGMRKDLPALAKFANKLAKGEEIGSPDEEGYFERGVRVNAFREDRKPGSERAVDMLVKKLKGEE 201 (433)
T ss_pred CEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 15653588970774033565545889999988643565588654672226821012001376257899999874306862
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 03367888653011101234567456999999998639988999488
Q gi|254780227|r 101 IGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGG 147 (426)
Q Consensus 101 LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGG 147 (426)
+.|----|. .+.-...+.+.+|.|-.| +++.-||
T Consensus 202 F~TE~P~P~------------~D~V~~~~ai~d~sKA~I-A~VT~GG 235 (433)
T TIGR01918 202 FQTEYPMPV------------FDRVEPAAAIKDLSKAKI-AVVTSGG 235 (433)
T ss_pred EECCCCCCC------------CCCCCCCCCHHHHCCCEE-EEEECCC
T ss_conf 002688873------------362013630222023328-9984075
No 65
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=86.55 E-value=2.4 Score=21.67 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=24.5
Q ss_pred HHHHHCCCCEEEEEECCC-CCCHHHHHHHHHCCCCCCCH
Q ss_conf 877516661699997698-74289999874014332310
Q gi|254780227|r 206 NERSATPRSLIIHEVMGR-NCGWLTAYSAHCYLNMIQDR 243 (426)
Q Consensus 206 ~~A~s~~~~~~iVEvMGR-~aG~LAl~~ala~ga~~~~i 243 (426)
....+..+++.+|=|||- |.||++|...-...++.++.
T Consensus 14 ~~~r~~g~~Ig~VPTMGaLH~GHlsLI~~A~~~~d~vvV 52 (283)
T PRK00380 14 RALRREGKRIGFVPTMGNLHEGHLSLVREARAEADVVVV 52 (283)
T ss_pred HHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 999971993999858722758999999999974992999
No 66
>cd00560 PanC PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=85.74 E-value=2.5 Score=21.54 Aligned_cols=29 Identities=21% Similarity=0.091 Sum_probs=12.9
Q ss_pred CCCEEEEEECCC-CCCHHHHHHHHHCCCCC
Q ss_conf 661699997698-74289999874014332
Q gi|254780227|r 212 PRSLIIHEVMGR-NCGWLTAYSAHCYLNMI 240 (426)
Q Consensus 212 ~~~~~iVEvMGR-~aG~LAl~~ala~ga~~ 240 (426)
.+++.||=|||- |.||++|...-...++.
T Consensus 21 ~~~ig~VPTMGaLH~GHlsLi~~A~~~~d~ 50 (276)
T cd00560 21 GKSIGFVPTMGALHEGHLSLIKRAKKENDK 50 (276)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 990999738622658999999999985992
No 67
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=84.85 E-value=2.9 Score=21.13 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHH--HHHHHHHHHHH
Q ss_conf 6999999998639988999488257899999999998518996288522223477222114633565--99999999999
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALT--AAQVSACFFDN 203 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdT--A~~~~a~~i~~ 203 (426)
.-...++.|.++++|++|+.+-..+-.....+. + .++|+|.+-...+++-. .++++|- |.. .+++.
T Consensus 43 ~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~----~--~~iP~V~~~~~~~~~~~---~~V~~Dn~~~~~---~~~~~ 110 (268)
T cd06273 43 REYAQARKLLERGVDGLALIGLDHSPALLDLLA----R--RGVPYVATWNYSPDSPY---PCVGFDNREAGR---LAARH 110 (268)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH----H--CCCCEEEECCCCCCCCC---CEEEECHHHHHH---HHHHH
T ss_conf 999999999965999999918999989999999----7--59989998465788999---789967799999---99999
Q ss_pred HHHHHHHCCCCEEEEEEC--------CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 998775166616999976--------987428999987401433231011111110001457652328786559899999
Q gi|254780227|r 204 ISNERSATPRSLIIHEVM--------GRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIE 275 (426)
Q Consensus 204 l~~~A~s~~~~~~iVEvM--------GR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~ 275 (426)
+. + ..+ +++.++--- -|..||....... +-......+.+..++.+.-.+
T Consensus 111 L~-~-~G~-~~i~~i~~~~~~~~~~~~R~~gf~~al~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 167 (268)
T cd06273 111 LI-A-LGH-RRIAMIFGPTQGNDRARARRAGVRAALAEA--------------------GLELPELWQVEAPYSIADGRA 167 (268)
T ss_pred HH-H-CCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHH--------------------CCCCCHHHEEECCCCHHHHHH
T ss_conf 98-7-298-747999468777778999999999999980--------------------999871420315789899999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999850289
Q gi|254780227|r 276 RLSKVMEKKG 285 (426)
Q Consensus 276 ~i~~~~~~~~ 285 (426)
.+++.+....
T Consensus 168 ~~~~~l~~~~ 177 (268)
T cd06273 168 ALRQLLEQPP 177 (268)
T ss_pred HHHHHHHCCC
T ss_conf 9999984799
No 68
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=84.12 E-value=1.4 Score=23.23 Aligned_cols=49 Identities=20% Similarity=0.073 Sum_probs=33.5
Q ss_pred HHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 9863998899948825789999999999851899628852222347722
Q gi|254780227|r 134 LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII 182 (426)
Q Consensus 134 l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~ 182 (426)
.+..+-+.++++|||||..-+..--.........+++--||.=-=||+.
T Consensus 45 ~~~~~~~~vvv~GGDGTv~evlngl~~~~~~~~~~plgiIP~GTGNdfa 93 (124)
T smart00046 45 RDLPKFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred HCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHH
T ss_conf 5245356699953775199999999854355789878981686778999
No 69
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=83.82 E-value=3.2 Score=20.88 Aligned_cols=37 Identities=14% Similarity=0.022 Sum_probs=25.8
Q ss_pred HHHHCCCCEEEEEECCC-CCCHHHHHHHHHCCCCCCCH
Q ss_conf 77516661699997698-74289999874014332310
Q gi|254780227|r 207 ERSATPRSLIIHEVMGR-NCGWLTAYSAHCYLNMIQDR 243 (426)
Q Consensus 207 ~A~s~~~~~~iVEvMGR-~aG~LAl~~ala~ga~~~~i 243 (426)
..+.+.+++.||-+||- |.||++|.-.--..+|.++.
T Consensus 16 ~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVV 53 (285)
T COG0414 16 ALRKEGKRVGLVPTMGNLHEGHLSLVRRAKKENDVVVV 53 (285)
T ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 99971987999827742116799999998640993999
No 70
>pfam07355 GRDB Glycine/sarcosine/betaine reductase selenoprotein B (GRDB). This family represents a conserved region approximately 350 residues long within the selenoprotein B component of the bacterial glycine, sarcosine and betaine reductase complexes.
Probab=83.53 E-value=0.36 Score=26.99 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHH--H-HHHHHHHHHCCCCCEEEE
Q ss_conf 67456999999998639988999488257899--9-999999985189962885
Q gi|254780227|r 122 KDENPLEVSAHHLMQSGVTILHTIGGDDTNTT--A-CDLLRYLKEKNYNITVVG 172 (426)
Q Consensus 122 ~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~--a-~~L~e~~~~~~~~i~vig 172 (426)
..++..+.+++.+++++-|.+|.==....-+. | -.+.++.+ ..++||+|-
T Consensus 64 n~dea~~~il~mv~~~~pDlfiAGPAFnAGRYGvACG~i~kaV~-e~l~IP~vT 116 (349)
T pfam07355 64 NIEEAVAEILEMLKEEKPDLFIAGPAFNAGRYGVACGTIAKAVK-EELGIPAVT 116 (349)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHH-HHHCCCEEE
T ss_conf 99999999999998429998987663256425888999999999-986996386
No 71
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=82.33 E-value=3.7 Score=20.47 Aligned_cols=70 Identities=20% Similarity=0.175 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHH-HHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCCCCHHH-HHHHHHHHH
Q ss_conf 56999999998639988999488257899-9999999985189962-88522223477222114633565-999999999
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTT-ACDLLRYLKEKNYNIT-VVGLPKTIDNDIIPIHQSLGALT-AAQVSACFF 201 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~-vigiPKTIDNDi~~td~tiGfdT-A~~~~a~~i 201 (426)
.+...+++.+...+.|.+++.|||||..- ++-|++. +.+ +--||.===||+. .++|... ....+.+.+
T Consensus 45 g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~------~~~~LgilP~GT~NdfA---r~Lgip~~~~~~Al~~i 115 (301)
T COG1597 45 GDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGT------DDPPLGILPGGTANDFA---RALGIPLDDIEAALELI 115 (301)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCC------CCCCEEEECCCCHHHHH---HHCCCCCHHHHHHHHHH
T ss_conf 2299999998645898899963488799999887337------99817993486577889---98599945499999998
Q ss_pred HH
Q ss_conf 99
Q gi|254780227|r 202 DN 203 (426)
Q Consensus 202 ~~ 203 (426)
..
T Consensus 116 ~~ 117 (301)
T COG1597 116 KS 117 (301)
T ss_pred HC
T ss_conf 63
No 72
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.55 E-value=4.3 Score=20.07 Aligned_cols=81 Identities=11% Similarity=0.009 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 56999999998639988999488257899999999998518996288522223477222114-63356599999999999
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ-SLGALTAAQVSACFFDN 203 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~-tiGfdTA~~~~a~~i~~ 203 (426)
+.....++.+.++++|++|+++..-+-.....+.+ .++|+|.+ |+++++.+. ++++|-. ....++++.
T Consensus 42 ~~e~~~i~~l~~~~vdGiIl~~~~~~~~~~~~~~~------~~~PvV~i----~~~~~~~~~~~V~~Dn~-~~~~~~~~~ 110 (269)
T cd06293 42 ERELTYLRWLDTNHVDGLIFVTNRPDDGALAKLIN------SYGNIVLV----DEDVPGAKVPKVFCDNE-QGGRLATRH 110 (269)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEE----ECCCCCCCCCEEEECHH-HHHHHHHHH
T ss_conf 99999999998469999998068899799999996------59999999----57788899988997679-999999999
Q ss_pred HHHHHHHCCCCEEEEE
Q ss_conf 9987751666169999
Q gi|254780227|r 204 ISNERSATPRSLIIHE 219 (426)
Q Consensus 204 l~~~A~s~~~~~~iVE 219 (426)
+. + .. |+++.++-
T Consensus 111 L~-~-~G-~~~I~~i~ 123 (269)
T cd06293 111 LA-R-AG-HRRIAFVG 123 (269)
T ss_pred HH-H-HC-CCEEEEEC
T ss_conf 99-8-29-98389954
No 73
>TIGR00018 panC pantoate--beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis . Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway .; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process.
Probab=79.62 E-value=2.2 Score=21.90 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCC-CCCHHHHHHHHHCCCCCCCHH-----------HHHH--------HHHHC
Q ss_conf 999999999999877516661699997698-742899998740143323101-----------1111--------11000
Q gi|254780227|r 194 AQVSACFFDNISNERSATPRSLIIHEVMGR-NCGWLTAYSAHCYLNMIQDRN-----------YIDG--------FIFSP 253 (426)
Q Consensus 194 ~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR-~aG~LAl~~ala~ga~~~~i~-----------~~~~--------~~~~~ 253 (426)
+....+.+.++..+. .-.+++.||=|||- |.||..|..-=...++.++.+ |+.+ -....
T Consensus 7 i~~L~~~~~q~~~eG-rfrk~vGfVPTMG~LH~GH~sL~~~a~~End~vvvSIFVNP~QFgp~EDl~~YPR~l~~D~~l~ 85 (310)
T TIGR00018 7 IEELREYIKQLEREG-RFRKTVGFVPTMGALHEGHLSLIDRAVKENDLVVVSIFVNPLQFGPNEDLEAYPRDLEEDLALL 85 (310)
T ss_pred HHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHCCCCHHHHHHHH
T ss_conf 789999999865168-5012331226731015678999999986688589999757878888754544579858999999
Q ss_pred CCCCCCCCCCCC
Q ss_conf 145765232878
Q gi|254780227|r 254 DFKGIDGVYLPE 265 (426)
Q Consensus 254 ~~~~~d~iliPE 265 (426)
+..++|+++.|.
T Consensus 86 E~lgVd~~FaP~ 97 (310)
T TIGR00018 86 EKLGVDVVFAPK 97 (310)
T ss_pred HHCCCCEEECCC
T ss_conf 838965885572
No 74
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=76.76 E-value=4.6 Score=19.85 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=20.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999836877514899999999999985699789998
Q gi|254780227|r 32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYY 67 (426)
Q Consensus 32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~ 67 (426)
++++|+| ||.-|++-++..+... ..-|+-+
T Consensus 66 v~~~t~G---PG~tN~~tgl~~A~~d---~~Pvl~i 95 (535)
T TIGR03394 66 VAAVTYG---AGAFNMVNAIAGAYAE---KSPVVVI 95 (535)
T ss_pred EEEECCC---HHHHHHHHHHHHHHHH---CCCEEEE
T ss_conf 9996657---7899999999999961---9986999
No 75
>pfam00781 DAGK_cat Diacylglycerol kinase catalytic domain. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The catalytic domain is assumed from the finding of bacterial homologues. YegS is the Escherichia coli protein in this family whose crystal structure reveals an active site in the inter-domain cleft formed by four conserved sequence motifs, revealing a novel metal-binding site. The residues of this site are conserved across the family.
Probab=76.31 E-value=5.7 Score=19.27 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=35.0
Q ss_pred HCCCCEEEEECCHHHHHHHH-HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 63998899948825789999-9999998518996288522223477222114633565
Q gi|254780227|r 136 QSGVTILHTIGGDDTNTTAC-DLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALT 192 (426)
Q Consensus 136 ~~~Id~Li~IGGdgS~~~a~-~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdT 192 (426)
+...|.++++|||||+.-+. -|.+. ......++--||.=--||+. .++|...
T Consensus 52 ~~~~d~vv~~GGDGTv~evvngl~~~--~~~~~~plgiIP~GTgNdfa---~~lgip~ 104 (127)
T pfam00781 52 GDFKDLVVVAGGDGTVNEVLNGLAGR--EDRLKPPLGIIPLGTGNDFA---RALGIPG 104 (127)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHC--CCCCCCCEEEECCCCHHHHH---HHCCCCC
T ss_conf 35888899988975799999999746--88778978992487675899---9829999
No 76
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.08 E-value=5.8 Score=19.23 Aligned_cols=129 Identities=14% Similarity=0.030 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 56999999998639988999488257899999999998518996288522223477222114633565999999999999
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNI 204 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l 204 (426)
+..+.+.+.+..+.+|++|+++...+-.....|. + .++|+|.+=...++ ... ..+++.|- ..-..++++.+
T Consensus 47 ~~~~~~~~~l~~~~vDGiIi~~~~~~~~~~~~l~----~--~~iP~V~i~r~~~~-~~~-~~~V~~Dn-~~~~~~a~~~L 117 (270)
T cd06294 47 ELLEEVKKMIQQKRVDGFILLYSREDDPIIDYLK----E--EKFPFVVIGKPEDD-KEN-ITYVDNDN-IQAGYDATEYL 117 (270)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH----H--CCCCEEEECCCCCC-CCC-CEEEECCH-HHHHHHHHHHH
T ss_conf 9999999999827998899957989849999999----7--69999998775688-899-84993777-99999999999
Q ss_pred HHHHHHCCCCEEEEEEC-C------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 98775166616999976-9------8742899998740143323101111111000145765232878655989999999
Q gi|254780227|r 205 SNERSATPRSLIIHEVM-G------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERL 277 (426)
Q Consensus 205 ~~~A~s~~~~~~iVEvM-G------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i 277 (426)
.. .. |+++.++--. . |..||..+... .+..++..++++..++.+.-.+.+
T Consensus 118 ~~--~G-hr~I~~i~~~~~~~~~~~R~~Gf~~al~~--------------------~g~~~~~~~~~~~~~~~~~~~~~~ 174 (270)
T cd06294 118 IK--LG-HKKIAFVGGDLDLEVTQDRLQGYKQALED--------------------HGIPDRNEVIISLDFSEEGGYKAL 174 (270)
T ss_pred HH--CC-CCEEEEECCCCCCHHHHHHHHHHHHHHHH--------------------CCCCCCCCEEECCCCCHHHHHHHH
T ss_conf 97--69-95699981899865899999999999998--------------------699977333313776678899999
Q ss_pred HHHHHCCC
Q ss_conf 99850289
Q gi|254780227|r 278 SKVMEKKG 285 (426)
Q Consensus 278 ~~~~~~~~ 285 (426)
++.++...
T Consensus 175 ~~ll~~~~ 182 (270)
T cd06294 175 KKLLEQHP 182 (270)
T ss_pred HHHHHCCC
T ss_conf 99984699
No 77
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=75.52 E-value=3.6 Score=20.54 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=34.6
Q ss_pred HHHHHHCCCCEEEEECCHHHHHHHH----------------HHHHHHHHCCCCCEEEEECCC-CCCCCC-CCCCCCCHHH
Q ss_conf 9999863998899948825789999----------------999999851899628852222-347722-2114633565
Q gi|254780227|r 131 AHHLMQSGVTILHTIGGDDTNTTAC----------------DLLRYLKEKNYNITVVGLPKT-IDNDII-PIHQSLGALT 192 (426)
Q Consensus 131 ~~~l~~~~Id~Li~IGGdgS~~~a~----------------~L~e~~~~~~~~i~vigiPKT-IDNDi~-~td~tiGfdT 192 (426)
+..++..++|+||+=||.|..+... ++-..+.+.+.+|-.++|--. +-.=++ +...|+|.|.
T Consensus 75 l~~~~~~d~DaLiiPGGfGaAKNLs~fA~~g~~~~v~~~V~~~i~~f~~a~KPiG~iCIAP~l~a~vl~~~~~~TiG~D~ 154 (213)
T cd03133 75 LAKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILGEGVEVTIGNDA 154 (213)
T ss_pred HHHCCHHHCCEEEECCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCEEECCCCH
T ss_conf 45699867898997885145553100210588756989999999999984999999757899999981898289668987
Q ss_pred H
Q ss_conf 9
Q gi|254780227|r 193 A 193 (426)
Q Consensus 193 A 193 (426)
.
T Consensus 155 ~ 155 (213)
T cd03133 155 G 155 (213)
T ss_pred H
T ss_conf 8
No 78
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=75.15 E-value=6.1 Score=19.08 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=33.0
Q ss_pred HHHHHHHHH--HCCCCEEEEECCHHHHHHHHHHHHHHHH-------------C----CCCCEEEEECCC
Q ss_conf 999999998--6399889994882578999999999985-------------1----899628852222
Q gi|254780227|r 127 LEVSAHHLM--QSGVTILHTIGGDDTNTTACDLLRYLKE-------------K----NYNITVVGLPKT 176 (426)
Q Consensus 127 ~~~~~~~l~--~~~Id~Li~IGGdgS~~~a~~L~e~~~~-------------~----~~~i~vigiPKT 176 (426)
.+..++.++ +.+.|.+|.+||--++..|..++-.... + ...+|+|.||-|
T Consensus 67 v~~~~~~~~~~e~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~lP~iaIPTT 135 (355)
T TIGR03405 67 LDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTT 135 (355)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEECCC
T ss_conf 999999998423699889980785187889999999718975888988733776775578998984389
No 79
>PRK06179 short chain dehydrogenase; Provisional
Probab=74.48 E-value=4.7 Score=19.80 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 899999999985028953899504211111
Q gi|254780227|r 270 LEVEIERLSKVMEKKGSVAIFVSEGACRDV 299 (426)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~vIVvsEG~~~~~ 299 (426)
+..+.+.+...+..++--|..|+.|.....
T Consensus 152 l~~~t~sla~El~~~gIrVn~v~PG~v~T~ 181 (270)
T PRK06179 152 VEGYSESLDHEVRQFGIRVSLVEPAYTRTS 181 (270)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCC
T ss_conf 999999999985012968999984789171
No 80
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=74.35 E-value=6.4 Score=18.95 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 6745699999999863998---89994882578999999999985189962885222234772221146335659999
Q gi|254780227|r 122 KDENPLEVSAHHLMQSGVT---ILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQV 196 (426)
Q Consensus 122 ~~~~~~~~~~~~l~~~~Id---~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~ 196 (426)
++-+.++++.+.+.+++++ .++.+||.=..+-|--.|..+ .-+|+.|.||-|.- .-+|.|+|--||+|+
T Consensus 74 K~l~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~DlaGF~As~y---~RGi~~i~iPTTLL---a~vDssiGgKtgvN~ 145 (360)
T PRK00002 74 KSLETLERIYDALLEAGLDRSDTLIALGGGVVGDLAGFAAATY---MRGIRFIQVPTTLL---AQVDSSVGGKTGINH 145 (360)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHH---HCCCCEEECCCHHH---HHHHCCCCCCCCCCC
T ss_conf 7798999999999976999887315306637658899999998---47997797460089---998144564420569
No 81
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed
Probab=74.20 E-value=6.4 Score=18.93 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=43.0
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 87633799983687751489999999999998569978999838366010799130462698888746407874003367
Q gi|254780227|r 26 DMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSR 105 (426)
Q Consensus 26 ~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR 105 (426)
+|++|||+|.-|||. -+++.+... . ..|++|+|+. ++. |+... .. +.|.
T Consensus 1 ~~sk~rV~VamSGGV----DSsVaA~LL--~--~~Gy~V~Gv~------m~~---------w~~~~---~~-----~~C~ 49 (355)
T PRK00143 1 DPSKKRVVVGMSGGV----DSSVAAALL--K--EQGYDVIGLF------MKL---------WDDDD---GS-----GGCC 49 (355)
T ss_pred CCCCCEEEEEECCCH----HHHHHHHHH--H--HCCCCEEEEE------EEC---------CCCCC---CC-----CCCC
T ss_conf 998888999916789----999999999--9--7799589999------988---------76887---77-----8998
Q ss_pred CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8886530111012345674569999999986399889994
Q gi|254780227|r 106 VKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTI 145 (426)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~I 145 (426)
.+++++.+...+++++|...++-
T Consensus 50 -----------------~~~d~~dA~~va~~LgIp~~v~d 72 (355)
T PRK00143 50 -----------------AEEDIADARAVADKLGIPLYVVD 72 (355)
T ss_pred -----------------CHHHHHHHHHHHHHCCCCEEEEC
T ss_conf -----------------57889999999998698579968
No 82
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=74.08 E-value=6.5 Score=18.91 Aligned_cols=124 Identities=13% Similarity=0.138 Sum_probs=61.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999863998899948825789999999999851899628852222347722211-46335659999999999999
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH-QSLGALTAAQVSACFFDNIS 205 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td-~tiGfdTA~~~~a~~i~~l~ 205 (426)
-...++.|.++++|++|+.+...+-.....+ . ..++|+|.+ |...+..+ .+++.|- ..-+..+++.+.
T Consensus 44 e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~----~--~~~iPvV~i----dr~~~~~~~~~V~~Dn-~~~~~~a~~~L~ 112 (264)
T cd06274 44 ERETVETLIARQVDALIVAGSLPPDDPYYLC----Q--KAGLPVVAL----DRPGDPSRFPSVVSDN-RDGAAELTRELL 112 (264)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHH----H--HCCCCEEEE----ECCCCCCCCCEEEECH-HHHHHHHHHHHH
T ss_conf 9999999996699879976788987999999----9--759988998----5058989997899766-999999999999
Q ss_pred HHHHHCCCCEEEEE-EC------CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 87751666169999-76------987428999987401433231011111110001457652328786559899999999
Q gi|254780227|r 206 NERSATPRSLIIHE-VM------GRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLS 278 (426)
Q Consensus 206 ~~A~s~~~~~~iVE-vM------GR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~ 278 (426)
. .. |+++.++- .. -|..||..+..... ...+..++.+..++.+.-.+.+.
T Consensus 113 ~--~G-hr~I~~i~~~~~~~~~~~R~~Gf~~al~~~g--------------------~~~~~~~i~~~~~~~~~g~~~~~ 169 (264)
T cd06274 113 A--AP-PEEVLFLGGLPELSPSRERLAGFRQALADAG--------------------LPVQPDWIYAEGYSPESGYQLMA 169 (264)
T ss_pred H--CC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCC--------------------CCCCCEEEEECCCCHHHHHHHHH
T ss_conf 8--59-9669997689877309999999999999779--------------------98774079826888789999999
Q ss_pred HHHHCC
Q ss_conf 985028
Q gi|254780227|r 279 KVMEKK 284 (426)
Q Consensus 279 ~~~~~~ 284 (426)
+.+++.
T Consensus 170 ~~l~~~ 175 (264)
T cd06274 170 ELLARL 175 (264)
T ss_pred HHHHHC
T ss_conf 999865
No 83
>TIGR01481 ccpA catabolite control protein A; InterPro: IPR006377 Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [e.g. acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription.
Probab=72.54 E-value=7 Score=18.67 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=59.0
Q ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998639988999488257899999999998518996288522223477222114633565999999999999987
Q gi|254780227|r 128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNE 207 (426)
Q Consensus 128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~ 207 (426)
-.++.||-...+|++|+.|| ....+|.|+|..- ..||| +-.|.|-|=...--+|=|--|.+.++. ++-
T Consensus 106 ~~v~NTLl~KQVDGiIfmG~----~Ite~~re~F~rs--~~PVV-LAGt~D~~~~~pSVNIDy~~A~kEav~---~l~-- 173 (332)
T TIGR01481 106 VQVLNTLLSKQVDGIIFMGG----EITEKLREEFSRS--PVPVV-LAGTVDKENELPSVNIDYKQATKEAVK---ELI-- 173 (332)
T ss_pred HHHHHHHHHHHCCEEEECCH----HHHHHHHHHHHCC--CCCEE-EECCCCCCCCCCCCCCCHHHHHHHHHH---HHH--
T ss_conf 67666533101011344430----2108999997128--99889-953548654677310167899999999---986--
Q ss_pred HHHCCCCEEEEEECCCC
Q ss_conf 75166616999976987
Q gi|254780227|r 208 RSATPRSLIIHEVMGRN 224 (426)
Q Consensus 208 A~s~~~~~~iVEvMGR~ 224 (426)
+..| +++-|| -|-+
T Consensus 174 ~~Gh-K~iAfv--~G~L 187 (332)
T TIGR01481 174 AKGH-KKIAFV--SGSL 187 (332)
T ss_pred HCCC-CEEEEE--ECCC
T ss_conf 3358-268887--3675
No 84
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=72.31 E-value=7.1 Score=18.64 Aligned_cols=96 Identities=18% Similarity=0.074 Sum_probs=62.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCE------ECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 998368775148999999999999856997899983836601079913------04626988887464078740033678
Q gi|254780227|r 33 AFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKI------TITEDMRQNAEQLLSYGGSPIGNSRV 106 (426)
Q Consensus 33 ~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~------~l~~l~~~~v~~~~~~GGt~LgtsR~ 106 (426)
+++.+||+.|-.... +. ...+..-++++-+|..-|++.... +++.++.+..+.+...+-.++...
T Consensus 1 ~lIi~nG~~~~~~~~-----~~--~~~~~~~iIaaDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p-- 71 (208)
T cd07995 1 ALILLGGPLPDSPLL-----LK--LWKKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFP-- 71 (208)
T ss_pred CEEEECCCCCCHHHH-----HH--HHHHCCEEEEECCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEECC--
T ss_conf 999989999973899-----99--986399899981189999986998789985543489899999885398389997--
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 88653011101234567456999999998639988999488257
Q gi|254780227|r 107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS 150 (426)
..++.-+++++++-+.+++.+.++++|+.|.
T Consensus 72 -------------~~kD~TD~ekAl~~~~~~~~~~i~i~Ga~Gg 102 (208)
T cd07995 72 -------------DEKDFTDFEKALKLALERGADEIVILGATGG 102 (208)
T ss_pred -------------CCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf -------------1036407999999999779988999937899
No 85
>KOG4180 consensus
Probab=71.95 E-value=3 Score=21.08 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC-----------------CEEEEE
Q ss_conf 626988887464078740033678886530111012345674569999999986399-----------------889994
Q gi|254780227|r 83 TEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGV-----------------TILHTI 145 (426)
Q Consensus 83 ~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~I-----------------d~Li~I 145 (426)
..++.+.+..++..-||-.|.--.+-. ...+.+..+.+-|.+.+| |.+|-.
T Consensus 45 ~~lspdql~q~L~srgtdv~~ll~~hK------------vhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~Visv 112 (395)
T KOG4180 45 SGLSPDQLLQYLESRGTDVGRLLSKHK------------VHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISV 112 (395)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHH------------HHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHEEEEE
T ss_conf 589989999999862851888888767------------78889999999986178630353453326757623179971
Q ss_pred CCHHHHHHHHH-HHHHHHHCCCCCEEEEEC
Q ss_conf 88257899999-999998518996288522
Q gi|254780227|r 146 GGDDTNTTACD-LLRYLKEKNYNITVVGLP 174 (426)
Q Consensus 146 GGdgS~~~a~~-L~e~~~~~~~~i~vigiP 174 (426)
|||||+--|+- +.+ -..|||||-
T Consensus 113 GGDGTfL~Aasrv~~------~~~PViGvN 136 (395)
T KOG4180 113 GGDGTFLLAASRVID------DSKPVIGVN 136 (395)
T ss_pred CCCCCEEEHHHHHHC------CCCCEEEEC
T ss_conf 686313210012221------688445534
No 86
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=71.08 E-value=4.3 Score=20.03 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=50.0
Q ss_pred EEEEEEECCC---CCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3799983687---7514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r 30 HKVAFLTAGG---IAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV 106 (426)
Q Consensus 30 krI~IltsGG---~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~ 106 (426)
|||||+.||= |=.=++-++..+.. +.+ .|.++.-|---..-. .-+.+.-|..-+.+|-
T Consensus 2 kkvaViLSGCGv~DGSEIhEavltlla-L~r--~ga~~~cfAPd~~Q~----------------hvvnH~tge~~~e~RN 62 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLA-LDR--AGAEAQCFAPDIPQL----------------HVINHLTGEEMAETRN 62 (217)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHH-HHH--CCCEEEEECCCCCCC----------------CCEECCCCCCCCHHHH
T ss_conf 618999607888774089999999999-986--798679976996520----------------1211258983732477
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 8865301110123456745699999999863998899948825789999999
Q gi|254780227|r 107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLL 158 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~ 158 (426)
-+ .+...+.|+.+. -+..++..++|+||+=||.|..+....++
T Consensus 63 VL-vESARIaRG~I~--------~l~~~~~~d~DaLI~PGGfGaAKNLs~fA 105 (217)
T PRK11780 63 VL-VESARIARGEIK--------DLAEADAEDFDALIVPGGFGAAKNLSNFA 105 (217)
T ss_pred HH-HHHHHHHCCCCC--------CHHHCCHHHCCEEEECCCCHHHHCCCCHH
T ss_conf 89-999887615866--------74569975678799678620443110165
No 87
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=70.96 E-value=7.6 Score=18.45 Aligned_cols=120 Identities=11% Similarity=0.093 Sum_probs=65.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99983687751489999999999998569978999838366010799130462698888746407874003367888653
Q gi|254780227|r 32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNF 111 (426)
Q Consensus 32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~ 111 (426)
||++...-.-|=.+..+.++-+.++. .|+++.-... ++
T Consensus 2 Igvi~p~~~~~f~~~~~~gi~~~a~~--~gy~~~i~~~------~~---------------------------------- 39 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAARE--AGYSVLLCNS------DE---------------------------------- 39 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH--CCCEEEEEEC------CC----------------------------------
T ss_conf 89996899769999999999999998--6998999978------99----------------------------------
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCH
Q ss_conf 01110123456745699999999863998899948825789999999999851899628852222347-72221146335
Q gi|254780227|r 112 SDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDN-DIIPIHQSLGA 190 (426)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDN-Di~~td~tiGf 190 (426)
+.+.....++.+...++|++|+.+.+.+-.....+.+ .++|+|.+-...++ +++ ++++
T Consensus 40 -----------~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~~~~~------~~iPvV~~~~~~~~~~~~----~V~~ 98 (264)
T cd06267 40 -----------DPEKEREALELLLSRRVDGIILAPSRLDDELLEELAA------LGIPVVLVDRPLDGLGVD----SVGI 98 (264)
T ss_pred -----------CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH------CCCCEEEEEECCCCCCCC----EEEE
T ss_conf -----------9899999999999579999996788899899999998------699889996047999987----9997
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 6599999999999998775166616999
Q gi|254780227|r 191 LTAAQVSACFFDNISNERSATPRSLIIH 218 (426)
Q Consensus 191 dTA~~~~a~~i~~l~~~A~s~~~~~~iV 218 (426)
|-.- ...++++.+.. .. ++++.++
T Consensus 99 D~~~-a~~~a~~~L~~--~G-~~~i~~i 122 (264)
T cd06267 99 DNRA-GAYLAVEHLIE--LG-HRRIAFI 122 (264)
T ss_pred CHHH-HHHHHHHHHHH--HC-CCCEEEE
T ss_conf 8799-99999999987--18-8856896
No 88
>pfam00532 Peripla_BP_1 family. This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (pfam00356).
Probab=70.82 E-value=7.7 Score=18.43 Aligned_cols=174 Identities=11% Similarity=0.064 Sum_probs=89.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT 109 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~ 109 (426)
..||++..-=.-|=...+++++-+.+.. .|++++-. ++..
T Consensus 2 ~TIGvivpdi~npff~~i~~gie~~a~~--~Gy~~ll~-----------------------------------~t~~--- 41 (281)
T pfam00532 2 LKLGALVPQLDEPFFQDLVKGITKAAKD--HGFDVFLL-----------------------------------AVGD--- 41 (281)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHH--CCCEEEEE-----------------------------------ECCC---
T ss_conf 5999997988618999999999999998--39989999-----------------------------------7999---
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r 110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG 189 (426)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG 189 (426)
+.+.....++.+.++++|++|+.+-..+......+. + ..++|+|.+=...+++... .++.
T Consensus 42 -------------~~~~e~~~l~~l~~~~vDGiIi~~~~~~~~~~~~~~---~--~~~iPvV~~~~~~~~~~~~--~~V~ 101 (281)
T pfam00532 42 -------------GEDTLTNAIDLLLASGADGIIITTPAPSGDDITAKA---E--GYGIPVIAADDAFDNPDGV--PCVM 101 (281)
T ss_pred -------------CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH---H--HCCCCEEEEECCCCCCCCC--CEEE
T ss_conf -------------989999999999965999899936889849999999---8--5799789992465788888--6899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 565999999999999987751666169999769-------8742899998740143323101111111000145765232
Q gi|254780227|r 190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMG-------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVY 262 (426)
Q Consensus 190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMG-------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~il 262 (426)
.|- ..-...+++.|.. ..|.+.++++...- |..||..+.... +...+..+
T Consensus 102 ~Dn-~~~~~~a~~~Li~--~Ghrr~i~~~~~~~~~~~~~~R~~Gf~~al~~~--------------------g~~~~~~~ 158 (281)
T pfam00532 102 PDD-TQAGYESTQYLIA--EGHKRPIAVMAGPASALTARERVQGFMAALAAA--------------------GREVKIYH 158 (281)
T ss_pred ECH-HHHHHHHHHHHHH--HCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHC--------------------CCCCCCEE
T ss_conf 667-9999999999998--389770477307876507899999999999975--------------------99998206
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 878655989999999998502895
Q gi|254780227|r 263 LPEMSFNLEVEIERLSKVMEKKGS 286 (426)
Q Consensus 263 iPE~~~~~~~~~~~i~~~~~~~~~ 286 (426)
+++..++.+.-.+.+++.++....
T Consensus 159 ~~~~~~~~~~g~~~~~~ll~~~~~ 182 (281)
T pfam00532 159 VATGDNDIPDAALAANAMLVSHPT 182 (281)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 883688889999999999854999
No 89
>pfam07905 PucR Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.
Probab=69.44 E-value=8.2 Score=18.24 Aligned_cols=96 Identities=19% Similarity=0.266 Sum_probs=56.0
Q ss_pred CCEEEEECCHHHCCCCC-CCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 97899983836601079-91304626988887464078740033678886530111012345674569999999986399
Q gi|254780227|r 61 KAELIYYRFGYQGLLLD-DKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGV 139 (426)
Q Consensus 61 ~~~v~G~~~G~~GL~~~-~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~I 139 (426)
+.+++ -|-.||-+. ..+.+.+ ..+...|.+ ||.++=|+=..+. .+++.+...++.|.+.+.
T Consensus 11 ~~~lv---aG~~gL~r~V~~v~i~E--~pd~~~~l~-~gElvlTtg~~~~------------~~~~~~~~~i~~L~~~g~ 72 (122)
T pfam07905 11 LAKVL---AGEEGLDRPVRWVHVSE--LPDISPWLR-GGELLLTTGYGLK------------DDPEALREFVRELAEAGA 72 (122)
T ss_pred CCEEE---CCCCCCCCCEEEEEEEC--CCCHHHHCC-CCEEEEEECCCCC------------CCHHHHHHHHHHHHHCCC
T ss_conf 98997---17655799687889762--679889636-9859997255447------------999999999999997896
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8899948825789999999999851899628852222
Q gi|254780227|r 140 TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKT 176 (426)
Q Consensus 140 d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT 176 (426)
-+|++-=|..--..-..+-+++.+ +++|++-+|..
T Consensus 73 agL~i~~g~~~~~iP~~~i~~a~~--~~~Pli~iP~~ 107 (122)
T pfam07905 73 AGLGIKTGRYIPEIPEELIAAANR--LGLPLIELPRE 107 (122)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHH--CCCCEEEECCC
T ss_conf 499994255546699999999997--49977994597
No 90
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=68.89 E-value=8.4 Score=18.16 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=8.8
Q ss_pred EEEEECCHHHHHHH
Q ss_conf 89994882578999
Q gi|254780227|r 141 ILHTIGGDDTNTTA 154 (426)
Q Consensus 141 ~Li~IGGdgS~~~a 154 (426)
..+++=|||-|.-.
T Consensus 149 rv~~~~GDgEldEg 162 (386)
T cd02017 149 KVWAFLGDGEMDEP 162 (386)
T ss_pred EEEEEECCCCCCHH
T ss_conf 38999625211509
No 91
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033 Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=68.34 E-value=8.7 Score=18.09 Aligned_cols=79 Identities=18% Similarity=0.068 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHC---CCCEEEEECCHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 45699999999863---9988999488257899-9999999985189962885222234772221146335659999999
Q gi|254780227|r 124 ENPLEVSAHHLMQS---GVTILHTIGGDDTNTT-ACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSAC 199 (426)
Q Consensus 124 ~~~~~~~~~~l~~~---~Id~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~ 199 (426)
++++..+++.++++ |-|++|+.=|=|||.. |+.|+=.++ ..+.|||-+=.=|.-|-+-+|-.+=--.|++++++
T Consensus 65 PEyW~eiAe~vk~~~~dG~DG~VI~HGTDTM~YTaaALSFML~--~~~kPvv~tGaQrs~d~~~SDA~~Nl~~A~~~A~e 142 (347)
T TIGR00519 65 PEYWVEIAEAVKKEYDDGYDGVVITHGTDTMAYTAAALSFMLE--TLPKPVVFTGAQRSSDRPSSDAALNLLCAVRAATE 142 (347)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 6257999999999851689839992378836899999999997--37997999837676766666466779999998516
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780227|r 200 FFDNI 204 (426)
Q Consensus 200 ~i~~l 204 (426)
.|..+
T Consensus 143 ~i~eV 147 (347)
T TIGR00519 143 EIKEV 147 (347)
T ss_pred CCCEE
T ss_conf 89636
No 92
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=68.26 E-value=8.7 Score=18.08 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=43.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999863998899948825789999999999851899628852222347722211463356599999999999998
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN 206 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~ 206 (426)
-...++.+.++++|++|+..++.+......+ +. ..++|+|.+-...+.+. .++..|- .+-..++++.|..
T Consensus 44 e~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~---~~--~~~iPvV~~~r~~~~~~----~~V~~D~-~~~~~~a~~~L~~ 113 (269)
T cd06281 44 ELEILRSFEQRRMDGIIIAPGDERDPELVDA---LA--SLDLPIVLLDRDMGGGA----DAVLFDH-AAGMRQAVEYLIS 113 (269)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHH---HH--HCCCCEEEEECCCCCCC----CEEEECH-HHHHHHHHHHHHH
T ss_conf 9999999985799899976777799999999---98--47998899844689999----9899875-9999999999997
Q ss_pred HHHHCCCCEEEEE
Q ss_conf 7751666169999
Q gi|254780227|r 207 ERSATPRSLIIHE 219 (426)
Q Consensus 207 ~A~s~~~~~~iVE 219 (426)
..+ +++.++-
T Consensus 114 --~G~-~~I~~i~ 123 (269)
T cd06281 114 --LGH-RRIALVG 123 (269)
T ss_pred --CCC-CCEEEEE
T ss_conf --599-8668980
No 93
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=67.09 E-value=4.9 Score=19.66 Aligned_cols=124 Identities=14% Similarity=0.018 Sum_probs=71.7
Q ss_pred HHHHHHHHHHCCCC-----EEEEECC---HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999863998-----8999488---257899999999998518996288522223477222114633565999999
Q gi|254780227|r 127 LEVSAHHLMQSGVT-----ILHTIGG---DDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSA 198 (426)
Q Consensus 127 ~~~~~~~l~~~~Id-----~Li~IGG---dgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a 198 (426)
-+.+.+++++++|. .|--++= .+|-.....+.+.+++++ || ++ .+++|++..-
T Consensus 105 p~ei~~tf~kLGIp~~e~k~Lagv~vda~~dS~~V~~~~~~~l~~~G----VI-----------f~----~~~~A~~~hp 165 (484)
T PRK11814 105 DPELLETFEKLGIPLREQKRLAGVAVDAVFDSVSVATTFKEKLAEAG----VI-----------FC----SISEAIQEHP 165 (484)
T ss_pred CHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCC----EE-----------EE----CHHHHHHHHH
T ss_conf 89999999883886778775236524322052012355689998688----59-----------96----6999999989
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf 999999987751666169999769874289999874014332310111111100014576523287865598999999--
Q gi|254780227|r 199 CFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIER-- 276 (426)
Q Consensus 199 ~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~-- 276 (426)
+.+..-.-++..... --+.||++|+-++-.. +|+|...-...++...
T Consensus 166 eLVkkylg~~v~~~d-----------~kfaALn~A~~s~G~F--------------------vYVPkgV~v~~pL~~~f~ 214 (484)
T PRK11814 166 ELVKKYLGSVVPVND-----------NFFAALNSAVFSDGSF--------------------VYIPKGVRCPMELSTYFR 214 (484)
T ss_pred HHHHHHHHCCCCCCC-----------CHHHHHHHHHHCCCEE--------------------EEECCCEEECCEEEEEEE
T ss_conf 999999846568751-----------0889988998639769--------------------996698267536799999
Q ss_pred HHH-HHHCCCCEEEEEECCCCCCCC
Q ss_conf 999-850289538995042111111
Q gi|254780227|r 277 LSK-VMEKKGSVAIFVSEGACRDVI 300 (426)
Q Consensus 277 i~~-~~~~~~~~vIVvsEG~~~~~~ 300 (426)
+.. ......+.+||+-||+....+
T Consensus 215 i~~~~~~qf~htLIIaEegS~v~yi 239 (484)
T PRK11814 215 INAANTGQFERTLIIADEGSYVSYL 239 (484)
T ss_pred ECCCCCCEEEEEEEEECCCCEEEEE
T ss_conf 8577654001579996278579999
No 94
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=66.92 E-value=9.2 Score=17.91 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 45699999999863998---899948825789999999999851899628852222347722211463356599999
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVT---ILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVS 197 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id---~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~ 197 (426)
...++++.+.+.+.++| .++.+||.=-...+--.+. .- .-+|+.|-||-|. +.-+|-|+|--|++|+-
T Consensus 94 ~~~~~~i~~~l~~~~~~R~~~viaiGGGvv~D~~GfaAs-~y--~RGi~~i~iPTTl---La~vDssvGgKtgvN~~ 164 (390)
T PRK06203 94 PQLLEQLLAAINEAGIDRHSYVLAIGGGAVLDMVGYAAA-TA--HRGVRLIRIPTTV---LAQNDSGVGVKNGINAF 164 (390)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHH-HH--HCCCCEEECCCHH---HHHHHCCCCCCCEECCC
T ss_conf 999999999999759998975999768399789999999-98--6399852155469---88871356763125589
No 95
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B; InterPro: IPR010186 Some anaerobic bacteria can conserve energy by a soluble substrate level phosphorylation system which reduces glycine to acetyl-phosphate . The exact mechanism by which this conversion occurs is not currently known, but the glycine reductase system includes three sequentially acting proteins known as protein A, protein B and protein C. Protein B, the substrate-specific component of this complex, is a selenoprotein thought to convert glycine to a protein-bound Se-carboxymethyl selenoether intermediate. This intermediate is then thought to be passed to protein A, another selenoprotein, which uses it to acetylate the final component of this system, protein C. Protein C subsequently phosphorylates this acetyl group, generating acetyl phosphate. This entry represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this entry, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity acting on X-H and Y-H to form an X-Y bond with a disulfide as acceptor, 0030700 glycine reductase complex.
Probab=66.15 E-value=1.7 Score=22.65 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=27.0
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 487633799983687751489999999999998569978999
Q gi|254780227|r 25 KDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIY 66 (426)
Q Consensus 25 ~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G 66 (426)
-|+-+|.+=|+...--|.||--++-++.+.+.++-+|.++.-
T Consensus 121 ~d~~~k~vyv~~t~dsaaGmrk~lPa~akfa~k~akGeei~s 162 (431)
T TIGR01917 121 LDVYKKEVYVISTADSAAGMRKALPALAKFALKLAKGEEILS 162 (431)
T ss_pred CCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 411100367862551222356545889999876514531368
No 96
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=66.04 E-value=9.6 Score=17.80 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=52.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99983687751489999999999998569978999838366010799130462698888746407874003367888653
Q gi|254780227|r 32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNF 111 (426)
Q Consensus 32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~ 111 (426)
||++...=.-|=-..++.++-+.++.. |++++-+ .+..
T Consensus 2 IGvivp~l~npff~~~~~gi~~~a~~~--Gy~~~i~-----------------------------------~s~~----- 39 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKEL--GYELTVL-----------------------------------DAQN----- 39 (268)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEE-----------------------------------ECCC-----
T ss_conf 899988897999999999999999975--9989998-----------------------------------1999-----
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 011101234567456999999998639988999488--257899999999998518996288522223477222114633
Q gi|254780227|r 112 SDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGG--DDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG 189 (426)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGG--dgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG 189 (426)
+.+...+.++.+...++|++++..- +.+......+. ..+||||.+=..++++.+ ..++|
T Consensus 40 -----------~~~~e~~~i~~l~~~~vdgiI~~p~~~~~~~~~i~~~~------~~~iPvV~id~~~~~~~~--~~~V~ 100 (268)
T cd06323 40 -----------DAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAAN------EAGIPVFTIDREANGGEV--VSQIA 100 (268)
T ss_pred -----------CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHH------HCCCCEEEECCCCCCCCC--CCEEE
T ss_conf -----------99999999999996499989975654212469999999------769968996366678886--61898
Q ss_pred HH
Q ss_conf 56
Q gi|254780227|r 190 AL 191 (426)
Q Consensus 190 fd 191 (426)
.|
T Consensus 101 ~d 102 (268)
T cd06323 101 SD 102 (268)
T ss_pred EC
T ss_conf 53
No 97
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.31 E-value=9.9 Score=17.71 Aligned_cols=128 Identities=10% Similarity=0.060 Sum_probs=69.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN 110 (426)
Q Consensus 31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~ 110 (426)
|||++..-=.-|=...+++|+-+.++.+..+..++.. .++.
T Consensus 1 KIGvivp~i~npff~~~~~gie~~a~~~g~~~~v~~~-----------------------------------~~~~---- 41 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVV-----------------------------------SADY---- 41 (271)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE-----------------------------------CCCC----
T ss_conf 9899948998989999999999999971997699980-----------------------------------7988----
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 30111012345674569999999986399889994882578999999999985189962885222234772221146335
Q gi|254780227|r 111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGA 190 (426)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGf 190 (426)
+.+.....++.+...++|++++.-.|..... ..+. .+. ..+||||.+ |.+.++.+.++|.
T Consensus 42 ------------d~~~q~~~i~~li~~~vDgIii~~~~~~~~~-~~i~-~a~--~~gIpvV~~----d~~~~~~~~~V~~ 101 (271)
T cd06321 42 ------------DLNKQVSQIDNFIAAKVDLILLNAVDSKGIA-PAVK-RAQ--AAGIVVVAV----DVAAEGADATVTT 101 (271)
T ss_pred ------------CHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-HHHH-HHH--HCCCEEEEE----EECCCCCCCEEEE
T ss_conf ------------9999999999999749988999347840359-9999-999--749918998----6058998728997
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 65999999999999987751666169999
Q gi|254780227|r 191 LTAAQVSACFFDNISNERSATPRSLIIHE 219 (426)
Q Consensus 191 dTA~~~~a~~i~~l~~~A~s~~~~~~iVE 219 (426)
|-.. ....+.+.+... ...++++.++.
T Consensus 102 dn~~-~g~~a~~~L~~~-~~~~~~i~~~~ 128 (271)
T cd06321 102 DNVQ-AGEISCQYLADR-LGGKGNVAILN 128 (271)
T ss_pred CHHH-HHHHHHHHHHHH-CCCCEEEEEEC
T ss_conf 6999-999999878875-28960799975
No 98
>TIGR00250 TIGR00250 conserved hypothetical protein TIGR00250; InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VIIcolicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma urealyticum (Q9PQY7 from SWISSPROT, ). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase . This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC . ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0004518 nuclease activity, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus.
Probab=64.98 E-value=6 Score=19.13 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=41.2
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 39988999488257899999999998518996288522223477222114633565999999999999987751666169
Q gi|254780227|r 137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLI 216 (426)
Q Consensus 137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~ 216 (426)
.+|.++..--+++-. +...|.+-.++.+.+.-|||.|+|+|..+.. .|. +.+.=|..-+.+++
T Consensus 24 ~gi~tik~~~~~~d~-Gl~~i~~l~ke~~~d~~vvGlP~nM~Gt~g~-------~~~---------~~~kFA~r~~~~~~ 86 (133)
T TIGR00250 24 QGIPTIKAQDGEPDW-GLSRIEELLKEWKVDKIVVGLPLNMDGTVGP-------LTK---------RAQKFAKRLEGRFG 86 (133)
T ss_pred CCCHHHHHCCCCCCC-CHHHHHHHHHHCCCCEEEECCCCCCCCCCCH-------HHH---------HHHHHHHHHHHHHC
T ss_conf 440311210488862-1799999873158897886178787887250-------268---------88999988655406
Q ss_pred E-EEECCCCCCHHHHHHHH
Q ss_conf 9-99769874289999874
Q gi|254780227|r 217 I-HEVMGRNCGWLTAYSAH 234 (426)
Q Consensus 217 i-VEvMGR~aG~LAl~~al 234 (426)
+ |+.|=-+=.=..+.+.|
T Consensus 87 v~v~l~DERL~t~~A~~~L 105 (133)
T TIGR00250 87 VPVELMDERLSTVEAESQL 105 (133)
T ss_pred CCEEEECCCCCHHHHHHHH
T ss_conf 6437861761378999988
No 99
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.71 E-value=11 Score=17.52 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=43.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999863998899948825789999999999851899628852222347-72221146335659999999999999
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDN-DIIPIHQSLGALTAAQVSACFFDNIS 205 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDN-Di~~td~tiGfdTA~~~~a~~i~~l~ 205 (426)
-...++.+.+.++|++|+.+.+-+-.....+ ..++|+|.+-.+.++ +++ ++.+|- .....++++.+.
T Consensus 44 e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~-------~~~iPvV~i~~~~~~~~~~----~V~~Dn-~~~~~~~~~~L~ 111 (265)
T cd06290 44 ELEALELLKSRRVDALILLGGDLPEEEILAL-------AEEIPVLAVGRRVPGPGAA----SIAVDN-FQGGYLATQHLI 111 (265)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-------HCCCCEEEECCCCCCCCCC----EEEECH-HHHHHHHHHHHH
T ss_conf 9999999996599989992688885999998-------5599989982567889999----898477-999999999999
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 8775166616999
Q gi|254780227|r 206 NERSATPRSLIIH 218 (426)
Q Consensus 206 ~~A~s~~~~~~iV 218 (426)
. ..+ +++.++
T Consensus 112 ~--~G~-~~i~~i 121 (265)
T cd06290 112 D--LGH-RRIAHI 121 (265)
T ss_pred H--HCC-CCEEEE
T ss_conf 8--299-865560
No 100
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=63.65 E-value=11 Score=17.51 Aligned_cols=130 Identities=15% Similarity=0.009 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 56999999998639988999488257899999999998518996288522223477222114633565999999999999
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNI 204 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l 204 (426)
+..+..++.+.+.++|++|+.+-+.+-.....|.+ .++|+|-+-.+.+++ .++++.+|- .....++++.+
T Consensus 42 ~~e~~~i~~l~~~~vDGiIi~~~~~~~~~~~~l~~------~~iPvV~~~~~~~~~---~~~~V~~Dn-~~~~~~a~~~L 111 (268)
T cd01575 42 EREEELLRTLLSRRPAGLILTGLEHTERTRQLLRA------AGIPVVEIMDLPPDP---IDMAVGFSH-AEAGRAMARHL 111 (268)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEECCCCCCC---CCCEEECCH-HHHHHHHHHHH
T ss_conf 99999999999569999999437799899999997------799699848868888---885897388-99999999999
Q ss_pred HHHHHHCCCCEEEEEECCCCCCHHHH------HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98775166616999976987428999------987401433231011111110001457652328786559899999999
Q gi|254780227|r 205 SNERSATPRSLIIHEVMGRNCGWLTA------YSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLS 278 (426)
Q Consensus 205 ~~~A~s~~~~~~iVEvMGR~aG~LAl------~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~ 278 (426)
.. . -|+++.++. |....+.+. ..+++ ..+..+...++.+.+.+.+.-.+.++
T Consensus 112 ~~--~-G~~~i~~i~--~~~~~~~~~~R~~G~~~al~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~ 169 (268)
T cd01575 112 LA--R-GYRRIGFLG--ARMDDTRAQQRLEGFRAALR-----------------AAGLDPPLVVTTPEPSSFALGRELLA 169 (268)
T ss_pred HH--C-CCCEEEEEC--CCCCCHHHHHHHHHHHHHHH-----------------HCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 97--4-997699984--89887369999999999999-----------------76989880899548998899999999
Q ss_pred HHHHCCCC
Q ss_conf 98502895
Q gi|254780227|r 279 KVMEKKGS 286 (426)
Q Consensus 279 ~~~~~~~~ 286 (426)
+.++....
T Consensus 170 ~~l~~~~~ 177 (268)
T cd01575 170 ELLARWPD 177 (268)
T ss_pred HHHHCCCC
T ss_conf 99956999
No 101
>KOG1342 consensus
Probab=63.21 E-value=11 Score=17.46 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=29.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 99999999863998899948825789999999999851899628852222347722211
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH 185 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td 185 (426)
..+.++.+++.++--|++=||.=|.+..++...|. + -|.+-..++|++|..|
T Consensus 280 h~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYe------T-~v~~~~~~~~elP~n~ 331 (425)
T KOG1342 280 HAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYE------T-GVLLDQELPNELPYND 331 (425)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH------H-HHHHCCCCCCCCCCCC
T ss_conf 89999999973986799747865513478899887------6-6741765643278741
No 102
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=62.56 E-value=11 Score=17.39 Aligned_cols=66 Identities=14% Similarity=-0.137 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999986399889994882578999999999985189962885222234772221146335659999999999999
Q gi|254780227|r 128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS 205 (426)
Q Consensus 128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~ 205 (426)
..+.+.+....+|++|+.+.+.+-.....+.+ .++|+|.+ |.+.++.+ |+..|-. .-...+++.|.
T Consensus 45 ~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~------~~~PvV~i----d~~~~~~~-~v~~Dn~-~~~~~a~~~L~ 110 (269)
T cd06297 45 RYLESTTLAYLTDGLLLASYDLTERLAERRLP------TERPVVLV----DAENPRFD-SFYLDNR-LGGRLAGAYLA 110 (269)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH------CCCCEEEE----ECCCCCCC-EEEECHH-HHHHHHHHHHH
T ss_conf 99999998448887997788999899999986------39989999----33789989-8997729-99999999999
No 103
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=61.03 E-value=12 Score=17.21 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCC-E-EEEECCH-----HHCCCCCCCEECCCCCHHHHHHHHHCC-------CCCCCCCCCC
Q ss_conf 148999999999999856997-8-9998383-----660107991304626988887464078-------7400336788
Q gi|254780227|r 42 PCLSSIIGMLINHYNKILPKA-E-LIYYRFG-----YQGLLLDDKITITEDMRQNAEQLLSYG-------GSPIGNSRVK 107 (426)
Q Consensus 42 PG~N~~I~~iv~~a~~~~~~~-~-v~G~~~G-----~~GL~~~~~~~l~~l~~~~v~~~~~~G-------Gt~LgtsR~~ 107 (426)
+.+..-++..++.+..+.|.. . -||.-++ -.|+++.+. ...+-|.+.++.|.+.- -|.+|++|
T Consensus 11 ~~g~~~L~~t~~~L~~l~P~FvSVTyGAgGs~~~~~~~G~l~~~~-R~r~~T~~~~~~I~~~~~~~~v~HLtC~~~t~-- 87 (302)
T TIGR00676 11 EEGEENLWETVDRLEQLDPDFVSVTYGAGGSTRDRLGDGLLKRRI-RIRPGTVRIVRRIKKETGIPTVPHLTCIGSTR-- 87 (302)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH--
T ss_conf 356899999999974269985888654888524658897546664-26777899999998732886300000236898--
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHH-----------HHHHHHHHHHHHHC
Q ss_conf 8653011101234567456999999998639988999488257-----------89999999999851
Q gi|254780227|r 108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT-----------NTTACDLLRYLKEK 164 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS-----------~~~a~~L~e~~~~~ 164 (426)
++++.+++.++.+||..++..=||=. +..|..|-++.++.
T Consensus 88 -----------------~e~~~~L~~y~~~Gi~~ilALRGD~p~~~~~~~~~~~~~yA~eLV~~Ir~~ 138 (302)
T TIGR00676 88 -----------------EEIEEILREYRELGIRNILALRGDPPDETDFEPAPGGFKYASELVEFIRSE 138 (302)
T ss_pred -----------------HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf -----------------999999999987488679874376888886565887667768999999836
No 104
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=60.83 E-value=12 Score=17.19 Aligned_cols=44 Identities=14% Similarity=0.100 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 6999999998639988999488257899999999998518996288522
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLP 174 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiP 174 (426)
.....++.+.+.++|++|+++.+........+. +..++|+|.+-
T Consensus 100 ~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~-----~~~~iP~V~~d 143 (327)
T PRK10423 100 RMNRNLETLMQKRVDGLLLLCTETHQPSREIMQ-----RYPSVPTVMMD 143 (327)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH-----HCCCCCEEEEC
T ss_conf 999999999955987699974777762899997-----27998689963
No 105
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=60.65 E-value=6.9 Score=18.73 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 99999999863998899948825789999
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTAC 155 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~ 155 (426)
..+..+.+++++|| ++.||+-|+.-|.
T Consensus 8 ~p~~a~vf~~~gID--FCCgG~~~L~eac 34 (216)
T TIGR03652 8 IPRAARIFRKYGID--FCCGGNVSLAEAC 34 (216)
T ss_pred CCCHHHHHHHCCCC--EECCCCHHHHHHH
T ss_conf 94488999992972--0289961699999
No 106
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=60.42 E-value=12 Score=17.15 Aligned_cols=83 Identities=12% Similarity=0.033 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 69999999986399889994882578999-9999999851899628852222347-722211463356599999999999
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTA-CDLLRYLKEKNYNITVVGLPKTIDN-DIIPIHQSLGALTAAQVSACFFDN 203 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a-~~L~e~~~~~~~~i~vigiPKTIDN-Di~~td~tiGfdTA~~~~a~~i~~ 203 (426)
.....++.|.++++|++|+++...+.... ..+.+.+++ .++|+|.+-.+.++ ++ .++++|-.. .+..+++.
T Consensus 43 ~e~~~l~~l~~~~vdGiIl~~~~~~~~~~~~~~~~~l~~--~~iPvV~i~~~~~~~~~----~~V~~Dn~~-a~~~a~~~ 115 (273)
T cd01541 43 RERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEK--LGIPYVFINASYEELNF----PSLVLDDEK-GGYKATEY 115 (273)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHH--CCCCEEEEECCCCCCCC----CEEEECCHH-HHHHHHHH
T ss_conf 999999999965999899925310357877799999997--69989999567788999----889978599-99999999
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 998775166616999
Q gi|254780227|r 204 ISNERSATPRSLIIH 218 (426)
Q Consensus 204 l~~~A~s~~~~~~iV 218 (426)
+.. .. |+++.++
T Consensus 116 L~~--~G-~~~i~~i 127 (273)
T cd01541 116 LIE--LG-HRKIAGI 127 (273)
T ss_pred HHH--CC-CCCEEEE
T ss_conf 985--69-9608998
No 107
>KOG0571 consensus
Probab=59.94 E-value=11 Score=17.30 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=10.9
Q ss_pred EEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 89994882578999999999985
Q gi|254780227|r 141 ILHTIGGDDTNTTACDLLRYLKE 163 (426)
Q Consensus 141 ~Li~IGGdgS~~~a~~L~e~~~~ 163 (426)
+.+.-||=||--.|...+.+.++
T Consensus 229 GvLLSGGLDSSLvAsia~R~lk~ 251 (543)
T KOG0571 229 GVLLSGGLDSSLVASIAARELKK 251 (543)
T ss_pred EEEEECCCHHHHHHHHHHHHHHH
T ss_conf 58950773189999999999987
No 108
>PRK06186 hypothetical protein; Validated
Probab=59.76 E-value=12 Score=17.07 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=41.2
Q ss_pred CCCCEEEEECCHHH--HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 39988999488257--89999999999851899628852222347722211463356599999999999998775166--
Q gi|254780227|r 137 SGVTILHTIGGDDT--NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATP-- 212 (426)
Q Consensus 137 ~~Id~Li~IGGdgS--~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~-- 212 (426)
.++|++++.||.|. ..+...-.+|++++ +||.. -.|+|++.|+=..+.-+-.+ .+|.|+.
T Consensus 52 ~~~dgilv~pGfG~RG~eGki~Ai~yARen--~iP~L-------------GICLGmQ~avIEfARnvlgl-~dAnS~Efd 115 (229)
T PRK06186 52 AGFDGIWCVPGSPYRNEDGALTAIRFAREN--GIPFL-------------GTCGGFQHALLEYARNVLGW-ADAEHAETD 115 (229)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHC--CCCEE-------------EEHHHHHHHHHHHHHHHCCC-CCCCCCCCC
T ss_conf 259989989987776563899999999876--99878-------------64277899999999986599-888764557
Q ss_pred --CCEEEEEECC
Q ss_conf --6169999769
Q gi|254780227|r 213 --RSLIIHEVMG 222 (426)
Q Consensus 213 --~~~~iVEvMG 222 (426)
....++..|+
T Consensus 116 ~~~~~pvi~~l~ 127 (229)
T PRK06186 116 PEASRPVIAPLS 127 (229)
T ss_pred CCCCCEEEECCC
T ss_conf 899971893688
No 109
>pfam02401 LYTB LytB protein. The mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis is essential in many eubacteria, plants, and the malaria parasite. The LytB gene is involved in the trunk line of the MEP pathway.
Probab=59.70 E-value=12 Score=17.07 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=18.0
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 3687751489999999999998569978999
Q gi|254780227|r 36 TAGGIAPCLSSIIGMLINHYNKILPKAELIY 66 (426)
Q Consensus 36 tsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G 66 (426)
..-|=|.|...+|.-+-+++.. + +..+|-
T Consensus 5 ~~~GFC~GV~rAi~~a~~~~~~-~-~~~vy~ 33 (280)
T pfam02401 5 EPRGFCAGVKRAIQIAERALQK-S-GGPVYV 33 (280)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-C-CCCEEE
T ss_conf 7898681399999999999987-6-997798
No 110
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=59.14 E-value=13 Score=17.01 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=56.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN 110 (426)
Q Consensus 31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~ 110 (426)
||.|+-|||= =|+..+.+.+ .....++|.+.+ =.|.. .+ .++-
T Consensus 1 kILvIGsGgR---EHAi~~~l~~----s~~~~~l~~~pg-N~gi~-----~~-------------------~~~~----- 43 (99)
T pfam02844 1 KVLVVGSGGR---EHALAWKLAQ----SPRVEKVYVAPG-NPGTA-----QL-------------------AKNV----- 43 (99)
T ss_pred CEEEECCCHH---HHHHHHHHHC----CCCCCEEEEECC-CCHHH-----HH-------------------CEEE-----
T ss_conf 9899878879---9999999964----999776999589-81577-----74-------------------7501-----
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 30111012345674569999999986399889994882578999999999985189962885222
Q gi|254780227|r 111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPK 175 (426)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPK 175 (426)
..+..+++.+++-+++++|| |++||-..-+.. =|++++.++ +|+|+|=.|
T Consensus 44 ----------~i~~~d~~~i~~~~~~~~id-lviiGPE~pL~~--Gl~D~l~~~--gi~vfGP~k 93 (99)
T pfam02844 44 ----------NIDITDFEALADFAKEENID-LVVVGPEAPLVA--GIVDALRAA--GIPVFGPSK 93 (99)
T ss_pred ----------CCCCCCHHHHHHHHHHCCCC-EEEECCCHHHHH--HHHHHHHHC--CCEEECCCH
T ss_conf ----------45844799999999981974-999896067787--889999868--991799286
No 111
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=59.01 E-value=13 Score=16.99 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=53.2
Q ss_pred CEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC--CCCC-CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 7899983836601079913046269888874640787--4003-367888653011101234567456999999998639
Q gi|254780227|r 62 AELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG--SPIG-NSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSG 138 (426)
Q Consensus 62 ~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG--t~Lg-tsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (426)
-.-+=+-+|-.|- ....+...+..+.+..| .+.+ |+|.. +...++..+..+..+|
T Consensus 29 pd~isVT~gaggs-------~~~~t~~~a~~i~~~~gi~~i~Hltcr~~---------------n~~~l~~~L~~~~~~G 86 (274)
T cd00537 29 PDFVSVTDGAGGS-------TRDMTLLAAARILQEGGIEPIPHLTCRDR---------------NRIELQSILLGAHALG 86 (274)
T ss_pred CCEEEECCCCCCC-------CHHHHHHHHHHHHHHHCCCEEEEEECCCC---------------CHHHHHHHHHHHHHCC
T ss_conf 9989938898985-------62409999999999739982268601789---------------9999999999999859
Q ss_pred CCEEEEECCHH------------HHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 98899948825------------789999999999851899628852
Q gi|254780227|r 139 VTILHTIGGDD------------TNTTACDLLRYLKEKNYNITVVGL 173 (426)
Q Consensus 139 Id~Li~IGGdg------------S~~~a~~L~e~~~~~~~~i~vigi 173 (426)
|+.++++.||- ....+..|-++.+..+.+.-.||+
T Consensus 87 i~niLaLrGD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igv 133 (274)
T cd00537 87 IRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGV 133 (274)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECC
T ss_conf 86388735888877888888887746799999999997589850056
No 112
>KOG1184 consensus
Probab=57.21 E-value=14 Score=16.80 Aligned_cols=92 Identities=20% Similarity=0.164 Sum_probs=62.5
Q ss_pred HHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCCHH-------------------HHH
Q ss_conf 863998899948825789999999999851899628852222347722-211463356-------------------599
Q gi|254780227|r 135 MQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII-PIHQSLGAL-------------------TAA 194 (426)
Q Consensus 135 ~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~-~td~tiGfd-------------------TA~ 194 (426)
+.+||.++|+-=|-|-++.-+-++-...++-.=+-|+|+|-|=|++-. ...||+|-. +-.
T Consensus 63 R~~Gi~a~VtTfgVGeLSAlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~lLHHTLG~gDF~~f~rm~k~vsc~~a~I~~~ 142 (561)
T KOG1184 63 RSKGIGACVTTFGVGELSALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDI 142 (561)
T ss_pred HHCCCEEEEEEECCCHHHHHCCCCHHHHHCCCEEEEECCCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 53582189997021312331131033652488799977898540012302101137886168999987655677534487
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
Q ss_conf 9999999999987751666169999769874289
Q gi|254780227|r 195 QVSACFFDNISNERSATPRSLIIHEVMGRNCGWL 228 (426)
Q Consensus 195 ~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~L 228 (426)
+.+.+.||+.-.+|-..+|.+++ ++ =-+.+++
T Consensus 143 e~A~~~ID~aI~~~~~~~kPVYi-~v-P~n~~~~ 174 (561)
T KOG1184 143 EDAPEQIDKAIRTALKESKPVYI-GV-PANLADL 174 (561)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEE-EC-CCCCCCC
T ss_conf 67699999999999874498599-82-1430357
No 113
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=56.87 E-value=14 Score=16.76 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=59.9
Q ss_pred HCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCC-------------------HHHHHH
Q ss_conf 63998899948825789999999999851899628852222347722-2114633-------------------565999
Q gi|254780227|r 136 QSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII-PIHQSLG-------------------ALTAAQ 195 (426)
Q Consensus 136 ~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~-~td~tiG-------------------fdTA~~ 195 (426)
-+||.+|+.-=|-|-++..+-++--..++-.=+-|+|+|-|=+..-. ...||+| +-|..+
T Consensus 64 ~~Gi~alvTTfGVGELSA~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~ 143 (557)
T COG3961 64 LNGISALVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDIN 143 (557)
T ss_pred HCCCEEEEEECCCCHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHCCCHHEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 44841899950330455430300345640877999758982421225111432268862899997566566766437710
Q ss_pred HHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999999999877516661699
Q gi|254780227|r 196 VSACFFDNISNERSATPRSLII 217 (426)
Q Consensus 196 ~~a~~i~~l~~~A~s~~~~~~i 217 (426)
.+...||++-.++...+|.+++
T Consensus 144 ~A~~eIDrvi~~~~~~~RPvYI 165 (557)
T COG3961 144 TAPREIDRVIRTALKQRRPVYI 165 (557)
T ss_pred HHHHHHHHHHHHHHHHCCCEEE
T ss_conf 1179999999999975498489
No 114
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=56.57 E-value=14 Score=16.73 Aligned_cols=58 Identities=21% Similarity=0.152 Sum_probs=27.1
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC-CCHHHHHHHHHHHHHH
Q ss_conf 9889994882578999999999985189962885222234772221146-3356599999999999
Q gi|254780227|r 139 VTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS-LGALTAAQVSACFFDN 203 (426)
Q Consensus 139 Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t-iGfdTA~~~~a~~i~~ 203 (426)
-|.|+++ |...-...+.|. ++.+||||++--| |+|-.++|+- ||=|-|.+-++-...-
T Consensus 157 Pd~l~Vi---Dp~~e~iAv~EA---~klgIPVvAlvDT-n~dpd~VD~~IP~Ndda~rsi~Li~~~ 215 (252)
T COG0052 157 PDVLFVI---DPRKEKIAVKEA---NKLGIPVVALVDT-NCDPDGVDYVIPGNDDAIRSIALIYWL 215 (252)
T ss_pred CCEEEEE---CCCHHHHHHHHH---HHCCCCEEEEECC-CCCCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf 9989996---881768999999---9759998998418-999765765522887089899999999
No 115
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.54 E-value=14 Score=16.73 Aligned_cols=127 Identities=10% Similarity=0.032 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 45699999999863998899948825789999999999851899628852222347722211463356599999999999
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDN 203 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~ 203 (426)
++.....++.+.++++|++|+.+....-.....|.+ .++|+|.+=... ++.+ ++..|-.- .+..+++.
T Consensus 41 ~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~------~~iPvV~~~~~~-~~~~----~v~~dn~~-~~~~~~~~ 108 (265)
T cd06285 41 PDAQRRAIEMLLDRRVDGLILGDARSDDHFLDELTR------RGVPFVLVLRHA-GTSP----AVTGDDVL-GGRLATRH 108 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH------CCCCEEEECCCC-CCCC----EEEECHHH-HHHHHHHH
T ss_conf 899999999999569999997688799899999996------799789985568-9999----79877799-99999999
Q ss_pred HHHHHHHCCCCEEEEEECC-------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9987751666169999769-------874289999874014332310111111100014576523287865598999999
Q gi|254780227|r 204 ISNERSATPRSLIIHEVMG-------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIER 276 (426)
Q Consensus 204 l~~~A~s~~~~~~iVEvMG-------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~ 276 (426)
+. + .. |+++.++--.. |..||....... +......++.+..++.+...+.
T Consensus 109 Li-~-~G-~~~i~~l~~~~~~~~~~~R~~Gf~~a~~~~--------------------~~~~~~~~i~~~~~~~~~~~~~ 165 (265)
T cd06285 109 LL-D-LG-HRRIAVLAGPDYASTARDRLAGFRAALAEA--------------------GIEVPPERIVYSGFDIEGGEAA 165 (265)
T ss_pred HH-H-HC-CCCEEECCCCCCCCHHHHHHHHHHHHHHHC--------------------CCCCCHHHEECCCCCHHHHHHH
T ss_conf 99-8-38-865875478877705999999999999986--------------------9998756601366215569999
Q ss_pred HHHHHHCCC
Q ss_conf 999850289
Q gi|254780227|r 277 LSKVMEKKG 285 (426)
Q Consensus 277 i~~~~~~~~ 285 (426)
+++.+....
T Consensus 166 ~~~~l~~~~ 174 (265)
T cd06285 166 AEKLLRSDS 174 (265)
T ss_pred HHHHHHCCC
T ss_conf 999985699
No 116
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=56.40 E-value=14 Score=16.71 Aligned_cols=128 Identities=14% Similarity=-0.010 Sum_probs=75.7
Q ss_pred HHHHHHHHHHCCHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCH
Q ss_conf 86899998733212103487633799983687751489999999999998569978999838366010799130462698
Q gi|254780227|r 8 ISNLDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMR 87 (426)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~ 87 (426)
.+...+|.-+|...- ++.+--|||++|..|--=.|.-+.-+.+.++.--...-.+.+..+.-++-++
T Consensus 24 ~~~r~l~~a~G~~~~---~~~kP~IgI~~s~~d~~p~h~hl~~l~~~vk~~i~~aGg~p~ef~t~~v~DG---------- 90 (575)
T COG0129 24 AGHRSLLRATGLTDE---DFGKPIIGIANSYNDMVPGHQHLKDLAQLVKEGIREAGGVPVEFGTIAVCDG---------- 90 (575)
T ss_pred CCHHHHHHHHCCCHH---HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC----------
T ss_conf 105899988299957---8299869998134667672063999999999999983994167278866572----------
Q ss_pred HHHHHHHHCCCCCCC--CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCC
Q ss_conf 888746407874003--367888653011101234567456999999998639988999488257899999999998518
Q gi|254780227|r 88 QNAEQLLSYGGSPIG--NSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKN 165 (426)
Q Consensus 88 ~~v~~~~~~GGt~Lg--tsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~ 165 (426)
+.+.-.-+.- -|| +--...+...+..+-+|++|+|||=|-..=+..++.. .
T Consensus 91 -----iamG~~GM~~SL~SR------------------elIAds~e~~~~~~~~Da~V~i~~CDKi~PG~lmaa~----r 143 (575)
T COG0129 91 -----IAMGHDGMPYSLPSR------------------ELIADSVEEVLSAHPFDGVVLIGGCDKITPGMLMAAA----R 143 (575)
T ss_pred -----CCCCCCCCCCCCCCH------------------HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH----H
T ss_conf -----014889861431159------------------9999999999735775548984678875489999998----6
Q ss_pred CCCEEEEECC
Q ss_conf 9962885222
Q gi|254780227|r 166 YNITVVGLPK 175 (426)
Q Consensus 166 ~~i~vigiPK 175 (426)
.+||.|-||.
T Consensus 144 ~niPaIfv~g 153 (575)
T COG0129 144 LNIPAIFVSG 153 (575)
T ss_pred CCCCEEEECC
T ss_conf 5998799537
No 117
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.07 E-value=14 Score=16.68 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCCCEEEEECCCCCCC-CCCCCCCCCHH--HHHHHHHH
Q ss_conf 4569999999986399889994882578-99999999998518996288522223477-22211463356--59999999
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTN-TTACDLLRYLKEKNYNITVVGLPKTIDND-IIPIHQSLGAL--TAAQVSAC 199 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~-~~a~~L~e~~~~~~~~i~vigiPKTIDND-i~~td~tiGfd--TA~~~~a~ 199 (426)
.+.....++.+.++++|++|+.|=.++. .....+. ..++|||.+-...+++ ++ +++.| .|...++
T Consensus 41 ~~~e~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~l~------~~~iPvV~i~~~~~~~~~~----~V~~d~~~~~~~a~- 109 (268)
T cd06289 41 VERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLA------ESGIPVVLVAREVAGAPFD----YVGPDNAAGARLAT- 109 (268)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH------HCCCCEEEECCCCCCCCCC----EEEECHHHHHHHHH-
T ss_conf 899999999999659998999468889999999999------7599899836767999987----89977799999999-
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999987751666169999769874289999874014332310111111100014576523287865598999999999
Q gi|254780227|r 200 FFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSK 279 (426)
Q Consensus 200 ~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~ 279 (426)
+.+. + ..+ +++.++ .|...-..+. --.. | ....-...+...+..++.+.+++.+.-.+.+++
T Consensus 110 --~~L~-~-~G~-~~i~~i--~~~~~~~~~~-~R~~-G---------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (268)
T cd06289 110 --EHLI-S-LGH-RRIAFI--GGLEDSSTRR-ERLA-G---------YRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQ 171 (268)
T ss_pred --HHHH-H-HCC-CEEEEE--CCCCCCCHHH-HHHH-H---------HHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf --9999-7-398-709995--2898870699-9999-9---------999999769986643453168865569999999
Q ss_pred HHHCCCCEEEEE
Q ss_conf 850289538995
Q gi|254780227|r 280 VMEKKGSVAIFV 291 (426)
Q Consensus 280 ~~~~~~~~vIVv 291 (426)
.++.+...-.++
T Consensus 172 ~l~~~~~~~aii 183 (268)
T cd06289 172 LLDLPPRPTAIV 183 (268)
T ss_pred HHHCCCCCCEEC
T ss_conf 984699986203
No 118
>KOG4435 consensus
Probab=56.00 E-value=14 Score=16.67 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 745699999999863998899948825789999999999851899628852222347
Q gi|254780227|r 123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDN 179 (426)
Q Consensus 123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDN 179 (426)
++.+.+..++-+.... |.+++.|||||....- .-.++.++-..+|=-+|.--||
T Consensus 102 ~~gqak~l~e~~~t~~-Dii~VaGGDGT~~eVV--TGi~Rrr~~~~pv~~~P~G~~~ 155 (535)
T KOG4435 102 NQGQAKALAEAVDTQE-DIIYVAGGDGTIGEVV--TGIFRRRKAQLPVGFYPGGYDN 155 (535)
T ss_pred CHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHH--HHHHHCCCCCCCEEECCCCCCH
T ss_conf 3778999999861677-7699956887277765--7887545665854543576454
No 119
>PRK12361 hypothetical protein; Provisional
Probab=55.91 E-value=14 Score=16.66 Aligned_cols=49 Identities=29% Similarity=0.401 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHH-HHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 9999999863998899948825789999-999999851899628852222347722
Q gi|254780227|r 128 EVSAHHLMQSGVTILHTIGGDDTNTTAC-DLLRYLKEKNYNITVVGLPKTIDNDII 182 (426)
Q Consensus 128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~-~L~e~~~~~~~~i~vigiPKTIDNDi~ 182 (426)
+..++.-.+.|.|-+|+.|||||.+.+. .|. +.+++.=-||-==-||+.
T Consensus 286 ~~LArqAv~~GaDlVVAaGGDGTVneVA~aLv------gTdv~LGIIPlGTaN~lA 335 (546)
T PRK12361 286 NTLAKQARKAGADIIIACGGDGTVTEVASELV------NTDITLGIIPLGTANALS 335 (546)
T ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC------CCCCCEEEECCCCHHHHH
T ss_conf 99999999749999999888529999999971------899824996177557889
No 120
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=55.87 E-value=10 Score=17.61 Aligned_cols=49 Identities=8% Similarity=0.092 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 745699999999863998899948825789999999999851899628852
Q gi|254780227|r 123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL 173 (426)
Q Consensus 123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi 173 (426)
++++.+++++++++.+=|-.|+|+=|+..-+-..-.|.+++. ++|+|.|
T Consensus 44 ~pe~~~~v~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~--~iP~IvI 92 (276)
T PRK00994 44 GPEEVERVVKKMKEWKPDFIIVISPNPAAPGPTKAREILSAA--GIPCIVI 92 (276)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHC--CCCEEEE
T ss_conf 978999999998840899899978998899956799999756--9988997
No 121
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=55.75 E-value=12 Score=17.27 Aligned_cols=65 Identities=18% Similarity=0.062 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECC----CCCCCCCCCCCCCCHHH
Q ss_conf 74569999999986399889994882578999999999985189962885222----23477222114633565
Q gi|254780227|r 123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPK----TIDNDIIPIHQSLGALT 192 (426)
Q Consensus 123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPK----TIDNDi~~td~tiGfdT 192 (426)
.++.++++++.|.+-+ .-+|++|+.-....+......+.+ ..++||+.-|. .+++|-| ...|+..
T Consensus 183 ~~~~l~~~~~~L~~Ak-rPvii~G~g~~~~~a~~~l~~lae-~l~~PV~~t~~~gk~~~~~~hp---~~~G~~~ 251 (521)
T PRK07092 183 DPAALAALGDALDAAR-NPALVVGPAVDRAGAWDDAVRLAE-RHRAPVWVAPMSGRCSFPERHP---LFAGFLP 251 (521)
T ss_pred CHHHHHHHHHHHHCCC-CCEEEECCCCCCCCHHHHHHHHHH-HHCCCEEEECCCCCCCCCCCCC---CCCCCCC
T ss_conf 9999999999997289-978998767040354999999999-8699778732766424689986---4324254
No 122
>COG3395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.16 E-value=14 Score=16.85 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999999999999997799866999
Q gi|254780227|r 363 SLIKKMVVLAVDSAISGISGVTGE 386 (426)
Q Consensus 363 ~~a~~lG~~Av~~~~~G~sgvmv~ 386 (426)
.....|+..|.+++..|.++..++
T Consensus 330 ~v~~~l~~la~~l~~~~v~~liva 353 (413)
T COG3395 330 AVEALLGDLARRLVARGVRRLIVA 353 (413)
T ss_pred HHHHHHHHHHHHHHHHHHCEEEEC
T ss_conf 999999999999988542058860
No 123
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=55.14 E-value=15 Score=16.58 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=24.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 3799983687751489999999999998569978999
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIY 66 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G 66 (426)
++|-+-.+-|=|.|...+|.-+-+++... +..+|-
T Consensus 1 MkI~lA~~~GFC~GV~rAi~~a~~~~~~~--~~~iyt 35 (304)
T PRK01045 1 MKILLANPRGFCAGVDRAIEIVERALEKY--GAPIYV 35 (304)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEE
T ss_conf 97999378986825999999999999854--996898
No 124
>TIGR01980 sufB FeS assembly protein SufB; InterPro: IPR010231 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufB, which is part of the SUF system and forms a complex with SufBCD.; GO: 0005515 protein binding, 0016226 iron-sulfur cluster assembly.
Probab=53.82 E-value=5.3 Score=19.48 Aligned_cols=124 Identities=12% Similarity=-0.004 Sum_probs=74.1
Q ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEE------EEECCCCCCCCC--CCCCCCCHHHHHHHHHH
Q ss_conf 9999999863998899948825789999999999851899628------852222347722--21146335659999999
Q gi|254780227|r 128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITV------VGLPKTIDNDII--PIHQSLGALTAAQVSAC 199 (426)
Q Consensus 128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~v------igiPKTIDNDi~--~td~tiGfdTA~~~~a~ 199 (426)
+.|.++++||||=- +|- +.=.++.| ..|=-||--||. |+=+| =+|||++.+=+
T Consensus 100 ~eIk~TFEkLGIPe----------------aE~--k~LaGvav~AQYdSEviY~~~Ke~L~~~GVIF~-d~d~Al~~YPd 160 (469)
T TIGR01980 100 DEIKDTFEKLGIPE----------------AER--KALAGVAVGAQYDSEVIYHNIKEDLEEKGVIFC-DMDTALKEYPD 160 (469)
T ss_pred HHHHHHHHHCCCCH----------------HHH--HHHCCCEEEEEEEEEEEECCCHHHHHHCCEEEC-CHHHHHHHCHH
T ss_conf 89998764448617----------------999--874253577886204462220467562987863-85998651725
Q ss_pred HHHHHHHHH-HHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-
Q ss_conf 999999877-516661699997698742899998740143323101111111000145765232878655989999999-
Q gi|254780227|r 200 FFDNISNER-SATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERL- 277 (426)
Q Consensus 200 ~i~~l~~~A-~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i- 277 (426)
.|.+-.-+. ..-...- |-||++|..||=. +||+|+..--..+|..+.
T Consensus 161 LVKeYF~~v~VPp~DnK-----------FAALn~AVWSGGs--------------------FvYVPkGV~v~~PLqtYFR 209 (469)
T TIGR01980 161 LVKEYFGKVCVPPSDNK-----------FAALNGAVWSGGS--------------------FVYVPKGVRVDMPLQTYFR 209 (469)
T ss_pred HHHHHCCCCCCCCCCCH-----------HHHHHHHEEECCE--------------------EEEECCCCEECCCCCCCEE
T ss_conf 67866270025876341-----------4664021102785--------------------7984789866663000000
Q ss_pred -HHHHH-CCCCEEEEEECCCCCCCCH
Q ss_conf -99850-2895389950421111110
Q gi|254780227|r 278 -SKVME-KKGSVAIFVSEGACRDVIM 301 (426)
Q Consensus 278 -~~~~~-~~~~~vIVvsEG~~~~~~~ 301 (426)
..... .--|.+||+=||+...++.
T Consensus 210 IN~~~~GQFErTLiIadeGa~VhYiE 235 (469)
T TIGR01980 210 INSENTGQFERTLIIADEGASVHYIE 235 (469)
T ss_pred CCCCCCCCCEEEEEEEEECCEEEEEE
T ss_conf 28477886325889995177488870
No 125
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=53.02 E-value=16 Score=16.37 Aligned_cols=129 Identities=15% Similarity=0.114 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 569999999986399889994882578999999999985189962885222-2347722211463356599999999999
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPK-TIDNDIIPIHQSLGALTAAQVSACFFDN 203 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPK-TIDNDi~~td~tiGfdTA~~~~a~~i~~ 203 (426)
+.....++.+.+.++|++|++++..+-.....+.+. .++|+|.+-- ..+.+. ++ ++. +-...-...+++.
T Consensus 102 ~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~l~~~-----~~iP~V~id~~~~~~~~--~~-~v~-~~~~~~~~~a~~~ 172 (335)
T PRK10703 102 EKQRAYLSMLAQKRVDGLLVMCSEYPEPLLSMLEEY-----RHIPMVVMDWGEAKADF--TD-AII-DNAFEGGYLAGRY 172 (335)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH-----CCCCEEEEECCCCCCCC--CC-EEE-CCHHHHHHHHHHH
T ss_conf 999999999995588779997688997999999970-----89988999477777888--95-997-4879999999999
Q ss_pred HHHHHHHCCCCEEEEEE-------CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99877516661699997-------69874289999874014332310111111100014576523287865598999999
Q gi|254780227|r 204 ISNERSATPRSLIIHEV-------MGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIER 276 (426)
Q Consensus 204 l~~~A~s~~~~~~iVEv-------MGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~ 276 (426)
|. + .. |+++.++-- -.|..||....... +-..+-.++-+..++.+.-.+.
T Consensus 173 L~-~-~G-hr~Ia~i~~~~~~~~~~~R~~gf~~al~~~--------------------gl~~~~~~i~~~~~~~~~g~~~ 229 (335)
T PRK10703 173 LI-E-RG-HRDIGVIPGPLERNTGAGRLAGFMKAMEEA--------------------NIKVPEEWIVQGDFEPESGYEA 229 (335)
T ss_pred HH-H-CC-CCEEEEEECCCCCCHHHHHHHHHHHHHHHC--------------------CCCCCHHEEEECCCCHHHHHHH
T ss_conf 99-7-59-986999958876521789999999999985--------------------9998813289657885889999
Q ss_pred HHHHHHCCC
Q ss_conf 999850289
Q gi|254780227|r 277 LSKVMEKKG 285 (426)
Q Consensus 277 i~~~~~~~~ 285 (426)
+++.+....
T Consensus 230 ~~~ll~~~~ 238 (335)
T PRK10703 230 MQQILSQEH 238 (335)
T ss_pred HHHHHHCCC
T ss_conf 999995699
No 126
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=52.08 E-value=13 Score=17.01 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 74569999999986399-88999488257899999999998518996288522223477222114633565999999999
Q gi|254780227|r 123 DENPLEVSAHHLMQSGV-TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFF 201 (426)
Q Consensus 123 ~~~~~~~~~~~l~~~~I-d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i 201 (426)
.++.+...+++.++.|+ ..+|.+=|. |+-|.=... -.-.+||||||---.+ +.|.|
T Consensus 38 TP~~~~~ya~~a~~~G~P~ViIAgAGg-----aAHLPGmvA-a~T~~PVIGVPv~~~~-l~G~D---------------- 94 (159)
T TIGR01162 38 TPELMFEYAKEAEERGIPKVIIAGAGG-----AAHLPGMVA-ALTTLPVIGVPVPSKA-LSGLD---------------- 94 (159)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCC-----CCCCCCCCC-CCCCCCEEECCCCCCC-CCCHH----------------
T ss_conf 808899999999867899799840351-----133401001-1478775503477342-45213----------------
Q ss_pred HHHHHHHHHCCCCEEEEEECC
Q ss_conf 999987751666169999769
Q gi|254780227|r 202 DNISNERSATPRSLIIHEVMG 222 (426)
Q Consensus 202 ~~l~~~A~s~~~~~~iVEvMG 222 (426)
.|.+.. .+|..+=+ =||+
T Consensus 95 -SLlSiV-QMP~GvPV-ATva 112 (159)
T TIGR01162 95 -SLLSIV-QMPAGVPV-ATVA 112 (159)
T ss_pred -HHHHHH-HCCCCCCE-EEEE
T ss_conf -544543-07589746-5300
No 127
>pfam09001 DUF1890 Domain of unknown function (DUF1890). This domain is found in a set of hypothetical archaeal proteins.
Probab=52.07 E-value=17 Score=16.27 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=51.1
Q ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCC--CCCCCCCH---HHHHHHHHHHHHH
Q ss_conf 9999986399889994882578999999999985189962-8852222347722--21146335---6599999999999
Q gi|254780227|r 130 SAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNIT-VVGLPKTIDNDII--PIHQSLGA---LTAAQVSACFFDN 203 (426)
Q Consensus 130 ~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~-vigiPKTIDNDi~--~td~tiGf---dTA~~~~a~~i~~ 203 (426)
....|++.|++.+|. | ...|.+|.+.....++=+. ++-+-++|.+ +. ..|.+||| |+++++++.+=
T Consensus 19 l~~~Lk~~G~~v~Va--~---npAA~kLl~vaDpe~~Ylk~~~dld~~l~~-i~e~~~d~~~~FvHNDagvsYa~T~~-- 90 (138)
T pfam09001 19 LSNKLKDKGFRVVVA--A---NPAALKLLEVADPEKYYLKEVVDLDKGIAD-IAEGDFDLIFGFVHNDAGVSYAVTMK-- 90 (138)
T ss_pred HHHHHHHCCCCEEEE--C---CHHHHHHHHHCCCCCCHHCCEEEHHHHHHH-HHCCCCCEEEEEEECCCHHHHHHHHH--
T ss_conf 999987669606996--6---988873612118764001043559998745-52068887999973562266789888--
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCHHHHH
Q ss_conf 9987751666169999769874289999
Q gi|254780227|r 204 ISNERSATPRSLIIHEVMGRNCGWLTAY 231 (426)
Q Consensus 204 l~~~A~s~~~~~~iVEvMGR~aG~LAl~ 231 (426)
+. +. .=.+.=++||++..|+-.
T Consensus 91 ----~i-~~-~~~~aiVFg~~~e~la~~ 112 (138)
T pfam09001 91 ----AV-SN-AKTYAIVFGEHAEELAET 112 (138)
T ss_pred ----HH-CC-CCEEEEEECCCHHHHHHH
T ss_conf ----75-47-865899935887999998
No 128
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=52.04 E-value=17 Score=16.27 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=33.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 379998368775148999999999999856997899983836601079913046269888874640787400
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPI 101 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~L 101 (426)
++|-+-..-|=|.|..-+|.-+.+.+.. +.+..||-. -=|+.| ++.+..+...|=..+
T Consensus 1 MkI~lA~~~GFC~GV~rAi~~a~~~~~~-~~~~~vy~l----G~iVHN---------~~vv~~L~~~Gv~~v 58 (281)
T PRK12360 1 MNILIAKNAGFCFGVKRAIDTAYKEIEK-NDKKKIYTL----GPLIHN---------NQVVSDLEEKGVKVI 58 (281)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEE----CCCCCC---------HHHHHHHHHCCCEEE
T ss_conf 9799947998681499999999999997-699968983----777679---------899999997799798
No 129
>pfam00731 AIRC AIR carboxylase. Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.
Probab=51.84 E-value=17 Score=16.25 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECC-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7456999999998639988999488-257899999999998518996288522223477222114633565999999999
Q gi|254780227|r 123 DENPLEVSAHHLMQSGVTILHTIGG-DDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFF 201 (426)
Q Consensus 123 ~~~~~~~~~~~l~~~~Id~Li~IGG-dgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i 201 (426)
.++.+...+++.++.+++.+|.+-| ...+.+. ++- .-.+||||||-.- ++--|+|
T Consensus 40 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpGv--vA~-----~T~~PVIgVP~~~-------~~l~G~d---------- 95 (150)
T pfam00731 40 TPERLFEYAKEAEARGIKVIIAGAGGAAHLPGM--VAA-----LTTLPVIGVPVKS-------KALGGLD---------- 95 (150)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH--HHH-----HCCCCEEECCCCC-------CCCCCHH----------
T ss_conf 878999999999975973999956842012000--176-----4799668577787-------7775454----------
Q ss_pred HHHHHHHHHCCCCEEEEEECC----CCCCHHHHH
Q ss_conf 999987751666169999769----874289999
Q gi|254780227|r 202 DNISNERSATPRSLIIHEVMG----RNCGWLTAY 231 (426)
Q Consensus 202 ~~l~~~A~s~~~~~~iVEvMG----R~aG~LAl~ 231 (426)
.|.++. .++..+-+ =+|| ++|+++|..
T Consensus 96 -sllS~v-qMP~Gvpv-atv~i~~~~NAallA~~ 126 (150)
T pfam00731 96 -SLLSIV-QMPSGIPV-ATVAIGGAKNAALLAAQ 126 (150)
T ss_pred -HHHHHH-CCCCCCCE-EEEECCCHHHHHHHHHH
T ss_conf -599996-19999976-89865866669999999
No 130
>PRK08639 threonine dehydratase; Validated
Probab=51.44 E-value=17 Score=16.21 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=31.5
Q ss_pred HHHHHHHHC--CCCEEEE-ECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 999999863--9988999-48825789999999999851899628852222
Q gi|254780227|r 129 VSAHHLMQS--GVTILHT-IGGDDTNTTACDLLRYLKEKNYNITVVGLPKT 176 (426)
Q Consensus 129 ~~~~~l~~~--~Id~Li~-IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT 176 (426)
...+-+++. .+|++++ +||.|...+... +++..+.++.||||=-.
T Consensus 166 iglEI~eq~~~~~D~vvvpvGGGGLiaGia~---~lK~~~P~ikIiGVEp~ 213 (418)
T PRK08639 166 VAVEILEQLEEEPDYVFVPVGGGGLISGVTT---YLKEVSPKTKVIGVEPA 213 (418)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCHHHHHHHH---HHHHHCCCCEEEEEEEC
T ss_conf 9999998568878889996187368999999---99850999718998158
No 131
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=51.39 E-value=17 Score=16.20 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=40.4
Q ss_pred HHHHHHHHHHCCCCE-EEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 999999998639988-99948825789999999999851899628852222
Q gi|254780227|r 127 LEVSAHHLMQSGVTI-LHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKT 176 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~-Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT 176 (426)
.+.+.+.+++-++|+ |-.+||.+.+..+..|.+...-..++++++|-+.+
T Consensus 59 ~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~e 109 (400)
T COG0458 59 KEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPE 109 (400)
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCHHHCCCEEEECCHH
T ss_conf 788999997537662632468741346889987726456449779945878
No 132
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=51.14 E-value=17 Score=16.18 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=37.6
Q ss_pred CCCCEEEEECCHHHHHH--HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 39988999488257899--999999998518996288522223477222114633565999999999999987751
Q gi|254780227|r 137 SGVTILHTIGGDDTNTT--ACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210 (426)
Q Consensus 137 ~~Id~Li~IGGdgS~~~--a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s 210 (426)
.+.|++++-||.|.--. ...-.+|++++ +||..| .|+||+.|+=..|.-+-.+ .+|.|
T Consensus 54 ~~~dgilvpgGFG~rG~eGki~Ai~yARen--~iPfLG-------------IClGmQ~aviE~ARnvlg~-~~A~s 113 (235)
T cd01746 54 KGADGILVPGGFGIRGVEGKILAIKYAREN--NIPFLG-------------ICLGMQLAVIEFARNVLGL-PDANS 113 (235)
T ss_pred HCCCCEEECCCCCCCCHHHHHHHHHHHHHC--CCCEEE-------------EECCCCHHHHHHHHHHCCC-CCCCC
T ss_conf 306978957888877645889999999973--997254-------------4103432268999875299-77674
No 133
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=50.94 E-value=17 Score=16.16 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf 5699999999863-998899948825789999999999851
Q gi|254780227|r 125 NPLEVSAHHLMQS-GVTILHTIGGDDTNTTACDLLRYLKEK 164 (426)
Q Consensus 125 ~~~~~~~~~l~~~-~Id~Li~IGGdgS~~~a~~L~e~~~~~ 164 (426)
+.++..++.+++. +++.+|+||=.||.-++..+.+.+...
T Consensus 5 ~~i~~f~~~i~~g~~~~~iv~iGiGGS~LG~k~l~~al~~~ 45 (158)
T cd05015 5 ERIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPY 45 (158)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 99999999997599888699981433389999999997624
No 134
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=49.80 E-value=18 Score=16.04 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHCCHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCC
Q ss_conf 88868999987332121034876337999836877514899999999999985699789998383660107991304626
Q gi|254780227|r 6 SYISNLDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITED 85 (426)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l 85 (426)
.|+|++=--+|...-.. ... -.+|-.--+=|=|-|...||.-+.+++. .+++-.+|-.. =++.
T Consensus 24 ~y~s~~i~~~~~~~~~~-~~g--~~~i~LA~~~GFC~GVeRAI~ia~ea~~-~~p~~~Iy~~g----eIIH--------- 86 (392)
T PRK13371 24 AYQSSLIQSIRDNGYVL-QRG--DVTIKLAEAFGFCWGVERAVAMAYETRR-HFPDERIWITN----EIIH--------- 86 (392)
T ss_pred HHHHHHHHHHHHCCCEE-EEC--CEEEEEHHHCCCCCCHHHHHHHHHHHHH-HCCCCCEEEEC----CCCC---------
T ss_conf 88789999999749767-557--7799966546875358999999999998-68999789717----8746---------
Q ss_pred CHHHHHHHHHCCCCCCCC
Q ss_conf 988887464078740033
Q gi|254780227|r 86 MRQNAEQLLSYGGSPIGN 103 (426)
Q Consensus 86 ~~~~v~~~~~~GGt~Lgt 103 (426)
++..++.+...|=.++-.
T Consensus 87 Np~Vv~~L~~~Gv~~i~~ 104 (392)
T PRK13371 87 NPSVNQHLREMGVKFIPV 104 (392)
T ss_pred CHHHHHHHHHCCCEEEEC
T ss_conf 979999999779999624
No 135
>KOG3125 consensus
Probab=49.63 E-value=18 Score=16.03 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECC--CCC-CHHHHHHHHHCCCCCCC-HHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99999999987751666169999769--874-28999987401433231-011111110001457652328786559899
Q gi|254780227|r 197 SACFFDNISNERSATPRSLIIHEVMG--RNC-GWLTAYSAHCYLNMIQD-RNYIDGFIFSPDFKGIDGVYLPEMSFNLEV 272 (426)
Q Consensus 197 ~a~~i~~l~~~A~s~~~~~~iVEvMG--R~a-G~LAl~~ala~ga~~~~-i~~~~~~~~~~~~~~~d~iliPE~~~~~~~ 272 (426)
-++++++++..+ ...+++.+++--+ |++ .-++.++++-.-...+- -++..+...+...+..|++.|-|..|- .+
T Consensus 41 Tt~LLrr~r~~~-~~grrv~liK~~kDTRy~~~si~Thdg~~~~c~~lp~a~~~s~f~~d~~~~~vdVigIDEaQFf-~d 118 (234)
T KOG3125 41 TTELLRRIRREI-IAGRRVLLIKYAKDTRYESSSIVTHDGIEMPCWALPDASFLSEFGKDALNGDVDVIGIDEAQFF-GD 118 (234)
T ss_pred HHHHHHHHHHHH-HCCCEEEEEEECCCCCCCHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECHHHHH-HH
T ss_conf 689999999987-5185699997567752111105732587564011678436778778875583109984278874-89
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999850289538995
Q gi|254780227|r 273 EIERLSKVMEKKGSVAIFV 291 (426)
Q Consensus 273 ~~~~i~~~~~~~~~~vIVv 291 (426)
+.+..++..+.+|..|||-
T Consensus 119 l~efc~evAd~~Gk~Viva 137 (234)
T KOG3125 119 LYEFCREVADVHGKTVIVA 137 (234)
T ss_pred HHHHHHHHHHCCCCEEEEE
T ss_conf 9999999874149789999
No 136
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=49.15 E-value=18 Score=15.98 Aligned_cols=24 Identities=13% Similarity=-0.251 Sum_probs=14.3
Q ss_pred EECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 976987428999987401433231
Q gi|254780227|r 219 EVMGRNCGWLTAYSAHCYLNMIQD 242 (426)
Q Consensus 219 EvMGR~aG~LAl~~ala~ga~~~~ 242 (426)
=.||...---++.-+||-|||.++
T Consensus 58 lsvGp~~a~~~Lr~alAmGaD~ai 81 (202)
T cd01714 58 VSMGPPQAEEALREALAMGADRAI 81 (202)
T ss_pred EEECCHHHHHHHHHHHHHCCCEEE
T ss_conf 993747889999999970898359
No 137
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=49.09 E-value=18 Score=15.97 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=66.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCCCCCCC
Q ss_conf 379998368775148999999999999856997899983836601079913046269888874640787-4003367888
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGNSRVKL 108 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~LgtsR~~~ 108 (426)
+||+|.+ |.++| +..-.++++.++..+++.+.+|+- | +.+-......+ -+.+.+.-+|. -.|+.=.
T Consensus 2 ~ki~i~A--GE~SG-DllGa~LikaLk~~~~~~efvGvg-G-~~m~aeG~~sl-----~~~~elsvmGf~EVL~~lp--- 68 (381)
T COG0763 2 LKIALSA--GEASG-DLLGAGLIKALKARYPDVEFVGVG-G-EKMEAEGLESL-----FDMEELSVMGFVEVLGRLP--- 68 (381)
T ss_pred CEEEEEE--CCCCH-HHHHHHHHHHHHHHCCCEEEEEEC-C-HHHHHCCCCCC-----CCHHHHHHHHHHHHHHHHH---
T ss_conf 4599990--44431-146899999998638983899817-6-78886557655-----5889987822999999889---
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 65301110123456745699999999863998899948825789999999999851899628852
Q gi|254780227|r 109 TNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL 173 (426)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi 173 (426)
.--......++++.+.+.|.+|.| ||..--..++..+++.+..+++|+-
T Consensus 69 -------------~llk~~~~~~~~i~~~kpD~~i~I---DsPdFnl~vak~lrk~~p~i~iihY 117 (381)
T COG0763 69 -------------RLLKIRRELVRYILANKPDVLILI---DSPDFNLRVAKKLRKAGPKIKIIHY 117 (381)
T ss_pred -------------HHHHHHHHHHHHHHHCCCCEEEEE---CCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf -------------999999999999985599889996---7898864999999970899986999
No 138
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=48.37 E-value=19 Score=15.90 Aligned_cols=75 Identities=8% Similarity=0.017 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998639988999488257899999999998518996288522223477222114633565999999999999987
Q gi|254780227|r 128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNE 207 (426)
Q Consensus 128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~ 207 (426)
...++.+...++|++|+...+.... + .. ..++|+|.+-.....+++ +++.|-. .....+++.+..
T Consensus 45 ~~~l~~l~~~~vDGiI~~~~~~~~~------~-~~--~~~iPvV~~d~~~~~~~~----~V~~Dn~-~~~~~a~~~L~~- 109 (265)
T cd06291 45 REYLEMLRQNQVDGIIAGTHNLGIE------E-YE--NIDLPIVSFDRYLSENIP----IVSSDNY-EGGRLAAEELIE- 109 (265)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHH------H-HH--HCCCCEEEEECCCCCCCC----EEEECHH-HHHHHHHHHHHH-
T ss_conf 9999999856998587417884099------9-99--779999997055799999----8997769-999999999997-
Q ss_pred HHHCCCCEEEEE
Q ss_conf 751666169999
Q gi|254780227|r 208 RSATPRSLIIHE 219 (426)
Q Consensus 208 A~s~~~~~~iVE 219 (426)
.. |+++.++-
T Consensus 110 -~G-hr~I~~i~ 119 (265)
T cd06291 110 -RG-CKHIAHIG 119 (265)
T ss_pred -CC-CCEEEEEE
T ss_conf -39-96499996
No 139
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=48.33 E-value=19 Score=15.90 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=13.0
Q ss_pred HHHHHHHCCHHHCCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 999987332121034876337999836877514899
Q gi|254780227|r 11 LDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSS 46 (426)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~krI~IltsGG~aPG~N~ 46 (426)
.+.||+...... --+.|+--||.+--+.+
T Consensus 121 Ik~~I~~~a~~~-------~DvvivEIGGTVGDIEs 149 (533)
T COG0504 121 IKDRIREAADST-------ADVVIVEIGGTVGDIES 149 (533)
T ss_pred HHHHHHHHCCCC-------CCEEEEEECCCEECCCC
T ss_conf 999999825788-------88899981771222233
No 140
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=48.32 E-value=19 Score=15.90 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999999863998899948825789999999999851899628852
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL 173 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi 173 (426)
-+.++..|.+ ..|.+++|||-.|-.+. +|++.+++.+ .+...|
T Consensus 196 RQ~a~~~LA~-~vD~miVVGG~nSSNT~-rL~eia~~~~--~~ty~I 238 (670)
T PRK00087 196 RQEAAEKLAK-KVDVMIVVGGKNSSNTT-KLYEICKSNC--TNTIHI 238 (670)
T ss_pred HHHHHHHHHH-HCCEEEEECCCCCHHHH-HHHHHHHHHC--CCEEEE
T ss_conf 9999999986-59999998998972599-9999999779--998996
No 141
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=48.04 E-value=19 Score=15.87 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 745699999999863998899948825789999999999851899628852
Q gi|254780227|r 123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL 173 (426)
Q Consensus 123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi 173 (426)
+.+-++.+.+...+.+. .++.+||.. ..+.++.+.++++..+++|+|.
T Consensus 31 G~dl~~~ll~~~~~~~~-~v~llG~~~--~~~~~~~~~l~~~yp~l~i~g~ 78 (171)
T cd06533 31 GSDLMPALLELAAQKGL-RVFLLGAKP--EVLEKAAERLRARYPGLKIVGY 78 (171)
T ss_pred HHHHHHHHHHHHHHCCC-EEEEEECCH--HHHHHHHHHHHHHCCCCEEEEE
T ss_conf 19999999999986497-499980898--9999999999978899379998
No 142
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=47.97 E-value=19 Score=15.86 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=24.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC----HHHCCCCC
Q ss_conf 3799983687751489999999999998569978999838----36601079
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRF----GYQGLLLD 77 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~----G~~GL~~~ 77 (426)
+||.|+=|||= =|+..|.+.+ .....+||.+.+ |..++.++
T Consensus 1 MkVLVIGsGGR---EHAla~kl~~----Sp~v~~l~~aPGn~NpG~~~~a~~ 45 (485)
T PRK05784 1 MKVLLVGDGAR---EHAIAEALAK----SPKGYRIYALSSHLNPGIEEIVKK 45 (485)
T ss_pred CEEEEECCCHH---HHHHHHHHHC----CCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 98999898889---9999999960----989898999738987525677642
No 143
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=47.33 E-value=20 Score=15.80 Aligned_cols=51 Identities=18% Similarity=0.065 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 56999999998639988999488257899999999998518996288522223477
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND 180 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND 180 (426)
+.....++.|.+.++|++|+.+.+.+......+.+ . .++|+|.+-..+++.
T Consensus 42 ~~e~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~~~---~--~~iPvV~id~~~~~~ 92 (269)
T cd06275 42 ERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLER---Y--RHIPMVVMDWGPEDD 92 (269)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH---H--CCCCEEEECCCCCCC
T ss_conf 99999999999569999999368898378999998---2--899889984678889
No 144
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=47.26 E-value=20 Score=15.79 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CC
Q ss_conf 2688888689999873321210348763379998-368775148999999999999856997899983836601079-91
Q gi|254780227|r 2 VEFLSYISNLDMWILTGVLSFLEKDMVAHKVAFL-TAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLD-DK 79 (426)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~krI~Il-tsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~-~~ 79 (426)
|+.++-+..+..|.+. . .-+.||.+ |-|+ +|.-=.++++.|... ++..|.-+.=-..-+-.+ ++
T Consensus 1 M~i~~t~~el~~~~~~-----~----~~~~ig~VPTMG~----LH~GHlsLi~~A~~~-~d~vvvSIFVNP~QF~~~eD~ 66 (512)
T PRK13477 1 MRILRTVAGLRTWLRN-----Q----RSETIGFVPTMGA----LHQGHLSLIRRARQE-NDVVLVSIFVNPLQFGPNEDL 66 (512)
T ss_pred CEEECCHHHHHHHHHH-----H----CCCEEEEECCCCH----HHHHHHHHHHHHHHH-CCEEEEEEEECCCCCCCCHHH
T ss_conf 9476659999999998-----3----7994899889723----758999999999986-996999972787778986457
Q ss_pred EECCCCCHHHHHHHHHCCCCCCCCCCCC------------------CCCCCHHHHCCCCCCCHHHHHHHHHHHHHC-C-C
Q ss_conf 3046269888874640787400336788------------------865301110123456745699999999863-9-9
Q gi|254780227|r 80 ITITEDMRQNAEQLLSYGGSPIGNSRVK------------------LTNFSDCIKRGLIKKDENPLEVSAHHLMQS-G-V 139 (426)
Q Consensus 80 ~~l~~l~~~~v~~~~~~GGt~LgtsR~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-I 139 (426)
..--.....+...+...|-+++-..... +...-++. ..+.+++-++..+.++ + +
T Consensus 67 ~~YPr~~~~D~~ll~~~gvd~vf~P~~~emYp~~~~~~~~~~~~~~l~~~l~G~------~RpghF~GV~Tvv~kLf~iv 140 (512)
T PRK13477 67 ERYPRTLEADRELCESAGVDAIFAPSPEELYPGGAKSITQVQPPAELTSHLCGA------SRPGHFDGVATVVTRLLNLV 140 (512)
T ss_pred HHCCCCHHHHHHHHHHCCCCEEECCCHHHCCCCCCCCEEEECCCCCCCHHHCCC------CCCCHHHHHHHHHHHHHHHC
T ss_conf 767999899999999689999988988980899998717981663112344177------68506778999999999636
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 88999488257899999999998518996288522223477
Q gi|254780227|r 140 TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND 180 (426)
Q Consensus 140 d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND 180 (426)
.-=...=|.--++....+.+..++.++++.|+++|--=+.|
T Consensus 141 ~P~~a~fGeKD~QQl~vIk~mv~dl~~~v~i~~~ptvRe~d 181 (512)
T PRK13477 141 QPKRAYFGEKDWQQLAIIRRLVADLNLPVTIVGCPTVREAD 181 (512)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCEECCC
T ss_conf 99989982322879999999999719993899708637899
No 145
>PHA00447 lysozyme
Probab=47.20 E-value=20 Score=15.79 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 899999999998518996288522223477222114633565
Q gi|254780227|r 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALT 192 (426)
Q Consensus 151 ~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdT 192 (426)
+++...|-..+..+.....|+| .||+..+. |||||-
T Consensus 99 ~~al~~Li~~L~~~yp~~~I~G-----Hrd~~~k~-CPgFdv 134 (142)
T PHA00447 99 MQSLKSLLVTLLAKYPGAEIRA-----HHDVAPKA-CPSFDL 134 (142)
T ss_pred HHHHHHHHHHHHHHCCCCEEEE-----CCCCCCCC-CCCCCH
T ss_conf 9999999999999889987981-----15889988-979668
No 146
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=47.07 E-value=20 Score=15.77 Aligned_cols=78 Identities=9% Similarity=-0.120 Sum_probs=39.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999863998899948825789999999999851899628852222347722211463356599999999999998
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN 206 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~ 206 (426)
....++.|...++|++|+.+-..+......+. +. + |+|.+-++-+-+++ ++++|-. +...++++.+.
T Consensus 44 e~~~l~~l~~~~vdGiIi~~~~~~~~~i~~~~----~~--~-pvV~~~~~~~~~~~----~V~~Dn~-~~~~~~~~~L~- 110 (260)
T cd06286 44 ELEYLELLKTKQVDGLILCSRENDWEVIEPYT----KY--G-PIVLCEEYDSKNIS----SVYIDHY-EAFYEALKYLI- 110 (260)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH----HC--C-CEEEEECCCCCCCC----EEEECHH-HHHHHHHHHHH-
T ss_conf 99999999847999999936879989999998----64--9-99999577889999----8997869-99999999999-
Q ss_pred HHHHCCCCEEEEE
Q ss_conf 7751666169999
Q gi|254780227|r 207 ERSATPRSLIIHE 219 (426)
Q Consensus 207 ~A~s~~~~~~iVE 219 (426)
+ .. |+++.++.
T Consensus 111 ~-~G-~~~i~~i~ 121 (260)
T cd06286 111 Q-KG-YRKIAYCI 121 (260)
T ss_pred H-CC-CCEEEEEE
T ss_conf 7-59-97399993
No 147
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=46.61 E-value=20 Score=15.73 Aligned_cols=117 Identities=7% Similarity=0.003 Sum_probs=62.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99983687751489999999999998569978999838366010799130462698888746407874003367888653
Q gi|254780227|r 32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNF 111 (426)
Q Consensus 32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~ 111 (426)
||++..-=.-|=...++.++-+.+... |++++-.. .++
T Consensus 2 IGvivp~i~npff~~l~~gi~~~~~~~--GY~~ll~~-------~~~--------------------------------- 39 (261)
T cd06272 2 IGLIWPSVSRVALTELVTGINQAISKN--GYNMNVSI-------TPS--------------------------------- 39 (261)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEEE-------CCC---------------------------------
T ss_conf 899977987589999999999999984--99899996-------898---------------------------------
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 01110123456745699999999863998899948825789999999999851899628852222347722211463356
Q gi|254780227|r 112 SDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGAL 191 (426)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfd 191 (426)
.....+.+.++.+|++|+.+-..+-.....+. ..++|+|.+=...+.+++ +++.|
T Consensus 40 ---------------~~~~~~~l~~~~vDGiIi~~~~~~~~~~~~~~------~~~iPvV~~~~~~~~~~~----~V~~D 94 (261)
T cd06272 40 ---------------LAEAEDLFKENRFDGVIIFGESASDVEYLYKI------KLAIPVVSYGVDYDLKYP----IVNVD 94 (261)
T ss_pred ---------------HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH------HCCCCEEEECCCCCCCCC----EEEEC
T ss_conf ---------------59999999967998999978989979999997------489939998367899998----99968
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 5999999999999987751666169999
Q gi|254780227|r 192 TAAQVSACFFDNISNERSATPRSLIIHE 219 (426)
Q Consensus 192 TA~~~~a~~i~~l~~~A~s~~~~~~iVE 219 (426)
-. ....++++.+.. .. |+++.++-
T Consensus 95 n~-~~~~~a~~~L~~--~G-~~~i~~i~ 118 (261)
T cd06272 95 NE-KAMELAVLYLAE--KG-HKKIAYIG 118 (261)
T ss_pred HH-HHHHHHHHHHHH--CC-CCCEEEEC
T ss_conf 89-999999999998--69-98289966
No 148
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=46.54 E-value=20 Score=15.72 Aligned_cols=80 Identities=9% Similarity=0.005 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-CCCCHHHHHHHHHHHHHH
Q ss_conf 5699999999863998899948825789999999999851899628852222347722211-463356599999999999
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH-QSLGALTAAQVSACFFDN 203 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td-~tiGfdTA~~~~a~~i~~ 203 (426)
+.....++.|.++++|++|+.+...+-.....|. + .++|+|-+=...++ .+ .++++|-. ....++++.
T Consensus 42 ~~e~~~i~~l~~~~vDGiI~~~~~~~~~~~~~l~----~--~~~PvV~i~~~~~~----~~~~~V~~Dn~-~~~~~a~~~ 110 (268)
T cd06298 42 EKELKVLNNLLAKQVDGIIFMGGKISEEHREEFK----R--SPTPVVLAGSVDED----NELPSVNIDYK-KAAFEATEL 110 (268)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH----H--CCCCEEEECCCCCC----CCCCEEEECHH-HHHHHHHHH
T ss_conf 9999999999966999999826779999999999----6--69989995775789----99878984889-999999999
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 998775166616999
Q gi|254780227|r 204 ISNERSATPRSLIIH 218 (426)
Q Consensus 204 l~~~A~s~~~~~~iV 218 (426)
+.. .. |+++.++
T Consensus 111 L~~--~G-~~~I~~i 122 (268)
T cd06298 111 LIK--NG-HKKIAFI 122 (268)
T ss_pred HHH--CC-CCEEEEE
T ss_conf 997--29-9669999
No 149
>TIGR01975 isoAsp_dipep beta-aspartyl peptidase; InterPro: IPR010229 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of proteins include metallopeptidases belonging to the MEROPS peptidase family M38 (clan MJ, beta-aspartyl dipeptidase family). This entry includes the beta-aspartyl dipeptidase from Escherichia coli, (3.4.19.5 from EC, IadA), which degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This entry also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that may have an equivalent in function. This family shows homology to dihydroorotases. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerisation, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase..
Probab=46.31 E-value=20 Score=15.70 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=34.9
Q ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 9999998639988999488257899999999998518996288522223477222114633565
Q gi|254780227|r 129 VSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALT 192 (426)
Q Consensus 129 ~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdT 192 (426)
+-++.|++-||.+.++.|- |++|+=-+=+||..||..+|.=||..-
T Consensus 112 AKArAL~eEGvs~y~ltGa------------------Y~vP~~TlTgsv~sDl~LIDkvIGvGe 157 (391)
T TIGR01975 112 AKARALEEEGVSCYVLTGA------------------YEVPVRTLTGSVKSDLLLIDKVIGVGE 157 (391)
T ss_pred HHHHHHHHCCEEEEEEECC------------------EECCCCCCCCCEEEEEEEEEEEEEEEE
T ss_conf 9998652078269996333------------------135520015112432678833554245
No 150
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=45.32 E-value=21 Score=15.60 Aligned_cols=46 Identities=11% Similarity=0.158 Sum_probs=28.7
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCE-EEEECCHHHCCCCCC
Q ss_conf 33799983687751489999999999998569978-999838366010799
Q gi|254780227|r 29 AHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAE-LIYYRFGYQGLLLDD 78 (426)
Q Consensus 29 ~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~-v~G~~~G~~GL~~~~ 78 (426)
.+||.++..|- .-=+|..+ ++.+.+.. +|++ +|.....|..+++.-
T Consensus 1 ~mkil~~~~~~-~Ghv~p~~-aL~~eL~~--~gheV~~~~~~~~~~~ve~a 47 (406)
T COG1819 1 RMKILFVVCGA-YGHVNPCL-ALGKELRR--RGHEVVFASTGKFKEFVEAA 47 (406)
T ss_pred CCEEEEEECCC-CCCHHHHH-HHHHHHHH--CCCEEEEEECHHHHHHHHHH
T ss_conf 95799981776-43226669-99999997--69749997377899999983
No 151
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily subfamily IIA hydrolase, TIGR01459; InterPro: IPR006356 These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are restricted to the Gram-negative and primarily alpha proteobacteria. Only one sequence has been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some scepticism..
Probab=45.18 E-value=21 Score=15.59 Aligned_cols=60 Identities=12% Similarity=-0.053 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCC
Q ss_conf 999999987187431884188612355898--679999999999999999779986699998598699643089852688
Q gi|254780227|r 329 WFADKFANMIKAERSIVQKSGYFARSAPSG--SEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGR 406 (426)
Q Consensus 329 ~La~~i~~~~~~~~~~~~~lGy~qRgg~Ps--~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k 406 (426)
++|+++++..| -..|.|.|- .||..+ ..+-+-..+.|+.+-+ .. . .+|.+.+
T Consensus 179 ~~Ael~~~lGG----------~Vi~~GKPypaif~~al---------~~~~~~~~~~~l~vGD-s~-----~-tDi~gan 232 (243)
T TIGR01459 179 ELAELYKELGG----------KVIYVGKPYPAIFDKAL---------KELEEREKRRVLFVGD-SL-----V-TDIAGAN 232 (243)
T ss_pred HHHHHHHHCCC----------EEEEECCCCHHHHHHHH---------HHHCCCCCCEEEEEEC-CH-----H-HHHHHHH
T ss_conf 45787876298----------79970498789999999---------9742788864899807-06-----7-7666666
Q ss_pred CCCCCHHH
Q ss_conf 20777589
Q gi|254780227|r 407 VFDTNTPW 414 (426)
Q Consensus 407 ~vd~~~~~ 414 (426)
.+-+++.|
T Consensus 233 ~~gidtal 240 (243)
T TIGR01459 233 AVGIDTAL 240 (243)
T ss_pred HHHHHHHH
T ss_conf 78788886
No 152
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=44.94 E-value=21 Score=15.56 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 56999999998639988999488257899999999998518996288522223477-22211463356599999999999
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND-IIPIHQSLGALTAAQVSACFFDN 203 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND-i~~td~tiGfdTA~~~~a~~i~~ 203 (426)
+..+.+.+.+....+|++|+.+-..+-.....|. + .++|+|.+-.+.+.. .+ +++.|- ..-..++++.
T Consensus 46 ~~~~~~~~~l~~~~vDGiIl~~~~~~~~~~~~l~----~--~~iP~V~~~r~~~~~~~~----~V~~Dn-~~~~~~a~~~ 114 (268)
T cd06271 46 DPLEVYRRLVESGLVDGVIISRTRPDDPRVALLL----E--RGFPFVTHGRTELGDPHP----WVDFDN-EAAAYQAVRR 114 (268)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH----H--CCCCEEEECCCCCCCCCC----EEEECH-HHHHHHHHHH
T ss_conf 9999999999848988899967889819999999----7--799999976656899996----899576-9999999999
Q ss_pred HHHHHHHCCCCEEEEEECC-------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9987751666169999769-------874289999874014332310111111100014576523287865598999999
Q gi|254780227|r 204 ISNERSATPRSLIIHEVMG-------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIER 276 (426)
Q Consensus 204 l~~~A~s~~~~~~iVEvMG-------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~ 276 (426)
+. + .. |+++.++--.- |..||..+... .+..++..++-+..++.+.-.+.
T Consensus 115 L~-~-~G-~~~I~~i~~~~~~~~~~~R~~Gf~~al~~--------------------~gl~~~~~~~~~~~~~~~~~~~~ 171 (268)
T cd06271 115 LI-A-LG-HRRIALLNPPEDLTFAQHRRAGYRRALAE--------------------AGLPLDPALIVSGDMTEEGGYAA 171 (268)
T ss_pred HH-H-HC-CCEEEECCCCCCCHHHHHHHHHHHHHHHH--------------------CCCCCCCCEEEECCCCHHHHHHH
T ss_conf 99-8-59-87487548875460799999999999998--------------------39997711365068757779999
Q ss_pred HHHHHHCCC
Q ss_conf 999850289
Q gi|254780227|r 277 LSKVMEKKG 285 (426)
Q Consensus 277 i~~~~~~~~ 285 (426)
+++.++.+.
T Consensus 172 ~~~ll~~~~ 180 (268)
T cd06271 172 AAELLALPD 180 (268)
T ss_pred HHHHHHCCC
T ss_conf 999996599
No 153
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=43.86 E-value=22 Score=15.46 Aligned_cols=21 Identities=10% Similarity=-0.029 Sum_probs=13.2
Q ss_pred HHHHCCCCEEEEECCHHHHHH
Q ss_conf 998639988999488257899
Q gi|254780227|r 133 HLMQSGVTILHTIGGDDTNTT 153 (426)
Q Consensus 133 ~l~~~~Id~Li~IGGdgS~~~ 153 (426)
.++..+.|++|.-||-|+-..
T Consensus 37 ~~~~~~~~giiLS~GPg~p~~ 57 (184)
T cd01743 37 ELELLNPDAIVISPGPGHPED 57 (184)
T ss_pred HHHHCCCCEEEECCCCCCHHH
T ss_conf 997329799999999989256
No 154
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=43.58 E-value=22 Score=15.43 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 6745699999999863998---89994882578999999999985189962885222234772221146335659999
Q gi|254780227|r 122 KDENPLEVSAHHLMQSGVT---ILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQV 196 (426)
Q Consensus 122 ~~~~~~~~~~~~l~~~~Id---~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~ 196 (426)
++-+.++++.+.|-+++++ .+|.+||-=.-.-+--.+..+ .-+|+.|.||-|. +.-+|.|+|--|++|+
T Consensus 218 Ksl~~~~~~~~~l~~~g~~R~~~ivalGGGvvgDl~GF~Ast~---~RGi~~i~iPTTL---La~VDssvGGKtgIN~ 289 (488)
T PRK13951 218 KTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTF---KRGVGLSFYPTTL---LAQVDASVGGKNAIDF 289 (488)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHH---HCCCCEEECCCHH---HHHHHHHCCCCEEEEC
T ss_conf 7899999999999976999675599978828878899999999---6499878754059---9877630256605768
No 155
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=43.01 E-value=23 Score=15.37 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCC
Q ss_conf 56999999998639988999488257899999999998518
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKN 165 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~ 165 (426)
+.+.++++-|++.+||.|+.+||.--+.++..++..+...+
T Consensus 72 ~Tv~kaV~i~kee~idflLAVGGGSViD~tK~IAa~a~y~G 112 (384)
T COG1979 72 ETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIAAAAKYDG 112 (384)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 99999999999739639999568420011778874354689
No 156
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=42.71 E-value=23 Score=15.35 Aligned_cols=126 Identities=17% Similarity=0.081 Sum_probs=68.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN 110 (426)
Q Consensus 31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~ 110 (426)
|||++...-.-|=-..++.|+-+.+.. .|++++-..- ++
T Consensus 1 kIgvivp~~~~pf~~~~~~gi~~~a~~--~g~~~~~~~~------~~--------------------------------- 39 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKE--LGVELIVLDA------QN--------------------------------- 39 (267)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH--CCCEEEEEEC------CC---------------------------------
T ss_conf 999996899898999999999999998--4999999969------99---------------------------------
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCCC
Q ss_conf 30111012345674569999999986399889994882578999999999985189962885222234772221--1463
Q gi|254780227|r 111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPI--HQSL 188 (426)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~t--d~ti 188 (426)
+.+.....++.+.+.++|++++..-+...... .+ +.+.+ .+||+|.+ |++++.. ..++
T Consensus 40 ------------~~~~e~~~i~~~~~~~vdgiI~~~~~~~~~~~-~~-~~~~~--~~iPvV~~----d~~~~~~~~~~~V 99 (267)
T cd01536 40 ------------DVSKQIQQIEDLIAQGVDGIIISPVDSAALTP-AL-KKANA--AGIPVVTV----DSDIDGGNRLAYV 99 (267)
T ss_pred ------------CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH-HH-HHHHH--CCCCEEEE----ECCCCCCCCCEEE
T ss_conf ------------99999999999997599999993158415589-99-99998--79969998----2566788864599
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3565999999999999987751666169999
Q gi|254780227|r 189 GALTAAQVSACFFDNISNERSATPRSLIIHE 219 (426)
Q Consensus 189 GfdTA~~~~a~~i~~l~~~A~s~~~~~~iVE 219 (426)
+.|--- ....+.+.+..-. .-++++.++.
T Consensus 100 ~~D~~~-~g~~a~~~L~~~~-~g~~~i~~i~ 128 (267)
T cd01536 100 GTDNYE-AGRLAGEYLAKLL-GGKGKVAIIE 128 (267)
T ss_pred ECCHHH-HHHHHHHHHHHHC-CCCCEEEEEC
T ss_conf 628899-9999999999974-9994799954
No 157
>KOG3857 consensus
Probab=42.61 E-value=23 Score=15.34 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC--------C-----------CCCEEEEECCC
Q ss_conf 45699999999863998899948825789999999999851--------8-----------99628852222
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEK--------N-----------YNITVVGLPKT 176 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~--------~-----------~~i~vigiPKT 176 (426)
...+..+++-.++.+.|.++.|||.-.+.+|...+-+...- + .-.|.|.||-|
T Consensus 113 v~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~Asn~~~eflDyvg~pigk~~~~s~p~lPLiAipTT 184 (465)
T KOG3857 113 VGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLASNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPTT 184 (465)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 234999999987336655898768504556888988602887630002378666666555555634750257
No 158
>PRK10992 cell morphogenesis/cell wall metabolism regulator; Provisional
Probab=42.45 E-value=17 Score=16.13 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=22.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 99999999863998899948825789999
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTAC 155 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~ 155 (426)
..+..+.+++++|| +|+||+-|+.-|.
T Consensus 15 ~p~aa~vF~~~gID--FCCgG~~~L~eA~ 41 (220)
T PRK10992 15 IPRATALFREYDLD--FCCGGKQTLARAA 41 (220)
T ss_pred CCCHHHHHHHCCCC--CCCCCCHHHHHHH
T ss_conf 96689999994982--3089974899999
No 159
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=42.10 E-value=24 Score=15.29 Aligned_cols=124 Identities=15% Similarity=0.148 Sum_probs=68.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN 110 (426)
Q Consensus 31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~ 110 (426)
+||++...-.-|=...++.|+-+.+... |++++-+.. ++
T Consensus 1 tIgvi~p~~~~~f~~~~~~gi~~~a~~~--gy~~~~~~~------~~--------------------------------- 39 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAA--GYQVLLANS------QN--------------------------------- 39 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEEEC------CC---------------------------------
T ss_conf 9899978897799999999999999986--998999979------99---------------------------------
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 30111012345674569999999986399889994882578999999999985189962885222234772221146335
Q gi|254780227|r 111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGA 190 (426)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGf 190 (426)
+.+.....++.+.+.++|++++.+-+.+.... .+.+.+ .++|+|.+-..++.+-. ..++++
T Consensus 40 ------------~~~~~~~~i~~~~~~~vDgiIi~~~~~~~~~~---~~~~~~--~~ipvV~~~~~~~~~~~--~~~V~~ 100 (264)
T cd01537 40 ------------DAEKQLSALENLIARGVDGIIIAPSDLTAPTI---VKLARK--AGIPVVLVDRDIPDGDR--VPSVGS 100 (264)
T ss_pred ------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH---HHHHHH--CCCCEEEECCCCCCCCC--CEEEEE
T ss_conf ------------98999999999997699999996798886899---999997--59979998566788888--719997
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 6599999999999998775166616999
Q gi|254780227|r 191 LTAAQVSACFFDNISNERSATPRSLIIH 218 (426)
Q Consensus 191 dTA~~~~a~~i~~l~~~A~s~~~~~~iV 218 (426)
|.. .....+.+.+. + .. ++++.++
T Consensus 101 d~~-~~g~~~~~~l~-~-~g-~~~i~~i 124 (264)
T cd01537 101 DNE-QAGYLAGEHLA-E-KG-HRRIALL 124 (264)
T ss_pred CHH-HHHHHHHHHHH-H-CC-CCCEEEC
T ss_conf 779-99999999998-6-29-8624530
No 160
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=42.09 E-value=24 Score=15.28 Aligned_cols=47 Identities=15% Similarity=0.001 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 69999999986399889994882578999999999985189962885222234
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTID 178 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTID 178 (426)
.....++.+...++|++|+..=..+-.....+. + .++|+|.+-.+.+
T Consensus 43 ~e~~~i~~l~~~~vDgiIl~~~~~~~~~~~~~~----~--~~iPvV~i~~~~~ 89 (267)
T cd06283 43 KEKEYLESLLAYQVDGLIVNPTGNNKELYQRLA----K--NGKPVVLVDRKIP 89 (267)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH----H--CCCCEEEECCCCC
T ss_conf 999999999966999999858779989999999----7--6998999688578
No 161
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009 The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=42.08 E-value=24 Score=15.28 Aligned_cols=128 Identities=15% Similarity=0.099 Sum_probs=74.9
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCE--EEEECCHHH-CCCC-CCCEECCCCCHHHHHHHHHCC-CCCC
Q ss_conf 7633799983687751489999999999998569978--999838366-0107-991304626988887464078-7400
Q gi|254780227|r 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAE--LIYYRFGYQ-GLLL-DDKITITEDMRQNAEQLLSYG-GSPI 101 (426)
Q Consensus 27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~--v~G~~~G~~-GL~~-~~~~~l~~l~~~~v~~~~~~G-Gt~L 101 (426)
|..+..-|+.+||=+-|+=++++ +.+++.+..+.++ .+|-.+|.+ .|.+ ...+++..++ +..+.+.+ ...+
T Consensus 1 ~~~~~~~~~~~gGGTGG~fPAlA-~a~~l~~~~~~~~v~~lG~~~g~e~~lv~~~~~~~~~~i~---~~gl~~~~~~~~~ 76 (368)
T TIGR01133 1 MMNKMKKVALAGGGTGGIFPALA-VAEELIKRGPEVEVVWLGTKRGLEERLVPSKEGIEFLTIP---VGGLRRKGSKKLL 76 (368)
T ss_pred CCCCCEEEEEECCCCCHHHHHHH-HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE---ECCCCCCCCHHHH
T ss_conf 99882289997278302689999-9999997489369998506775000034321574177774---0100365510146
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCC
Q ss_conf 336788865301110123456745699999999863998899948825789999999999851899-6288522223477
Q gi|254780227|r 102 GNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYN-ITVVGLPKTIDND 180 (426)
Q Consensus 102 gtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~-i~vigiPKTIDND 180 (426)
.+... .--.-+-++.+.|+++.-|.++-.||.=|.=....- ..++ ||+| +-.|=
T Consensus 77 ~~~~~---------------~~~~~~~~a~~~l~~~~p~~v~G~GGY~s~P~~~AA------~l~g~iP~~----~EQN~ 131 (368)
T TIGR01133 77 KLPLL---------------KLLKAVLQARRILKKFKPDVVVGFGGYVSGPAGLAA------KLLGRIPLI----LEQNA 131 (368)
T ss_pred HHHHH---------------HHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH------HHCCCCCEE----EEECC
T ss_conf 78899---------------999999999999860087479874736789999998------766799489----86154
Q ss_pred CCC
Q ss_conf 222
Q gi|254780227|r 181 IIP 183 (426)
Q Consensus 181 i~~ 183 (426)
+||
T Consensus 132 ~pG 134 (368)
T TIGR01133 132 VPG 134 (368)
T ss_pred HHH
T ss_conf 125
No 162
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=41.69 E-value=24 Score=15.25 Aligned_cols=126 Identities=12% Similarity=0.054 Sum_probs=63.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999863998899948825789999999999851899628852222347722211463356599999999999998
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN 206 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~ 206 (426)
....++.|..+++|++|+.+..-+-.....+.+ .++|+|.+-.++++. .+.++++|-- ....++++.+.
T Consensus 44 e~~~l~~l~~~~vdGiIi~~~~~~~~~~~~l~~------~~~PvV~i~~~~~~~---~~~~V~~Dn~-~~~~~a~~~L~- 112 (268)
T cd06270 44 EREAIEFLLERRCDALILHSKALSDDELIELAA------QVPPLVLINRHIPGL---ADRCIWLDNE-QGGYLATEHLI- 112 (268)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEECCCCCCC---CCCEEEECHH-HHHHHHHHHHH-
T ss_conf 999999999659999999527799899999996------499899986768999---8988983889-99999999999-
Q ss_pred HHHHCCCCEEEEEE-CC------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 77516661699997-69------874289999874014332310111111100014576523287865598999999999
Q gi|254780227|r 207 ERSATPRSLIIHEV-MG------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSK 279 (426)
Q Consensus 207 ~A~s~~~~~~iVEv-MG------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~ 279 (426)
+ .. |+++.++-- +. |..||..+... .+..++..++.+..++.+.-.+.+++
T Consensus 113 ~-~G-~~~i~~i~~~~~~~~~~~R~~Gf~~al~~--------------------~gl~~~~~~i~~~~~~~~~g~~~~~~ 170 (268)
T cd06270 113 E-LG-HRKIACITGPLTKEDARLRLQGYRDALAE--------------------AGIALDESLIIEGDFTEEGGYAAMQE 170 (268)
T ss_pred H-CC-CCCEEEECCCCCCCHHHHHHHHHHHHHHH--------------------CCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 8-39-98389845988883199999999999998--------------------59997800476167767889998899
Q ss_pred HHHCCC
Q ss_conf 850289
Q gi|254780227|r 280 VMEKKG 285 (426)
Q Consensus 280 ~~~~~~ 285 (426)
.+++..
T Consensus 171 ll~~~~ 176 (268)
T cd06270 171 LLARGA 176 (268)
T ss_pred HHHCCC
T ss_conf 995699
No 163
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=41.59 E-value=24 Score=15.23 Aligned_cols=128 Identities=17% Similarity=0.122 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4569999999986399889994882578999999999985189962885222234-772221146335659999999999
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTID-NDIIPIHQSLGALTAAQVSACFFD 202 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTID-NDi~~td~tiGfdTA~~~~a~~i~ 202 (426)
++..+..++.+...++|++|+.|-...-.....+ .+. ++|+|-+=.+.+ .+++ |+++|-.- -..++++
T Consensus 100 ~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l----~~~--~~P~V~i~~~~~~~~~~----~V~~Dn~~-~~~~a~~ 168 (333)
T COG1609 100 PEKEREYLETLLQKRVDGLILLGERPNDSLLELL----AAA--GIPVVVIDRSPPGLGVP----SVGIDNFA-GAYLATE 168 (333)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH----HHC--CCCEEEEECCCCCCCCC----EEECCHHH-HHHHHHH
T ss_conf 6999999999987698989993587880889999----865--99989993767777897----79709899-9999999
Q ss_pred HHHHHHHHCCCCEEEEEE-------CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 999877516661699997-------6987428999987401433231011111110001457652328786559899999
Q gi|254780227|r 203 NISNERSATPRSLIIHEV-------MGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIE 275 (426)
Q Consensus 203 ~l~~~A~s~~~~~~iVEv-------MGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~ 275 (426)
.|. + ..| +++.++-- .-|..||........- .++-.++.+..++.+.-.+
T Consensus 169 ~L~-~-~G~-~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~--------------------~~~~~~i~~~~~~~~~g~~ 225 (333)
T COG1609 169 HLI-E-LGH-RRIAFIGGPLDSSASRERLEGYRAALREAGL--------------------PINPEWIVEGDFSEESGYE 225 (333)
T ss_pred HHH-H-CCC-CEEEEEECCCCCCCHHHHHHHHHHHHHHCCC--------------------CCCCCEEEECCCCHHHHHH
T ss_conf 999-8-799-8599996798772189999999999997599--------------------9774236616788789999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999850289
Q gi|254780227|r 276 RLSKVMEKKG 285 (426)
Q Consensus 276 ~i~~~~~~~~ 285 (426)
.+++.+....
T Consensus 226 ~~~~ll~~~~ 235 (333)
T COG1609 226 AAERLLARGE 235 (333)
T ss_pred HHHHHHHCCC
T ss_conf 9999985489
No 164
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.44 E-value=24 Score=15.22 Aligned_cols=128 Identities=11% Similarity=0.075 Sum_probs=70.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN 110 (426)
Q Consensus 31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~ 110 (426)
|||+++.+-..|=...+++|+-++|+.+ |++|.-. +. .. +.
T Consensus 1 kIg~i~~~~~npf~~~v~~G~e~aA~~~--G~~v~~~-----~~-~~------~~------------------------- 41 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKEL--GVKVTFQ-----GP-AS------ET------------------------- 41 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE-----CC-CC------CC-------------------------
T ss_conf 9899959999859999999999999980--9989997-----28-99------78-------------------------
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCCC
Q ss_conf 30111012345674569999999986399889994882578999999999985189962885222234772221--1463
Q gi|254780227|r 111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPI--HQSL 188 (426)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~t--d~ti 188 (426)
+.+.....++.+...++|++++..-|.+... ..|.+ +.+ .+||||.+ |+++... ...+
T Consensus 42 ------------d~~~q~~~i~~~i~~~vDgIii~p~~~~~~~-~~l~~-a~~--~gIPvV~~----d~~~~~~~~~~~V 101 (273)
T cd06310 42 ------------DVAGQVNLLENAIARGPDAILLAPTDAKALV-PPLKE-AKD--AGIPVVLI----DSGLNSDIAVSFV 101 (273)
T ss_pred ------------CHHHHHHHHHHHHHCCCCEEEEECCCCHHHH-HHHHH-HHH--CCCCEEEE----ECCCCCCCCCEEE
T ss_conf ------------9999999999999749999999168714479-99999-998--49985898----0333467760399
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3565999999999999987751666169999
Q gi|254780227|r 189 GALTAAQVSACFFDNISNERSATPRSLIIHE 219 (426)
Q Consensus 189 GfdTA~~~~a~~i~~l~~~A~s~~~~~~iVE 219 (426)
|.|.- .....+.+.+.. ....++++.++.
T Consensus 102 ~~dn~-~~G~~a~~~l~~-~~~~~~~i~~i~ 130 (273)
T cd06310 102 ATDNV-AAGKLAAEALAE-LLGKKGKVAVIS 130 (273)
T ss_pred EECHH-HHHHHHHHHHHH-HCCCCCCEEEEC
T ss_conf 85649-999999999998-648998478853
No 165
>TIGR00216 ispH_lytB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants . LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood . Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response .; GO: 0019288 isopentenyl diphosphate biosynthetic process mevalonate-independent pathway.
Probab=41.28 E-value=24 Score=15.20 Aligned_cols=56 Identities=5% Similarity=-0.176 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8999999998718743188418861235589867999999999999999977998669999
Q gi|254780227|r 327 GSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGED 387 (426)
Q Consensus 327 ~~~La~~i~~~~~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i 387 (426)
...+.+.++.++....+.+..-.| .-|--+--+||.-=+.||+.+.....-+|+-+
T Consensus 215 ~~~i~~~~~~~~~~~~v~~~lnnh-----fmsfntIC~AT~~RQ~Av~~la~~D~Dl~~Vi 270 (354)
T TIGR00216 215 TKEIVAALKARYPEKEVPVSLNNH-----FMSFNTICYATQNRQDAVKELAPEDVDLMLVI 270 (354)
T ss_pred HHHHHHHHHHHHHHHEEEEEHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 999999999863431310000033-----22243476788888999998322051489997
No 166
>pfam11931 DUF3449 Domain of unknown function (DUF3449). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 181 to 207 amino acids in length. This domain has two conserved sequence motifs: PIP and CEICG.
Probab=41.23 E-value=24 Score=15.22 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH--CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 69999999986399889994882578999999999985--1899628852222347722211463356599999999999
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKE--KNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDN 203 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~--~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~ 203 (426)
.+..=+-.|.-+++.+-.=|.||-|+.|=..+-..|.+ +.+++.+.|||-| ..+-+ =|-++-+.++-..
T Consensus 78 PIPyWLYKLhGL~~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcLGI~nt----~~F~~-----IT~I~dA~~Lw~k 148 (187)
T pfam11931 78 PIPYWLYKLHGLGKEFKCEICGNTSYKGRKAFEKHFSEWRHAYGLRCLGIPNT----RHFKE-----ITKIEEALELWEK 148 (187)
T ss_pred CCCHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCHHHHCCCEECCCCCH----HHHCC-----CCCHHHHHHHHHH
T ss_conf 55289999707997166575688510157899987070135315701589980----88747-----5729999999999
Q ss_pred HHHHH
Q ss_conf 99877
Q gi|254780227|r 204 ISNER 208 (426)
Q Consensus 204 l~~~A 208 (426)
|..+.
T Consensus 149 lk~~~ 153 (187)
T pfam11931 149 LKKQT 153 (187)
T ss_pred HHHHH
T ss_conf 99876
No 167
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=41.00 E-value=24 Score=15.18 Aligned_cols=47 Identities=28% Similarity=0.306 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 456999999998639988999488257899999999998518996288522223477
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND 180 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND 180 (426)
++.++++++.|..-+ .-| ..|+..|---|+.+.-++.++ +. .+||+.
T Consensus 66 deAie~Aa~ILv~aK-rPl-lyg~s~tscEA~~~gielaE~---~g-----aviD~~ 112 (429)
T COG1029 66 DEAIEKAAEILVNAK-RPL-LYGWSSTSCEAQELGIELAEK---LG-----AVIDSN 112 (429)
T ss_pred HHHHHHHHHHHHHCC-CCE-EECCCCCHHHHHHHHHHHHHH---HC-----CEECCC
T ss_conf 999999999998267-852-623553218899999999987---37-----277478
No 168
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=40.96 E-value=25 Score=15.17 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=25.3
Q ss_pred CEEEEEECCC----CCCHHHHHHHHHCCCCCCCH
Q ss_conf 1699997698----74289999874014332310
Q gi|254780227|r 214 SLIIHEVMGR----NCGWLTAYSAHCYLNMIQDR 243 (426)
Q Consensus 214 ~~~iVEvMGR----~aG~LAl~~ala~ga~~~~i 243 (426)
+=|++.-||- |+|.||...|.|++.|+.+.
T Consensus 496 ~~HvfqNlGDGTy~HSG~LAIRaaVAa~~niTyK 529 (1168)
T PRK13030 496 TKHVFQNLGDGTYFHSGLLAIRQAVAAGANITYK 529 (1168)
T ss_pred CCEEEEECCCCCCHHCCHHHHHHHHHCCCCEEEE
T ss_conf 9737997876620203269999999769973899
No 169
>TIGR01663 PNK-3'Pase polynucleotide kinase 3'-phosphatase; InterPro: IPR006550 These sequences represent the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3'-phosphates is essential for the further processing of the break by DNA polymerases , . The central phosphatase domain is a member of the IIIA subfamily (IPR006549 from INTERPRO) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by IPR006551 from INTERPRO. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. .
Probab=40.63 E-value=25 Score=15.14 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHCCC
Q ss_conf 101111111000145765232878------65598999999999850289
Q gi|254780227|r 242 DRNYIDGFIFSPDFKGIDGVYLPE------MSFNLEVEIERLSKVMEKKG 285 (426)
Q Consensus 242 ~i~~~~~~~~~~~~~~~d~iliPE------~~~~~~~~~~~i~~~~~~~~ 285 (426)
+.||+|+.++..+.++.-+|+.-- ..+.+++|=..|+...++-|
T Consensus 198 ~yPE~P~KL~~L~~~GyK~~~FTNQ~~I~RGK~~~~~FK~K~~~~V~KLG 247 (526)
T TIGR01663 198 LYPEVPRKLKELEKDGYKLVLFTNQGSIARGKLNLDDFKVKVKAVVEKLG 247 (526)
T ss_pred ECCCCCHHHHHHHHCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 45654457888741882799984577300155565676668888898618
No 170
>KOG1436 consensus
Probab=40.44 E-value=25 Score=15.12 Aligned_cols=26 Identities=12% Similarity=-0.091 Sum_probs=18.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 12355898679999999999999999
Q gi|254780227|r 351 FARSAPSGSEDLSLIKKMVVLAVDSA 376 (426)
Q Consensus 351 ~qRgg~Ps~~Dr~~a~~lG~~Av~~~ 376 (426)
+.-||-.|-.|...-.+.|..-|++-
T Consensus 335 IG~GGV~SG~DA~EkiraGASlvQly 360 (398)
T KOG1436 335 IGCGGVSSGKDAYEKIRAGASLVQLY 360 (398)
T ss_pred EEECCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 84168565476999986271399888
No 171
>TIGR02638 lactal_redase lactaldehyde reductase; InterPro: IPR013460 The proteins in this entry form a distinct clade of iron-containing alcohol dehydrogenases. The genes encoding these proteins are generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in the production of lactaldehydes, which are reduced by these enzymes to 1,2 propanediol . These enzymes are also sometimes called 1,2 propanediol oxidoreductases. They are active under anaerobic conditions in E. coli, while being inactivated by reactive oxygen species under aerobic conditions . Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase..
Probab=39.95 E-value=25 Score=15.07 Aligned_cols=107 Identities=19% Similarity=0.158 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4569999999986399889994882578999999999985189--96288522223477222114633565999999999
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNY--NITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFF 201 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~--~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i 201 (426)
.+..+.=++.+++-+=|+||.|||-=++++|..+-=......+ -.+.=||-+|=.-=+| .+=-.|.+=++||..
T Consensus 72 ~~~Vk~G~a~~~~sgaDy~iAiGGGSp~DtAKAIgIi~~NPeF~d~~SLeGva~tk~~~vP----~~AipTTaGTAAEvT 147 (380)
T TIGR02638 72 ITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIIVNNPEFSDVVSLEGVADTKKKGVP----IIAIPTTAGTAAEVT 147 (380)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCCCCCC----EEECCCCCCHHHHHH
T ss_conf 8999989999860589779985689740003032000028384551104575531256661----586688753144422
Q ss_pred HHHHHHHHHCCCCEEEE-------------EECCCCCCHHHHHHHH
Q ss_conf 99998775166616999-------------9769874289999874
Q gi|254780227|r 202 DNISNERSATPRSLIIH-------------EVMGRNCGWLTAYSAH 234 (426)
Q Consensus 202 ~~l~~~A~s~~~~~~iV-------------EvMGR~aG~LAl~~al 234 (426)
-|.-.+=...++...+| ++|=.=--.|++.+|+
T Consensus 148 iNyVItDE~~~~K~VcvDp~~IP~vAv~D~~~M~~mP~~ltAATGm 193 (380)
T TIGR02638 148 INYVITDEENKRKFVCVDPHDIPDVAVVDAELMLSMPKSLTAATGM 193 (380)
T ss_pred HCCEEECCCCCEEEEEECCCCCCEEEEECHHHHHHCCHHHHHHHCH
T ss_conf 1514762454512688756767806654737762155000000020
No 172
>pfam04405 ScdA_N Domain of Unknown function (DUF542). This domain is always found in conjunction with the HHE domain (pfam03794) at the N-terminus.
Probab=39.94 E-value=25 Score=15.09 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 699999999863998899948825789999
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTAC 155 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~ 155 (426)
...+..+.|++++|| ++.||+-|+.-|.
T Consensus 11 ~~p~~a~vF~~~gID--FCCgG~~~L~eA~ 38 (56)
T pfam04405 11 EDPRAARVFRKYGID--FCCGGKVSLAEAC 38 (56)
T ss_pred HCHHHHHHHHHCCCC--CCCCCCCHHHHHH
T ss_conf 794799999994966--5689980699999
No 173
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=39.83 E-value=18 Score=15.98 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=43.6
Q ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC---------CCCCCCCCC-CH
Q ss_conf 999999863998899948825789999999999851899628852222347---------722211463-35
Q gi|254780227|r 129 VSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDN---------DIIPIHQSL-GA 190 (426)
Q Consensus 129 ~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDN---------Di~~td~ti-Gf 190 (426)
.+..=|+++||+-+-.|=||.++.-...-++ -.++++-.+|.+=| ++|..+-|| |+
T Consensus 225 ~v~pLleklGi~V~~~~tGD~r~~ev~~aHr------A~lN~v~CSks~~nlA~~m~~~YGIPyf~~SFyGi 290 (470)
T TIGR01283 225 LVKPLLEKLGIRVLATITGDSRYAEVQTAHR------AKLNMVQCSKSMINLARKMEEKYGIPYFEVSFYGI 290 (470)
T ss_pred CCCCHHHHCCCEEEEECCCCCCHHHHHCCCC------CCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCHH
T ss_conf 0010143389179997378887899840411------55433575236788999999646897587214108
No 174
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.63 E-value=26 Score=15.04 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=47.3
Q ss_pred EEEEEEECCC---CCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3799983687---7514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r 30 HKVAFLTAGG---IAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV 106 (426)
Q Consensus 30 krI~IltsGG---~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~ 106 (426)
||+||+.||- |-.-+|-++-.+.. + ...|.+...|---..-+ .-+.+.-|-..--+|-
T Consensus 2 Kkv~ViLSGCGV~DGaEIHEsVltlla-i--~r~GA~~~cFAP~~~Q~----------------hViNHlTGE~m~EtRN 62 (217)
T COG3155 2 KKVGVILSGCGVYDGAEIHESVLTLLA-I--SRSGAQAVCFAPDKQQV----------------HVINHLTGEAMPETRN 62 (217)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH-H--HHCCCEEEEECCCCHHH----------------HHHHHCCCCCCHHHHH
T ss_conf 626999756755540788999999999-9--75386258746992256----------------6665314212403444
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 8865301110123456745699999999863998899948825789999999
Q gi|254780227|r 107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLL 158 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~ 158 (426)
-+- +...+.|+.+. -+...+...+|+|++=||.|..+....++
T Consensus 63 VLv-EsARIaRG~i~--------~l~~a~~e~~DALivPGGFGAAKNLsdFA 105 (217)
T COG3155 63 VLV-ESARIARGEIR--------PLAQADAEELDALIVPGGFGAAKNLSDFA 105 (217)
T ss_pred HHH-HHHHHHHCCCC--------CHHHCCHHHCCEEECCCCCCHHHHHHHHH
T ss_conf 688-77777615666--------23456976634266158630232057774
No 175
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.77 E-value=26 Score=14.96 Aligned_cols=127 Identities=13% Similarity=0.033 Sum_probs=63.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99983687751489999999999998569978999838366010799130462698888746407874003367888653
Q gi|254780227|r 32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNF 111 (426)
Q Consensus 32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~ 111 (426)
||++...=.-|=...+++|+-+.|... |++++-. .+..
T Consensus 2 IGvvv~~~~npff~~v~~gie~~a~~~--G~~~~i~-----------------------------------~s~~----- 39 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQ--KVNLIVS-----------------------------------IANQ----- 39 (267)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEE-----------------------------------CCCC-----
T ss_conf 899968998979999999999999974--9999998-----------------------------------3999-----
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC--CCC
Q ss_conf 011101234567456999999998639988999488257899999999998518996288522223477222114--633
Q gi|254780227|r 112 SDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ--SLG 189 (426)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~--tiG 189 (426)
+.+.....+++|...++|++++..-|.+.... .+.+ +. ..+||||.+ |.+..+.+. .+|
T Consensus 40 -----------d~~~q~~~i~~li~~~vDgiIi~p~~~~~~~~-~~~~-~~--~~gIPvV~~----d~~~~~~~~~~~V~ 100 (267)
T cd06322 40 -----------DLNKQLSDVEDFITKKVDAIVLSPVDSKGIRA-AIAK-AK--KAGIPVITV----DIAAEGVAVVSHVA 100 (267)
T ss_pred -----------CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH-HHHH-HH--HCCCCEEEE----ECCCCCCCCCEEEE
T ss_conf -----------99999999999997499999990676101069-9999-99--759978998----34655566432996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 56599999999999998775166616999976
Q gi|254780227|r 190 ALTAAQVSACFFDNISNERSATPRSLIIHEVM 221 (426)
Q Consensus 190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvM 221 (426)
.|--. -...+...+... ...++++.++..-
T Consensus 101 ~Dn~~-~g~~a~~~l~~~-l~g~~~i~~i~~~ 130 (267)
T cd06322 101 TDNYA-GGVLAGELAAKV-LNGKGQVAIIDYP 130 (267)
T ss_pred ECCHH-HHHHHHHHHHHH-HCCCCEEEEEECC
T ss_conf 26289-999999999997-3389459999179
No 176
>PRK12483 threonine dehydratase; Reviewed
Probab=38.53 E-value=27 Score=14.93 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=70.3
Q ss_pred HHHHHHHHCC--CCEEEE-ECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-------------------CCCC-
Q ss_conf 9999998639--988999-4882578999999999985189962885222234772-------------------2211-
Q gi|254780227|r 129 VSAHHLMQSG--VTILHT-IGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI-------------------IPIH- 185 (426)
Q Consensus 129 ~~~~~l~~~~--Id~Li~-IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi-------------------~~td- 185 (426)
..++-+++.. +|++++ +||-|-..+... +++..+.+++||||---=.+++ .|+-
T Consensus 175 iglEIleq~p~~lD~V~vpVGGGGLiaGia~---~~K~~~P~ikVIGVEpe~a~~m~~Sl~aG~~v~L~~v~tfaDG~AV 251 (521)
T PRK12483 175 VAMEILRQHPGPLDAIFVPVGGGGLIAGIAA---YVKYLRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAV 251 (521)
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHH---HHHHHCCCCEEEEEEECCCHHHHHHHHHCCEEECCCCCCCCCCCCC
T ss_conf 9999998678998889976787417889999---9986199970899996787689999983983676888852676455
Q ss_pred CCCCHHH---HHH-----------HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH----------------H
Q ss_conf 4633565---999-----------999999999987751666169999769874289999874----------------0
Q gi|254780227|r 186 QSLGALT---AAQ-----------VSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAH----------------C 235 (426)
Q Consensus 186 ~tiGfdT---A~~-----------~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~al----------------a 235 (426)
..+|-.| +-+ .++.+|..+..+ .|+ |+| -+|=|++++-- .
T Consensus 252 ~~vG~~tF~i~k~~VDdvv~Vs~deIcaAIkdife~-----tr~-I~E----PAGAlalAglk~y~~~~~~~gk~~v~i~ 321 (521)
T PRK12483 252 AQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDD-----TRS-ITE----PAGALAVAGIKKYVEREGIEGQTLVAID 321 (521)
T ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHH-----CCE-EEC----CCHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 778988999998619957998917999999999982-----666-634----7056679999999985488767379995
Q ss_pred CCCCCCCHHHHHHHHHHC---CCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 143323101111111000---145765232878655989999999998
Q gi|254780227|r 236 YLNMIQDRNYIDGFIFSP---DFKGIDGVYLPEMSFNLEVEIERLSKV 280 (426)
Q Consensus 236 ~ga~~~~i~~~~~~~~~~---~~~~~d~iliPE~~~~~~~~~~~i~~~ 280 (426)
||||+-+-..-....+.. .....-.+-|||.|=++..|++.+-.+
T Consensus 322 sGaN~nF~rLr~v~era~~Ge~rE~~~~v~IpE~~Gsf~~f~~~~g~~ 369 (521)
T PRK12483 322 SGANVNFDRLRHVAERAELGEQREAIIAVTIPEQPGSFKAFCAALGKR 369 (521)
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 046667542135577653163414799995588886899999986667
No 177
>TIGR00419 tim triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase () (TIM) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism . The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder .; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process.
Probab=38.47 E-value=27 Score=14.93 Aligned_cols=25 Identities=12% Similarity=-0.186 Sum_probs=13.8
Q ss_pred EECCCCCCHHHHHHHHHCCCCCCCH
Q ss_conf 9769874289999874014332310
Q gi|254780227|r 219 EVMGRNCGWLTAYSAHCYLNMIQDR 243 (426)
Q Consensus 219 EvMGR~aG~LAl~~ala~ga~~~~i 243 (426)
.-.|-|.|.+-+.+--=.|+.+++|
T Consensus 67 ~~~GahTG~i~Aem~~d~Ga~g~li 91 (244)
T TIGR00419 67 VKSGAHTGEISAEMLKDLGAKGTLI 91 (244)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 1787652236899998459972887
No 178
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=37.16 E-value=28 Score=14.80 Aligned_cols=123 Identities=13% Similarity=0.059 Sum_probs=61.6
Q ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999863998899948825789999999999851899628852222347722211-4633565999999999999987
Q gi|254780227|r 129 VSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH-QSLGALTAAQVSACFFDNISNE 207 (426)
Q Consensus 129 ~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td-~tiGfdTA~~~~a~~i~~l~~~ 207 (426)
.+.+.+..+++|++|+++=..+-.....|.+ .++|+|.+ |......+ .++++|-.. ...++++.+. +
T Consensus 55 ~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~------~~iPvV~~----d~~~~~~~~~~V~~d~~~-a~~~~~~~L~-~ 122 (275)
T cd06295 55 WLARYLASGRADGVILIGQHDQDPLPERLAE------TGLPFVVW----GRPLPGQPYCYVGSDNVG-GGRLATEHLL-A 122 (275)
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEE----CCCCCCCCCCEEEECHHH-HHHHHHHHHH-H
T ss_conf 9999998489988999799899799999995------79999999----862689999789828799-9999999999-8
Q ss_pred HHHCCCCEEEEEE-CC------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 7516661699997-69------8742899998740143323101111111000145765232878655989999999998
Q gi|254780227|r 208 RSATPRSLIIHEV-MG------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKV 280 (426)
Q Consensus 208 A~s~~~~~~iVEv-MG------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~ 280 (426)
..+ +++.++-- +. |..||..+... .+..++..++-+..++.+.-.+.+++.
T Consensus 123 -~G~-~~I~~i~~~~~~~~~~~R~~Gf~~a~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (275)
T cd06295 123 -RGR-RRIAFLGGPQDMPEGEERLEGYREALAE--------------------AGLPLDPRLVAPGDFTEESGRAAMRAL 180 (275)
T ss_pred -HCC-CEEEEECCCCCCCHHHHHHHHHHHHHHH--------------------CCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf -099-8798705886672699999999999998--------------------699999417996577668799998889
Q ss_pred HHCCC
Q ss_conf 50289
Q gi|254780227|r 281 MEKKG 285 (426)
Q Consensus 281 ~~~~~ 285 (426)
++...
T Consensus 181 l~~~~ 185 (275)
T cd06295 181 LERGP 185 (275)
T ss_pred HHCCC
T ss_conf 85499
No 179
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.06 E-value=28 Score=14.79 Aligned_cols=136 Identities=14% Similarity=0.035 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 69999999986399889994882578999999999985189962885222234772221146335659999999999999
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS 205 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~ 205 (426)
.....++.+.+.++|++|+.+.+-+-.....|.+ .++|+|.+=..-+-. ..-.++++|- .+.+.++.+.+.
T Consensus 43 ~e~~~i~~l~~~~vdgiIi~~~~~~~~~~~~l~~------~~iPvV~id~~~~~~--~~~~~V~~Dn-~~a~~~a~~~L~ 113 (270)
T cd06296 43 PERQWVERLSARRTDGVILVTPELTSAQRAALRR------TGIPFVVVDPAGDPD--ADVPSVGATN-WAGGLAATEHLL 113 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEECCCCCCC--CCCCEEEECH-HHHHHHHHHHHH
T ss_conf 9999999999549999999068899999999997------499999987888888--8986899576-999999999999
Q ss_pred HHHHHCCCCEEEEEECCCCCCHHHH------HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8775166616999976987428999------9874014332310111111100014576523287865598999999999
Q gi|254780227|r 206 NERSATPRSLIIHEVMGRNCGWLTA------YSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSK 279 (426)
Q Consensus 206 ~~A~s~~~~~~iVEvMGR~aG~LAl------~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~ 279 (426)
. ..+ +++.++ .|+..-+.+. ..++.. .+..++..++.+..++.+.-.+.+++
T Consensus 114 ~--~G~-~~I~~i--~~~~~~~~~~~R~~Gf~~a~~~-----------------~~~~~~~~~i~~~~~~~~~~~~~~~~ 171 (270)
T cd06296 114 E--LGH-RRIGFI--TGPPDLLCSRARLDGYRAALAE-----------------AGIPVDPALVREGDFSTESGFRAAAE 171 (270)
T ss_pred H--HCC-CCEEEE--CCCCCCHHHHHHHHHHHHHHHH-----------------CCCCCCHHHEEECCCHHHHHHHHHHH
T ss_conf 8--589-728884--5998865599999999999998-----------------69998855533065017899999999
Q ss_pred HHHCCC--CEEEEEE
Q ss_conf 850289--5389950
Q gi|254780227|r 280 VMEKKG--SVAIFVS 292 (426)
Q Consensus 280 ~~~~~~--~~vIVvs 292 (426)
.+++.. -+++..+
T Consensus 172 ll~~~~~~~aii~~~ 186 (270)
T cd06296 172 LLALPERPTAIFAGN 186 (270)
T ss_pred HHHCCCCCCCEEECC
T ss_conf 995499886203478
No 180
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=37.01 E-value=28 Score=14.78 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 99999999998518996288522223477
Q gi|254780227|r 152 TTACDLLRYLKEKNYNITVVGLPKTIDND 180 (426)
Q Consensus 152 ~~a~~L~e~~~~~~~~i~vigiPKTIDND 180 (426)
.....|.+..++.+...-|||.|+++|+-
T Consensus 40 ~~~~~l~~li~~~~~~~vVVGlP~~m~g~ 68 (141)
T COG0816 40 QDFNALLKLVKEYQVDTVVVGLPLNMDGT 68 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 56999999999838887999667688887
No 181
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=36.36 E-value=29 Score=14.72 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCH-HHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 4569999999986399889994882-5789999999999851899628852
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGD-DTNTTACDLLRYLKEKNYNITVVGL 173 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGd-gS~~~a~~L~e~~~~~~~~i~vigi 173 (426)
.+-+...++...+.+.. ++.+||. ++... +.+.++++..++.++|.
T Consensus 34 ~dl~~~ll~~~~~~~~~-v~llG~~~~~~~~---~~~~l~~~yP~l~i~g~ 80 (172)
T pfam03808 34 TDLIPALLERAAERGKR-VFLLGGKPGVLEK---AAARLRARYPGLRIVGT 80 (172)
T ss_pred HHHHHHHHHHHHHCCCE-EEEEECCHHHHHH---HHHHHHHHCCCCEEEEE
T ss_conf 99999999999864983-8998088899999---99999988799559998
No 182
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=36.35 E-value=29 Score=14.71 Aligned_cols=170 Identities=14% Similarity=0.165 Sum_probs=85.6
Q ss_pred EEEE--EEECCCCCHHHHHHHHHHHHHHHHHCCCCE-EEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC--CCCCCC
Q ss_conf 3799--983687751489999999999998569978-99983836601079913046269888874640787--400336
Q gi|254780227|r 30 HKVA--FLTAGGIAPCLSSIIGMLINHYNKILPKAE-LIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG--SPIGNS 104 (426)
Q Consensus 30 krI~--IltsGG~aPG~N~~I~~iv~~a~~~~~~~~-v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG--t~Lgts 104 (426)
.+|| +-.-++.+|--|++--.+...+..+..++- ||..+-.-..-... ..++..+- ....|+ ..++.-
T Consensus 106 ~~ia~P~GVI~ai~P~TNPtsT~i~k~l~alK~rNaIIfspHP~a~~~~~~----~~~ii~~a---~~~aGaP~~li~~i 178 (862)
T PRK13805 106 IEIAEPIGVIAGITPTTNPTSTAIFKALIALKTRNPIIFSFHPRAQKSSIA----AAKIVLDA---AVAAGAPKDIIQWI 178 (862)
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH----HHHHHHHH---HHHCCCCCCCEEEC
T ss_conf 898773368999617989604899999999860893899358448889999----99999999---99859891436553
Q ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE-----------
Q ss_conf 78886530111012345674569999999986-399889994882578999999999985189962885-----------
Q gi|254780227|r 105 RVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQ-SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG----------- 172 (426)
Q Consensus 105 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vig----------- 172 (426)
. .+ .++ ..+.|.+ -+++-++.-||-+-.+.|.. .+.|.+|
T Consensus 179 ~-~p-----------------s~e-~t~~LM~h~~v~lilaTGg~~mVkaAys---------SGkPaigvG~GN~p~~Id 230 (862)
T PRK13805 179 E-EP-----------------SVE-ATNALMNHPGIALILATGGPGMVKAAYS---------SGKPALGVGAGNTPVYID 230 (862)
T ss_pred C-CC-----------------CHH-HHHHHHCCCCCCEEEECCCHHHHHHHHC---------CCCCCEEECCCCCCEEEE
T ss_conf 8-89-----------------989-9999856999447995597799999970---------799816557898776972
Q ss_pred -------------ECCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHH----------------HHHHCCCCEEEEEECC
Q ss_conf -------------222234772-2211463356599999999999998----------------7751666169999769
Q gi|254780227|r 173 -------------LPKTIDNDI-IPIHQSLGALTAAQVSACFFDNISN----------------ERSATPRSLIIHEVMG 222 (426)
Q Consensus 173 -------------iPKTIDNDi-~~td~tiGfdTA~~~~a~~i~~l~~----------------~A~s~~~~~~iVEvMG 222 (426)
.-||-||-+ +..|.++=.+.++ +-+.+..+.. ......+.-.=-++.|
T Consensus 231 ~tAdi~~Aa~~Ii~sktFDng~iCasEq~viv~~~i--yd~~~~~l~~~Gay~l~~eE~~kl~~~~~~~~~g~ln~~iVG 308 (862)
T PRK13805 231 KTADIKRAVNDILLSKTFDNGMICASEQSVIVDDEI--YDEVKEEFKSHGAYFLNKKELKKLEKVIFNKANGALNADIVG 308 (862)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHH--HHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCCCCCHHHHC
T ss_conf 788999999999862126688635677628862888--999999999889798089999999987424889847825418
Q ss_pred CCCCHHHHHHHHHC
Q ss_conf 87428999987401
Q gi|254780227|r 223 RNCGWLTAYSAHCY 236 (426)
Q Consensus 223 R~aG~LAl~~ala~ 236 (426)
+++-|||-.+++.-
T Consensus 309 k~a~~IA~~AGi~v 322 (862)
T PRK13805 309 QSAYKIAEMAGFKV 322 (862)
T ss_pred CCHHHHHHHCCCCC
T ss_conf 78999999829988
No 183
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=36.27 E-value=29 Score=14.71 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=25.4
Q ss_pred CEEEEEECCC----CCCHHHHHHHHHCCCCCCCHH
Q ss_conf 1699997698----742899998740143323101
Q gi|254780227|r 214 SLIIHEVMGR----NCGWLTAYSAHCYLNMIQDRN 244 (426)
Q Consensus 214 ~~~iVEvMGR----~aG~LAl~~ala~ga~~~~i~ 244 (426)
+=|++.=||- |+|.||...|.|++.|+.+.+
T Consensus 513 ~~HvfqNlGDGTy~HSG~LAIRaAVAag~nITYKI 547 (1186)
T PRK13029 513 RRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKI 547 (1186)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 97078877766211040799999986699706999
No 184
>cd02158 PanC_ATPS PanC_ATPS Pantothenate synthetase (PanC) and ATP-sulfurylase (ATPS) share a similar dinucleotide-binding domain.
Probab=35.84 E-value=29 Score=14.66 Aligned_cols=31 Identities=16% Similarity=-0.035 Sum_probs=22.7
Q ss_pred CCCCEEEEEECCC-CCCHHHHHHHHHCCCCCC
Q ss_conf 6661699997698-742899998740143323
Q gi|254780227|r 211 TPRSLIIHEVMGR-NCGWLTAYSAHCYLNMIQ 241 (426)
Q Consensus 211 ~~~~~~iVEvMGR-~aG~LAl~~ala~ga~~~ 241 (426)
..+++.+|-|||- |.||++|.-.-+.-++.+
T Consensus 13 ~~k~I~~VpTMG~LH~GHlsLi~~A~~~~~~v 44 (183)
T cd02158 13 GWKTIGAVPTMGPLHEGHLSLIKRAKKENDGV 44 (183)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 99769998088737699999999998639928
No 185
>pfam01993 MTD methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase. This enzyme family is involved in formation of methane from carbon dioxide EC:1.5.99.9. The enzyme requires coenzyme F420.
Probab=35.58 E-value=30 Score=14.64 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=34.4
Q ss_pred CHHHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 74569999999-9863998899948825789999999999851899628852
Q gi|254780227|r 123 DENPLEVSAHH-LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL 173 (426)
Q Consensus 123 ~~~~~~~~~~~-l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi 173 (426)
++++.++++.+ +++.+=|-.|+|+=|+..-+-..-.|.++.. ++|+|.|
T Consensus 43 ~pe~~e~~~~~~l~~~~pDf~i~isPN~a~PGP~~ARE~l~~~--giP~IvI 92 (276)
T pfam01993 43 DPECVEEVVLDMLEEFEPDFVIYISPNPAAPGPKKAREMLSDS--GYPAVII 92 (276)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHC--CCCEEEE
T ss_conf 9888999999999861899899978998899956799999756--9987998
No 186
>CHL00101 trpG anthranilate synthase component 2
Probab=35.17 E-value=30 Score=14.59 Aligned_cols=23 Identities=4% Similarity=-0.013 Sum_probs=16.0
Q ss_pred HHHHHCCCCEEEEECCHHHHHHH
Q ss_conf 99986399889994882578999
Q gi|254780227|r 132 HHLMQSGVTILHTIGGDDTNTTA 154 (426)
Q Consensus 132 ~~l~~~~Id~Li~IGGdgS~~~a 154 (426)
+.+++++.+++|.-||=|+-..+
T Consensus 37 ~~i~~~~p~gIILS~GPg~p~~~ 59 (190)
T CHL00101 37 SKIKNLNPRHIIISPGPGHPRDS 59 (190)
T ss_pred HHHHHCCCCEEEECCCCCCHHHC
T ss_conf 99970797989997999995785
No 187
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=35.09 E-value=30 Score=14.59 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=23.6
Q ss_pred CEEEEECCHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 88999488257899-99999999851899628852222347722
Q gi|254780227|r 140 TILHTIGGDDTNTT-ACDLLRYLKEKNYNITVVGLPKTIDNDII 182 (426)
Q Consensus 140 d~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~vigiPKTIDNDi~ 182 (426)
+..|+|-||||+-. ...|+.....+ +.+++.| =+||...
T Consensus 60 ~kVi~idGDGs~lM~lg~LaTi~~~~--~~nl~~i--vlnN~~~ 99 (157)
T cd02001 60 RKVIVVDGDGSLLMNPGVLLTAGEFT--PLNLILV--VLDNRAY 99 (157)
T ss_pred CCEEEEECCHHHHHCCCHHHHHHHCC--CCCEEEE--EEECCCC
T ss_conf 96899957558875246199998638--9887999--9979753
No 188
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=34.55 E-value=31 Score=14.53 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=60.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHH
Q ss_conf 999999998639988999488257899999999998518996288522223477222114--633565999999999999
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ--SLGALTAAQVSACFFDNI 204 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~--tiGfdTA~~~~a~~i~~l 204 (426)
....+++|...++|+|++.--|.+-- ...+.+ +.+. +||||.+ |.++.+.++ .+|+|-. .....+.+.+
T Consensus 45 Q~~~ie~li~~~vD~iiv~p~d~~~~-~~~l~~-a~~a--gIPVV~~----d~~~~~~~~~~~V~~Dn~-~~G~~~~~~l 115 (270)
T cd06308 45 QVADIENFIRQGVDLLIISPNEAAPL-TPVVEE-AYRA--GIPVILL----DRKILSDKYTAYIGADNY-EIGRQAGEYI 115 (270)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHH-HHHHHH-HHHC--CCCEEEE----CCCCCCCCEEEEEECCHH-HHHHHHHHHH
T ss_conf 99999999984999999964885200-899999-9985--9919994----588888870189951768-8899999999
Q ss_pred HHHHHHCCCCEEEEEECC---------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 987751666169999769---------87428999987401433231011111110001457652328786559899999
Q gi|254780227|r 205 SNERSATPRSLIIHEVMG---------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIE 275 (426)
Q Consensus 205 ~~~A~s~~~~~~iVEvMG---------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~ 275 (426)
... ..-+.++.++ .| |..||.. +|...++ ..++......++.+.-.+
T Consensus 116 ~~~-~~~~~~i~~i--~G~~~~~~~~~R~~Gf~~---~l~~~~~------------------~~vv~~~~~~~~~~~a~~ 171 (270)
T cd06308 116 ANL-LPGKGNILEI--WGLEGSSPAIERHDGFKE---ALSKYPK------------------IKIVAQQDGDWLKEKAEE 171 (270)
T ss_pred HHH-CCCCCEEEEE--CCCCCCCHHHHHHHHHHH---HHHHCCC------------------CEEEEEECCCCCHHHHHH
T ss_conf 985-0568549996--279998549999999999---9986689------------------524668617667999999
Q ss_pred HHHHHHHCCCCEEEEE
Q ss_conf 9999850289538995
Q gi|254780227|r 276 RLSKVMEKKGSVAIFV 291 (426)
Q Consensus 276 ~i~~~~~~~~~~vIVv 291 (426)
..+..+..+.-.-.|+
T Consensus 172 ~~~~~L~~~pdi~aI~ 187 (270)
T cd06308 172 KMEELLQANPDIDLVY 187 (270)
T ss_pred HHHHHHHHCCCCCEEE
T ss_conf 9999985088888899
No 189
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=33.98 E-value=31 Score=14.47 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=18.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 328786559899999999985028953899
Q gi|254780227|r 261 VYLPEMSFNLEVEIERLSKVMEKKGSVAIF 290 (426)
Q Consensus 261 iliPE~~~~~~~~~~~i~~~~~~~~~~vIV 290 (426)
-+-|..--+.++..+++...++.-+..+.|
T Consensus 165 Yi~Ps~gD~k~~va~~l~e~~~~gkk~~~i 194 (352)
T TIGR03282 165 YIEPSYGDDKHKVAKRLVDLIQEGKKVLAI 194 (352)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 569987865999999999999747847999
No 190
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=33.98 E-value=31 Score=14.47 Aligned_cols=79 Identities=13% Similarity=0.038 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999863998899948825789999999999851899628852222347722211463356599999999999998
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN 206 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~ 206 (426)
....++.|.++++|++|+..++.+..-. .+.+.+ .++|||.+=...+.+.+ |+..|- .....++++.+..
T Consensus 44 e~~~i~~l~~~~vdGiIi~~~~~~~~~~---~~~l~~--~~iPvV~~~~~~~~~~~----~V~~Dn-~~~~~~~~~~L~~ 113 (266)
T cd06282 44 EADAVETLLRQRVDGLILTVADAATSPA---LDLLDA--ERVPYVLAYNDPQPGRP----SVSVDN-RAAARDVAQALAA 113 (266)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHH---HHHHHH--CCCCEEEEECCCCCCCC----EEEECH-HHHHHHHHHHHHH
T ss_conf 9999999996599879996378775599---999985--59978999504789999----899887-9999999999997
Q ss_pred HHHHCCCCEEEE
Q ss_conf 775166616999
Q gi|254780227|r 207 ERSATPRSLIIH 218 (426)
Q Consensus 207 ~A~s~~~~~~iV 218 (426)
.. |+++.++
T Consensus 114 --~G-~~~i~~i 122 (266)
T cd06282 114 --LG-HRRIAML 122 (266)
T ss_pred --CC-CCEEEEE
T ss_conf --39-9569999
No 191
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=33.85 E-value=32 Score=14.46 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=7.0
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 988999488257899
Q gi|254780227|r 139 VTILHTIGGDDTNTT 153 (426)
Q Consensus 139 Id~Li~IGGdgS~~~ 153 (426)
.+++|.-||=|+-+.
T Consensus 45 ~~~IIlSpGPg~p~~ 59 (191)
T PRK06895 45 FSHILISPGPDVPRA 59 (191)
T ss_pred CCEEEEECCCCCCCC
T ss_conf 896999089998010
No 192
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=33.85 E-value=25 Score=15.07 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 99999999863998899948825789999
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTAC 155 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~ 155 (426)
..++.+.+++++|| +|+||+-|+.-|.
T Consensus 15 ~p~aa~vF~~~gID--FCCgG~~~L~eA~ 41 (224)
T PRK13276 15 YPKAADIFRSVGID--FCCGGQVSIEAAS 41 (224)
T ss_pred CCCHHHHHHHCCCC--CCCCCCHHHHHHH
T ss_conf 96589999985983--4489971399999
No 193
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=33.16 E-value=32 Score=14.39 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=56.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN 110 (426)
Q Consensus 31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~ 110 (426)
||||++.. +-|-++.+..|+.+.+... |+. ++..+.++- + +..|
T Consensus 1 ~igi~q~~-~h~~ld~~~~Gf~~~L~~~-------G~~-------~g~nv~~~~------~---na~g------------ 44 (281)
T cd06325 1 KVGILQLV-EHPALDAARKGFKDGLKEA-------GYK-------EGKNVKIDY------Q---NAQG------------ 44 (281)
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHHHHC-------CCC-------CCCCEEEEE------E---ECCC------------
T ss_conf 93899833-7674799999999999964-------976-------798379999------6---0799------------
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 301110123456745699999999863998899948825789999999999851899628852222
Q gi|254780227|r 111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKT 176 (426)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT 176 (426)
+...+..+++.|...+-|-++.||.--+...+ ....++|||....|
T Consensus 45 ------------d~~~l~~ia~~l~~~~~DlIva~gTpaaqa~~--------~~~~~iPIVF~~V~ 90 (281)
T cd06325 45 ------------DQSNLPTIARKFVADKPDLIVAIATPAAQAAA--------NATKDIPIVFTAVT 90 (281)
T ss_pred ------------CHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH--------HCCCCCCEEEEECC
T ss_conf ------------99999999999985499999987709999999--------62799998999516
No 194
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.26 E-value=34 Score=14.29 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=38.9
Q ss_pred HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99986399889994882578999999999985189962885222234772221146335659999999999999877516
Q gi|254780227|r 132 HHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSAT 211 (426)
Q Consensus 132 ~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~ 211 (426)
+.+.+..+|++|+.+-..+......|. + .++|+|.+=...+.+++ +++.|-. .-..++++.|.. ..
T Consensus 50 ~~~~~~~vDGiIi~~~~~~~~~~~~l~----~--~~iPvV~idr~~~~~~~----~V~~Dn~-~~~~~a~~~Li~--~G- 115 (283)
T cd06279 50 ALVVSALVDGFIVYGVPRDDPLVAALL----R--RGLPVVVVDQPLPPGVP----SVGIDDR-AAAREAARHLLD--LG- 115 (283)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHH----H--CCCCEEEECCCCCCCCC----EEEECCH-HHHHHHHHHHHH--CC-
T ss_conf 999977999999917989989999998----5--79978998876889999----8996728-879999999997--29-
Q ss_pred CCCEEEE
Q ss_conf 6616999
Q gi|254780227|r 212 PRSLIIH 218 (426)
Q Consensus 212 ~~~~~iV 218 (426)
|+++.++
T Consensus 116 h~~Ia~i 122 (283)
T cd06279 116 HRRIGIL 122 (283)
T ss_pred CCEEEEE
T ss_conf 9869999
No 195
>pfam05833 FbpA Fibronectin-binding protein A N-terminus (FbpA). This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host.
Probab=32.12 E-value=28 Score=14.78 Aligned_cols=13 Identities=38% Similarity=0.623 Sum_probs=8.6
Q ss_pred CEEEEEECCCCCC
Q ss_conf 1699997698742
Q gi|254780227|r 214 SLIIHEVMGRNCG 226 (426)
Q Consensus 214 ~~~iVEvMGR~aG 226 (426)
+..++|+||||+=
T Consensus 111 ~~Li~ElmGr~SN 123 (447)
T pfam05833 111 YTLIVELMGRHSN 123 (447)
T ss_pred EEEEEEECCCCCC
T ss_conf 8999997178661
No 196
>TIGR01508 rib_reduct_arch diaminohydroxyphosphoribosylaminopyrimidine reductase; InterPro: IPR006401 These sequences represent a specific reductase of riboflavin biosynthesis in the archaea, diaminohydroxyphosphoribosylaminopyrimidine reductase. It should not be confused with bacterial 5-amino-6-(5-phosphoribosylamino)uracil reductase. The intermediate 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine in riboflavin biosynthesis is reduced first and then deaminated in both archaea and fungi, opposite to the order in bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain fused to the reductase domain, which is similar to this protein but found in most bacteria. .
Probab=31.94 E-value=34 Score=14.26 Aligned_cols=83 Identities=22% Similarity=0.149 Sum_probs=47.1
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHC--------CCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 8746407874003367888653011101--------23456745699999999863998899948825789999999999
Q gi|254780227|r 90 AEQLLSYGGSPIGNSRVKLTNFSDCIKR--------GLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYL 161 (426)
Q Consensus 90 v~~~~~~GGt~LgtsR~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~ 161 (426)
++-+...+-|++-||+..+---+..++. -..-.+..+++.++++|...||+.|++=||-.=..+. +
T Consensus 93 ariL~~~A~T~v~~s~~~~~Ekekk~~~l~~~gv~V~~~G~~~v~L~~lld~L~~kgv~rLmvEGGG~Li~~l------~ 166 (224)
T TIGR01508 93 ARILNKEAKTVVAVSEAEPEEKEKKVEELEKKGVEVVKFGEERVDLEKLLDILEDKGVRRLMVEGGGTLIWSL------I 166 (224)
T ss_pred CEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCEEEHHH------H
T ss_conf 2044689845999604787303678887774974899924785346899999874797099982485101022------3
Q ss_pred HHCCC-CCEEEEECCCCC
Q ss_conf 85189-962885222234
Q gi|254780227|r 162 KEKNY-NITVVGLPKTID 178 (426)
Q Consensus 162 ~~~~~-~i~vigiPKTID 178 (426)
++.=+ .|.|.--|+=|=
T Consensus 167 ~~~LvDEi~vy~aP~~~G 184 (224)
T TIGR01508 167 KENLVDEIRVYIAPKIIG 184 (224)
T ss_pred HCCCEEEEEEEECCEEEC
T ss_conf 028435899988146762
No 197
>PRK02399 hypothetical protein; Provisional
Probab=31.87 E-value=34 Score=14.25 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=47.8
Q ss_pred CCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99789998383660107991304626988887464078740033678886530111012345674569999999986399
Q gi|254780227|r 60 PKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGV 139 (426)
Q Consensus 60 ~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~I 139 (426)
.|.+++-+.-|..|--.. ..+.+.+++.. .+|+-+..-|....+ .+..+ .-.......+.+-+++.+|
T Consensus 28 ~G~~v~~iDvg~~~~p~~----~~dis~~~VA~---~~g~~~~~~~~~~dr-g~ai~----~M~~ga~~~v~~L~~~g~i 95 (407)
T PRK02399 28 AGLEVVTVDVSTLGPPPF----PADISAEEVAE---AAGDGIEAVFCSGDR-GRAMA----AMAEGAERLVRELYKRGDV 95 (407)
T ss_pred CCCCEEEEEECCCCCCCC----CCCCCHHHHHH---HCCCCHHHHHCCCCH-HHHHH----HHHHHHHHHHHHHHHCCCC
T ss_conf 699679998347889989----99879899997---559987787547988-99999----9999999999999864882
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 88999488257899999999998518996288522223
Q gi|254780227|r 140 TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI 177 (426)
Q Consensus 140 d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI 177 (426)
++.|.+||-+--.-+....+ .+| +|+||=|
T Consensus 96 ~Gvi~lGGs~GT~lat~amr-------aLP-iG~PK~m 125 (407)
T PRK02399 96 AGVIGLGGSGGTALATPAMR-------ALP-IGVPKLM 125 (407)
T ss_pred CEEEEECCCCHHHHHHHHHH-------HCC-CCCCEEE
T ss_conf 45887348740699999998-------566-6787157
No 198
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=31.54 E-value=34 Score=14.22 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=25.6
Q ss_pred HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 99986399889994882578999999999985-189962885222234772221146335659
Q gi|254780227|r 132 HHLMQSGVTILHTIGGDDTNTTACDLLRYLKE-KNYNITVVGLPKTIDNDIIPIHQSLGALTA 193 (426)
Q Consensus 132 ~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~-~~~~i~vigiPKTIDNDi~~td~tiGfdTA 193 (426)
+.+++.+.+++|.-||=|+-..+....+..++ .+.++||.|| |.|++--
T Consensus 33 ~~i~~~~p~giIlS~GPg~p~~~~~~~~~~~~~~~~~iPILGI-------------ClG~Q~i 82 (178)
T cd01744 33 EEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGI-------------CLGHQLL 82 (178)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCCCCEEEE-------------CHHHHHH
T ss_conf 9998419997998999999577344499999997469988998-------------1217889
No 199
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=30.93 E-value=35 Score=14.15 Aligned_cols=41 Identities=5% Similarity=-0.023 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCC-CHHHHHHHHHHHHHHH
Q ss_conf 9999998718743188418861235589-8679999999999999
Q gi|254780227|r 330 FADKFANMIKAERSIVQKSGYFARSAPS-GSEDLSLIKKMVVLAV 373 (426)
Q Consensus 330 La~~i~~~~~~~~~~~~~lGy~qRgg~P-s~~Dr~~a~~lG~~Av 373 (426)
+.+..++.++. .+|+-.|-.+ .|.| ...|-.||+.+|-.-+
T Consensus 344 i~ela~~if~~-~VRig~P~~~--~gl~~~~~~P~~at~~GLl~y 385 (420)
T PRK09472 344 LAACAQRVFHT-QVRIGAPLNI--TGLTDYAQEPYYSTAVGLLHY 385 (420)
T ss_pred HHHHHHHHHCC-CCEEECCCCC--CCCHHHCCCCHHHHHHHHHHH
T ss_conf 89999999689-8189658766--885443379498999999999
No 200
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.49 E-value=36 Score=14.10 Aligned_cols=86 Identities=10% Similarity=0.085 Sum_probs=52.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN 110 (426)
Q Consensus 31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~ 110 (426)
|||++...=..|=-..+.+|+-+.|+.+ |++++.... ++
T Consensus 1 kIg~vv~~~~npF~~~~~~G~~~~a~~~--G~~~~~~~~------~~--------------------------------- 39 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKAL--GYDAVELSA------EN--------------------------------- 39 (277)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEECC------CC---------------------------------
T ss_conf 9899918999869999999999999972--998999769------99---------------------------------
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 301110123456745699999999863998899948825789999999999851899628852
Q gi|254780227|r 111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL 173 (426)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi 173 (426)
+.+..-..++++...++|++++..-|..... ...+.+.+ .+||||.+
T Consensus 40 ------------d~~~q~~~i~~~i~~~vDgIii~p~~~~~~~--~~~~~a~~--~gIPvv~~ 86 (277)
T cd06319 40 ------------SAKKELENLRTAIDKGVSGIIISPTNSSAAV--TLLKLAAQ--AKIPVVIA 86 (277)
T ss_pred ------------CHHHHHHHHHHHHHCCCCEEEECCCCCCCHH--HHHHHHHH--CCCCEEEE
T ss_conf ------------9999999999999669987996477741109--99999997--69978998
No 201
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.44 E-value=36 Score=14.10 Aligned_cols=129 Identities=13% Similarity=0.087 Sum_probs=75.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN 110 (426)
Q Consensus 31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~ 110 (426)
|||++..+..-+=..+.+.|+-..|+.+ |+++.-+ ++ +++
T Consensus 1 kIa~~~~~~~~~f~~~~~~G~~~~A~~~--G~~~~v~-d~-----~~d-------------------------------- 40 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEAL--GGDLRVY-DA-----GGD-------------------------------- 40 (273)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEE-CC-----CCC--------------------------------
T ss_conf 9899971788979999999999999974--9989997-39-----999--------------------------------
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-CCCC
Q ss_conf 301110123456745699999999863998899948825789999999999851899628852222347722211-4633
Q gi|254780227|r 111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH-QSLG 189 (426)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td-~tiG 189 (426)
.+..-..++++-..++|++++...|.+.... .|.+ +.+ -+||||. +|++++... .+++
T Consensus 41 -------------~~~Q~~~i~~~i~~~vDgIii~p~d~~~~~~-~l~~-a~~--aGIPVV~----~d~~~~~~~~~~v~ 99 (273)
T cd06305 41 -------------DAKQADQIDQAIAQKVDAIIIQHGRAEVLKP-WVKR-ALD--AGIPVVA----FDVDSDNPKVNNTT 99 (273)
T ss_pred -------------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHH-HHHH-HHH--CCCCEEE----ECCCCCCCCCCEEE
T ss_conf -------------9999999999998599999994687144489-9999-998--5997899----81776767752783
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 565999999999999987751666169999769
Q gi|254780227|r 190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMG 222 (426)
Q Consensus 190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMG 222 (426)
.|-. .....+...+... ...+..+.++...|
T Consensus 100 ~dn~-~~g~~~~~~l~~~-~~g~~~v~~~~~~~ 130 (273)
T cd06305 100 QDDY-SLARLSLDQLVKD-LGGKGNVGYVNVAG 130 (273)
T ss_pred CCCH-HHHHHHHHHHHHH-HCCCCEEEEEECCC
T ss_conf 1569-9999999999998-29997599997689
No 202
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=30.32 E-value=36 Score=14.09 Aligned_cols=152 Identities=18% Similarity=0.086 Sum_probs=68.3
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCH---------HHCCCCCCCEECCCCCHHHHHHHHHCC
Q ss_conf 76337999836877514899999999999985699789998383---------660107991304626988887464078
Q gi|254780227|r 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFG---------YQGLLLDDKITITEDMRQNAEQLLSYG 97 (426)
Q Consensus 27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G---------~~GL~~~~~~~l~~l~~~~v~~~~~~G 97 (426)
|++|||+|.=-|.-+|+.|+ +-.+-+.+.. +..-+.-... +.|.+++ + +...+
T Consensus 1 m~~rrVaItG~g~~~p~g~~-~e~~w~~L~~---G~s~i~~~~~~~~~~~~~~~~g~i~~----f---d~~~~------- 62 (414)
T PRK08722 1 MSKRRVVVTGMGMLSPVGNT-VESSWKALLA---GQSGIVNIEHFDTTNFSTRFAGLVKD----F---NCEEY------- 62 (414)
T ss_pred CCCCCEEEECCEEECCCCCC-HHHHHHHHHC---CCCCEEECCCCCCCCCCCCEEEECCC----C---CHHHC-------
T ss_conf 99997999876868979599-9999999973---99836637845655798866577288----8---94675-------
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCC--------EEEEEC-CHHHHHHHHHHHHHHHHCC-CC
Q ss_conf 7400336788865301110123456745699999999863998--------899948-8257899999999998518-99
Q gi|254780227|r 98 GSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVT--------ILHTIG-GDDTNTTACDLLRYLKEKN-YN 167 (426)
Q Consensus 98 Gt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id--------~Li~IG-GdgS~~~a~~L~e~~~~~~-~~ 167 (426)
+ .....+.......--+..+.+-++.-+++ .-+++| +.+.+.......+.+.+++ ..
T Consensus 63 ---~----------~~~~~~~~d~~~~~~l~aa~~Al~dAGl~~~~~~~~r~Gv~vG~~~~~~~~~~~~~~~~~~~~~~~ 129 (414)
T PRK08722 63 ---M----------SKKDARKMDLFIQYGIAAGIQALDDSGLEVTEENAHRIGVAIGSGIGGLGLIEAGHKALVEKGPRK 129 (414)
T ss_pred ---C----------CHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf ---8----------999998669999999999999999628994324656447999405671777999999998548654
Q ss_pred CEEEEECCCCCCCCC--------CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 628852222347722--------211463356599999999999998775
Q gi|254780227|r 168 ITVVGLPKTIDNDII--------PIHQSLGALTAAQVSACFFDNISNERS 209 (426)
Q Consensus 168 i~vigiPKTIDNDi~--------~td~tiGfdTA~~~~a~~i~~l~~~A~ 209 (426)
+.-..+|.|+.|-+. ..-.++-.+|||.-...+|...+.--.
T Consensus 130 ~~p~~~~~~~~~~~a~~is~~~gl~Gp~~tv~tACsS~l~Ai~~A~~~I~ 179 (414)
T PRK08722 130 ISPFFVPSTIVNMIAGHMSIMRGLRGPNIAISTACTTGLHNIGHAARMIA 179 (414)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 58422224577899999999839989872535540789999999999986
No 203
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=30.05 E-value=37 Score=14.06 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=26.1
Q ss_pred EEEEECCHH-HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf 899948825-7899999999998518996288522223477222
Q gi|254780227|r 141 ILHTIGGDD-TNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIP 183 (426)
Q Consensus 141 ~Li~IGGdg-S~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~ 183 (426)
..+++|||| ++.....=......++.+|.+|. +||-+.+
T Consensus 90 ~Viv~gGDG~~~dIG~~~l~ha~~Rn~dit~iv----~DNevYg 129 (294)
T COG1013 90 SVIVIGGDGDAYDIGGNHLIHALRRNHDITYIV----VDNEVYG 129 (294)
T ss_pred EEEEEECCCHHHHCCHHHHHHHHHCCCCEEEEE----ECCEECC
T ss_conf 499990560775410167789997079859999----7770045
No 204
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.78 E-value=37 Score=14.03 Aligned_cols=12 Identities=0% Similarity=0.005 Sum_probs=4.5
Q ss_pred ECCCCCCCCCCC
Q ss_conf 418861235589
Q gi|254780227|r 346 QKSGYFARSAPS 357 (426)
Q Consensus 346 ~~lGy~qRgg~P 357 (426)
.++-|.++++.|
T Consensus 195 dDLp~l~~~~~~ 206 (211)
T COG3222 195 DDLPLLRDCCAP 206 (211)
T ss_pred CHHHHHHHHCCC
T ss_conf 301789986341
No 205
>PRK12342 putative electron transfer flavoprotein YdiQ; Provisional
Probab=29.62 E-value=37 Score=14.01 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=41.3
Q ss_pred HHHHHHHHCCCCEEEEE-----CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 99999986399889994-----8825789999999999851899628852222347722
Q gi|254780227|r 129 VSAHHLMQSGVTILHTI-----GGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII 182 (426)
Q Consensus 129 ~~~~~l~~~~Id~Li~I-----GGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~ 182 (426)
.+.+..-..|-|..+.+ +|-|++.+|..|+++.++.++++-+.| =.|+|.|-.
T Consensus 68 ~~~r~alAmGaD~a~li~d~~~~g~D~~~tA~~La~~i~~~~~DLVl~G-~~s~D~~tg 125 (254)
T PRK12342 68 KVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFG-EGSGDLYAQ 125 (254)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE-CCCCCCCCC
T ss_conf 9999999737988999845765666889999999999998396999993-621248988
No 206
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=29.37 E-value=38 Score=13.98 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=25.7
Q ss_pred CEEEEEECCC----CCCHHHHHHHHHCCCCCCCHH
Q ss_conf 1699997698----742899998740143323101
Q gi|254780227|r 214 SLIIHEVMGR----NCGWLTAYSAHCYLNMIQDRN 244 (426)
Q Consensus 214 ~~~iVEvMGR----~aG~LAl~~ala~ga~~~~i~ 244 (426)
+=|++.-||- |+|.||...|.|++.++.+.+
T Consensus 497 ~~HvfqNlGDGTy~HSG~LAIRaaVAag~niTYKi 531 (1155)
T PRK09193 497 EKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKI 531 (1155)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 96479978776302031799999997599738999
No 207
>KOG2178 consensus
Probab=29.32 E-value=13 Score=17.04 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=36.7
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH--HHHHHHHHHHHHH
Q ss_conf 3998899948825789999999999851899628852222347722211463356599--9999999999987
Q gi|254780227|r 137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA--QVSACFFDNISNE 207 (426)
Q Consensus 137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~--~~~a~~i~~l~~~ 207 (426)
..+|.+|++|||||.--|..|-+ . .+|= =+++..=|+||-|-- ....+.+.++...
T Consensus 167 ~~~D~iItLGGDGTvL~aS~LFq---~---~VPP---------V~sFslGslGFLtpf~f~~f~~~l~~v~~~ 224 (409)
T KOG2178 167 NRFDLIITLGGDGTVLYASSLFQ---R---SVPP---------VLSFSLGSLGFLTPFPFANFQEQLARVLNG 224 (409)
T ss_pred CCEEEEEEECCCCCEEEEHHHHC---C---CCCC---------EEEEECCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 12569999668864887546446---7---8997---------588605873245566478999999999637
No 208
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel. This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=29.16 E-value=38 Score=13.96 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 456999999998639988999488
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGG 147 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGG 147 (426)
.+.+++.++-..++|+|++|+.|=
T Consensus 18 f~~Le~li~~~~~~G~da~V~~GT 41 (288)
T TIGR00674 18 FAALEKLIDFQIENGTDAIVVVGT 41 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 889999999899707985897135
No 209
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=29.14 E-value=38 Score=13.96 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf 699999999863998899948825789999
Q gi|254780227|r 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTAC 155 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~ 155 (426)
.+.++.+-+++++|| ++.||+-|+.-|+
T Consensus 14 ~iP~A~~iFr~y~iD--FCCGG~~~L~~Aa 41 (221)
T COG2846 14 SIPRAAEIFRSYDID--FCCGGKVTLERAA 41 (221)
T ss_pred HCCCHHHHHHHCCCC--EECCCHHHHHHHH
T ss_conf 574389999983986--2058719999999
No 210
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=29.07 E-value=38 Score=13.95 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 45699999999863998899948825789999999999851899628852
Q gi|254780227|r 124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL 173 (426)
Q Consensus 124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi 173 (426)
++.++.+.+-+++-+-|++-+-||.........|.+. +|||+|-
T Consensus 94 ~~a~~nA~rlmke~GadaVKlEgg~~~~~~I~~l~~~------GIPV~gH 137 (261)
T pfam02548 94 EQALRNAARLMKEAGADAVKLEGGAEMADTIKALVDR------GIPVMGH 137 (261)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC------CCCEEEE
T ss_conf 9999999999985499989978885358999999988------9976534
No 211
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=28.28 E-value=39 Score=13.86 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCC---CC-CCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 751489999999999998569978999838366010---79-91304626988887464078740033678886530111
Q gi|254780227|r 40 IAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLL---LD-DKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCI 115 (426)
Q Consensus 40 ~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~---~~-~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~ 115 (426)
.-|-++.+|..++.+++ ++.++|.+=-|..|.+ +. +.....-.+++.+..+...|-..|..+.-.
T Consensus 31 ~lp~I~~~i~~~~~~l~---~gGRl~Y~GAGTSGrlgvlDa~E~~PTFg~~~~~v~gliAGG~~al~~~~E~-------- 99 (257)
T cd05007 31 ALPQIARAVDAAAERLR---AGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEG-------- 99 (257)
T ss_pred HHHHHHHHHHHHHHHHH---CCCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHEEEEECCHHHHHHCHHC--------
T ss_conf 89999999999999996---5982899878605889998899739877999899110243889999645311--------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 01234567456999999998639---98899948825789999999999851899628852222
Q gi|254780227|r 116 KRGLIKKDENPLEVSAHHLMQSG---VTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKT 176 (426)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~---Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT 176 (426)
-|++.+...+.+.+++ -|.+|.|---|+--...-..++.++. +...++|.-.
T Consensus 100 -------aED~~~~g~~dl~~~~~~~~DvVIgIsaSG~TPyv~~aL~~A~~~--ga~ti~I~~n 154 (257)
T cd05007 100 -------AEDDEEAGAADLQAINLTERDVVIGIAASGRTPYVLGALRYARAR--GALTIGIACN 154 (257)
T ss_pred -------CCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHC--CCCEEEEECC
T ss_conf -------256689999999980899645899994699985999999999986--9957876438
No 212
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=27.98 E-value=40 Score=13.83 Aligned_cols=27 Identities=15% Similarity=0.001 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCH
Q ss_conf 9999998775166616999976987428
Q gi|254780227|r 200 FFDNISNERSATPRSLIIHEVMGRNCGW 227 (426)
Q Consensus 200 ~i~~l~~~A~s~~~~~~iVEvMGR~aG~ 227 (426)
....+...|.. .++=+++|.-+|+...
T Consensus 78 ~~~~~~~~a~~-~r~n~iiegT~~~~~~ 104 (191)
T pfam06414 78 WVEKLIDYAIE-RGYNIILEGTLRSPDV 104 (191)
T ss_pred HHHHHHHHHHH-CCCCEEEECCCCCHHH
T ss_conf 99999999997-5999898577789799
No 213
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=27.94 E-value=40 Score=13.82 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=23.6
Q ss_pred HHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 98639988999488257899999999998518996288
Q gi|254780227|r 134 LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVV 171 (426)
Q Consensus 134 l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vi 171 (426)
|++-+|=.||-.=|-|--+++.+|+.++.+++..+-++
T Consensus 203 l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LV 240 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 03690899989998978999999999999779917999
No 214
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=27.93 E-value=40 Score=13.82 Aligned_cols=44 Identities=11% Similarity=-0.125 Sum_probs=30.5
Q ss_pred EEEEEECCC----CCCHHHHHHHHHCCCCCCCHHHH-HHHHHHCCCCCC
Q ss_conf 699997698----74289999874014332310111-111100014576
Q gi|254780227|r 215 LIIHEVMGR----NCGWLTAYSAHCYLNMIQDRNYI-DGFIFSPDFKGI 258 (426)
Q Consensus 215 ~~iVEvMGR----~aG~LAl~~ala~ga~~~~i~~~-~~~~~~~~~~~~ 258 (426)
=++|..||= |+|.+|+..|.+.+.++.+++.. .....+..+..|
T Consensus 422 ~~v~a~iGDgTffHSG~~al~~AV~~~~nit~~ILdN~~tAMTGgQ~~p 470 (595)
T TIGR03336 422 QRIVAFIGDSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNP 470 (595)
T ss_pred CCEEEEECCCCCHHCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 7379991366101056599999997699869999868850434899999
No 215
>KOG1357 consensus
Probab=27.88 E-value=40 Score=13.82 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=13.8
Q ss_pred HHHHHHHHHCCCCE---EEEECCHHHHHHHHHHH
Q ss_conf 99999998639988---99948825789999999
Q gi|254780227|r 128 EVSAHHLMQSGVTI---LHTIGGDDTNTTACDLL 158 (426)
Q Consensus 128 ~~~~~~l~~~~Id~---Li~IGGdgS~~~a~~L~ 158 (426)
+++++.+.++++.. -..+|-.+..+....|.
T Consensus 158 ~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~ 191 (519)
T KOG1357 158 EASLKSFDKYGLSRCSSRHEAGTTEEHKELEELV 191 (519)
T ss_pred HHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHH
T ss_conf 1899999984633366420036378887899999
No 216
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.82 E-value=40 Score=13.81 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=32.2
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 899948825789999999999851899628852222347722
Q gi|254780227|r 141 ILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII 182 (426)
Q Consensus 141 ~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~ 182 (426)
.+++|-+|..-+.-..|++..+ .-++++.|-|+-|++++.
T Consensus 2 t~vliR~Ds~~Kil~ALaDleR--yagiki~gkPrii~p~~a 41 (125)
T COG1844 2 TIVLIRADSYDKILTALADLER--YAGIKIRGKPRIIPPELA 41 (125)
T ss_pred EEEEEECCCHHHHHHHHHHHHH--HCCCEEECCCCCCCHHHH
T ss_conf 1799953748899999999998--558566057753582467
No 217
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.45 E-value=40 Score=13.77 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=14.5
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 368775148999999999999856
Q gi|254780227|r 36 TAGGIAPCLSSIIGMLINHYNKIL 59 (426)
Q Consensus 36 tsGG~aPG~N~~I~~iv~~a~~~~ 59 (426)
.||.-++-.....+++-.++..+|
T Consensus 8 lSG~~a~~G~~~~~g~~lav~~iN 31 (340)
T cd06349 8 LTGDNAQYGTQWKRAFDLALDEIN 31 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 878416556999999999999998
No 218
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=27.04 E-value=41 Score=13.72 Aligned_cols=70 Identities=17% Similarity=0.051 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHH---HCCCCEEEEECCHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 456999999998---639988999488257899-9999999985189962885222234772221146335659999999
Q gi|254780227|r 124 ENPLEVSAHHLM---QSGVTILHTIGGDDTNTT-ACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSAC 199 (426)
Q Consensus 124 ~~~~~~~~~~l~---~~~Id~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~ 199 (426)
++++.++++.++ +.+.|++|+.=|-|||.- |..|+=.+ .+.+-|||-.-.-..-|-+.+| |..+...
T Consensus 134 P~~W~~iA~~i~~~~~~g~DG~VItHGTDTMayTAsALSFml--~~~~KPVVlTGSQrp~~~~sSD-------a~~NL~~ 204 (421)
T PRK04183 134 PEYWQEIAEAVAEEIENGADGVVVAHGTDTMHYTAAALSFML--RKTPVPIVFVGAQRSSDRPSSD-------AAMNLIA 204 (421)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHH--HCCCCCEEEECCCCCCCCCCCC-------HHHHHHH
T ss_conf 899999999999986668987999216752999999999996--3899988996877788886860-------7999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780227|r 200 FFD 202 (426)
Q Consensus 200 ~i~ 202 (426)
++.
T Consensus 205 Av~ 207 (421)
T PRK04183 205 AVL 207 (421)
T ss_pred HHH
T ss_conf 999
No 219
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=26.99 E-value=41 Score=13.72 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=49.4
Q ss_pred HHHHHHHHHH-HHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHH-HCCCC--CCC-CCCCCCCCCCHHHHCCCCC
Q ss_conf 9999999999-85699789998383660107991304626988887464-07874--003-3678886530111012345
Q gi|254780227|r 47 IIGMLINHYN-KILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLL-SYGGS--PIG-NSRVKLTNFSDCIKRGLIK 121 (426)
Q Consensus 47 ~I~~iv~~a~-~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~-~~GGt--~Lg-tsR~~~~~~~~~~~~~~~~ 121 (426)
-++.++..+. .+ +..++.+-.|-.++ . ..+.+...+..+. +.+|. +-+ |||..
T Consensus 32 ~l~~~~~~~~~~~--~p~~~svt~~d~~~---~---~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~-------------- 89 (291)
T COG0685 32 NLEKLLERLAILL--GPGFDSVTIPDGSR---G---TPRRTSVAAAALLKRTGGIEPIPHLTCRDR-------------- 89 (291)
T ss_pred CHHHHHHHHHHHH--CCCEEEEEECCCCC---C---CCCCCHHHHHHHHHHCCCCCEEEEEECCCC--------------
T ss_conf 7999999988741--88716897379997---8---787679999999973379831347514688--------------
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 67456999999998639988999488257
Q gi|254780227|r 122 KDENPLEVSAHHLMQSGVTILHTIGGDDT 150 (426)
Q Consensus 122 ~~~~~~~~~~~~l~~~~Id~Li~IGGdgS 150 (426)
+...+..+++.+.++||..++.++||..
T Consensus 90 -n~~~i~~~l~~~~~~Gi~~ilaLrGDpp 117 (291)
T COG0685 90 -NRIEIISILKGAAALGIRNILALRGDPP 117 (291)
T ss_pred -CHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf -9899999999999818855999458987
No 220
>cd02064 Flavokinase_C Riboflavin kinase (Flavokinase). This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin. 5'-phospho transferase and ATP:FMN-adenylyltransferase activities . The C-terminal domain has FMN-adenylyltransferase activitie. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD . A domain has been identified in the N-terminal region that is well conserved in all the bacterial FAD synthetases.This domain has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases .
Probab=26.98 E-value=41 Score=13.72 Aligned_cols=58 Identities=21% Similarity=0.167 Sum_probs=38.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999999863998899948825789--999999999851899628852222347722211463356599
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNT--TACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA 194 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~--~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~ 194 (426)
.+.-.+.|++++||.++++-=+..+. .+..+-+.... ++++..|. .|.|+.||++-.-
T Consensus 57 ~~~k~~~l~~~gid~~~~i~F~~~~~~ls~~~Fi~~~l~-~l~~~~iV---------vG~Df~FG~~r~G 116 (179)
T cd02064 57 LEEKLELLAALGVDYLLVLPFDKEFASLSAEEFVKDLLV-KLNAKHVV---------VGFDFRFGKGRSG 116 (179)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHHHHHH-CCCCEEEE---------ECCCCCCCCCCCC
T ss_conf 999999998669999998447888863999999998741-47963999---------7773025789887
No 221
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=26.38 E-value=42 Score=13.65 Aligned_cols=124 Identities=10% Similarity=0.079 Sum_probs=58.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999863998899948825789999999999851899628852222347-72221146335659999999999999
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDN-DIIPIHQSLGALTAAQVSACFFDNIS 205 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDN-Di~~td~tiGfdTA~~~~a~~i~~l~ 205 (426)
-...++.+...++|++|++|.+-......... ++ ..++|-+-...++ +++ ++.+|- ..-..++++.|.
T Consensus 112 e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~~~-----~~-~~pvv~~~~~~~~~~~~----~V~~D~-~~~~~~a~~~L~ 180 (341)
T PRK11041 112 EKTFVNLIITKQIDGMLLLGSRLPFDASKEEQ-----RN-LPPMVMANEFAPELELP----TVHIDN-LTAAFEAVNYLY 180 (341)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-----CC-CCCEEEECCCCCCCCCC----EEEECH-HHHHHHHHHHHH
T ss_conf 99999988754877699956889847799997-----08-99699976878888999----899776-999999999999
Q ss_pred HHHHHCCCCEEEEEE---CC----CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 877516661699997---69----87428999987401433231011111110001457652328786559899999999
Q gi|254780227|r 206 NERSATPRSLIIHEV---MG----RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLS 278 (426)
Q Consensus 206 ~~A~s~~~~~~iVEv---MG----R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~ 278 (426)
. .. |+++.++-- +. |..||..+.... +...+-.++.+..++.+.-.+.++
T Consensus 181 ~--~G-hr~I~~i~~~~~~~~~~~R~~G~~~al~~~--------------------gl~~~~~~i~~~~~~~~~g~~~~~ 237 (341)
T PRK11041 181 E--LG-HKRIACIAGPEEMPLCHYRLQGYVQALRRC--------------------GITVDPQYIARGDFTFEAGAKAMQ 237 (341)
T ss_pred H--CC-CCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------------------CCCCCCCEEEECCCCHHHHHHHHH
T ss_conf 7--49-976999968987768999999999999986--------------------999991048954676799999999
Q ss_pred HHHHCC
Q ss_conf 985028
Q gi|254780227|r 279 KVMEKK 284 (426)
Q Consensus 279 ~~~~~~ 284 (426)
+.++..
T Consensus 238 ~ll~~~ 243 (341)
T PRK11041 238 QLLELP 243 (341)
T ss_pred HHHHCC
T ss_conf 999559
No 222
>PRK05380 pyrG CTP synthetase; Validated
Probab=26.33 E-value=42 Score=13.64 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC----CHHHH-----HHHHHCCCCCCCHHHHHHH----HHHCCCCCCCC
Q ss_conf 99999999999987751666169999769874----28999-----9874014332310111111----10001457652
Q gi|254780227|r 194 AQVSACFFDNISNERSATPRSLIIHEVMGRNC----GWLTA-----YSAHCYLNMIQDRNYIDGF----IFSPDFKGIDG 260 (426)
Q Consensus 194 ~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~a----G~LAl-----~~ala~ga~~~~i~~~~~~----~~~~~~~~~d~ 260 (426)
.+.+.+.++++..- .+.+- +-+.|.+. .|+.+ ++|++.+...-+.--+.+. ......+..|-
T Consensus 272 l~~W~~~v~~~~~~----~~~V~-IaiVGKYv~L~DaY~Sv~EAL~Hag~~~~~kv~i~wIdse~le~~~~~~~L~~~dG 346 (534)
T PRK05380 272 LSEWEDLVERIKNP----KGEVT-IALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKDVDG 346 (534)
T ss_pred HHHHHHHHHHHHCC----CCCEE-EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCHHHHHHCCCE
T ss_conf 99999999987587----65569-99863136786049999999998888638742279988576366467777631882
Q ss_pred CCCCCC
Q ss_conf 328786
Q gi|254780227|r 261 VYLPEM 266 (426)
Q Consensus 261 iliPE~ 266 (426)
|++|=.
T Consensus 347 IlVPGG 352 (534)
T PRK05380 347 ILVPGG 352 (534)
T ss_pred EEECCC
T ss_conf 995787
No 223
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=26.01 E-value=43 Score=13.60 Aligned_cols=50 Identities=16% Similarity=0.020 Sum_probs=28.5
Q ss_pred HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 999863998899948825789999999999851899628852222347722211463356599
Q gi|254780227|r 132 HHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA 194 (426)
Q Consensus 132 ~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~ 194 (426)
+.+++++-+++|.-||=|+-..+....+. ++....++|-.=.|.|++.-+
T Consensus 37 ~~i~~~~p~~IilS~GPg~p~~~~~~~~~-------------~~~~~~~iPILGIClG~Q~ia 86 (192)
T PRK08857 37 AGIEALNPSHLVISPGPCTPNEAGISLQA-------------IEHFAGKLPILGVCLGHQAIA 86 (192)
T ss_pred HHHHHCCCCEEEECCCCCCHHHCCCCHHH-------------HHHHCCCCCEEEECHHHHHHH
T ss_conf 99984297959998999996782861466-------------997357999899879999999
No 224
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=25.99 E-value=43 Score=13.60 Aligned_cols=40 Identities=25% Similarity=0.199 Sum_probs=25.2
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEE
Q ss_conf 76337999836877514899999999999985-699789998
Q gi|254780227|r 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKI-LPKAELIYY 67 (426)
Q Consensus 27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~-~~~~~v~G~ 67 (426)
|+++||+||. ||++|==.-.+.+.-.-+..+ ..+++|+-+
T Consensus 1 M~k~kI~Vl~-GG~S~EreVSl~Sg~~v~~~L~~~~y~v~~i 41 (344)
T PRK01966 1 MMKIRVALLF-GGRSAEHEVSLVSAKNILKALDKDKFEVIPI 41 (344)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 9976899995-8788218999999999999761508859999
No 225
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=25.65 E-value=44 Score=13.56 Aligned_cols=51 Identities=16% Similarity=0.056 Sum_probs=31.6
Q ss_pred HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9998639988999488257899999999998518996288522223477222114633565999
Q gi|254780227|r 132 HHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQ 195 (426)
Q Consensus 132 ~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~ 195 (426)
+.+++++-|++|.-||=|+-..+....+. .+...+++|---.|.|++.-+.
T Consensus 37 ~~i~~~~pd~IiLSpGPg~p~~~~~~~~~-------------~~~~~~~iPILGIClG~Q~ia~ 87 (195)
T PRK07649 37 SDIENMKPDFLMISPGPCSPNEAGISMEV-------------IRYFAGKIPIFGVCLGHQSIAQ 87 (195)
T ss_pred HHHHHCCCCEEEECCCCCCHHHCCCCHHH-------------HHHHCCCCCEEEECHHHHHHHH
T ss_conf 99984198989988999995784761467-------------9975289978430299999998
No 226
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.60 E-value=44 Score=13.56 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=21.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 999999998639988999488257899999999998518996288522
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLP 174 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiP 174 (426)
-+++++-.+..+ ..+.||.|.|.-.+..|+. ++|+||||-
T Consensus 257 aE~~~el~~~~~--lvvTvGDDTT~vagdIl~R------fgipiiGIt 296 (367)
T COG4069 257 AERSYELIEGAG--LVVTVGDDTTEVAGDILYR------FGIPIIGIT 296 (367)
T ss_pred HHHHHHHHCCCC--EEEEECCCCHHHHHHHHHH------CCCCEEECC
T ss_conf 467787640586--2899768603577888986------398078535
No 227
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=25.20 E-value=44 Score=13.51 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=6.2
Q ss_pred CCEEEEEEEECC
Q ss_conf 763379998368
Q gi|254780227|r 27 MVAHKVAFLTAG 38 (426)
Q Consensus 27 ~~~krI~IltsG 38 (426)
...|||-|+=||
T Consensus 5 ~dikkvLiiGsG 16 (1068)
T PRK12815 5 TDIKKILVIGSG 16 (1068)
T ss_pred CCCCEEEEECCC
T ss_conf 778889998988
No 228
>pfam07859 Abhydrolase_3 alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.
Probab=24.96 E-value=45 Score=13.48 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCC-HHHHHHHHH
Q ss_conf 35659999999999999877516---661699997698742-899998740
Q gi|254780227|r 189 GALTAAQVSACFFDNISNERSAT---PRSLIIHEVMGRNCG-WLTAYSAHC 235 (426)
Q Consensus 189 GfdTA~~~~a~~i~~l~~~A~s~---~~~~~iVEvMGR~aG-~LAl~~ala 235 (426)
-|.++++-+..+++-+...+... ++++++ ||-+|| |||+..++.
T Consensus 44 ~~p~~~~D~~~a~~~l~~~~~~~~~d~~~I~l---~G~SAGG~La~~~~~~ 91 (209)
T pfam07859 44 PFPAAIEDAYAALRWLAEHAAELGADPSRIAV---AGDSAGGNLAAALALR 91 (209)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE---EEECCCHHHHHHHHHH
T ss_conf 88279999999999999989980999542699---9978307799999999
No 229
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=24.88 E-value=45 Score=13.47 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHHHCC---CCEEE-EECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 4567456999999998639---98899-9488257899999999998518996288522223477222114633565999
Q gi|254780227|r 120 IKKDENPLEVSAHHLMQSG---VTILH-TIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQ 195 (426)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~~---Id~Li-~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~ 195 (426)
+.+.+..++.+++..++.+ -|++| +-||=||--.|+.|.+. +++..+.| |.||-.. .+.|.+
T Consensus 38 w~~r~~~l~~l~~~~r~~~~~~YDCiv~vSGGkDS~y~~~~l~~~-----~gl~pL~v--t~d~~~~-------t~~g~~ 103 (343)
T TIGR03573 38 WDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKK-----LGLNPLLV--TVDPGWN-------TELGVK 103 (343)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHH-----HCCCEEEE--EECCCCC-------CHHHHH
T ss_conf 688999999999999714899886898688772899999999998-----29925999--8359877-------989999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999987
Q gi|254780227|r 196 VSACFFDNISNE 207 (426)
Q Consensus 196 ~~a~~i~~l~~~ 207 (426)
++...+..+-.|
T Consensus 104 Ni~~l~~~lgvD 115 (343)
T TIGR03573 104 NLNNLIKKLGFD 115 (343)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999836998
No 230
>KOG0343 consensus
Probab=24.77 E-value=45 Score=13.46 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=65.0
Q ss_pred HHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH---------HCCC---------CCCCH----HHH
Q ss_conf 3660107991304626988887464078740033678886530111---------0123---------45674----569
Q gi|254780227|r 70 GYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCI---------KRGL---------IKKDE----NPL 127 (426)
Q Consensus 70 G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~---------~~~~---------~~~~~----~~~ 127 (426)
--.||-++.++.+++... +.-...-+|-++||.+++.-.++-.+. .++. +.-.- +-+
T Consensus 80 t~kgLke~~fv~~teiQ~-~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtF 158 (758)
T KOG0343 80 TLKGLKEAKFVKMTEIQR-DTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTF 158 (758)
T ss_pred HHHHHHHCCCCCHHHHHH-HHCCHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHH
T ss_conf 887676548756999987-6414220575000102358884465439999999971778878832699565299999999
Q ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC----CCCCC------------CCCC--CCC
Q ss_conf 99999998639988999488257899999999998518996288522223----47722------------2114--633
Q gi|254780227|r 128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI----DNDII------------PIHQ--SLG 189 (426)
Q Consensus 128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI----DNDi~------------~td~--tiG 189 (426)
+...+.=+-+...+=++|||.+----..+++ +++| .||-|.-+ |-... ..|. -.|
T Consensus 159 evL~kvgk~h~fSaGLiiGG~~~k~E~eRi~------~mNI-LVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMG 231 (758)
T KOG0343 159 EVLNKVGKHHDFSAGLIIGGKDVKFELERIS------QMNI-LVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMG 231 (758)
T ss_pred HHHHHHHHCCCCCCCEEECCCHHHHHHHHHH------CCCE-EEECHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 9999875205643113665712688997662------5776-99661789987541678787760478732088898776
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 5659999999999999
Q gi|254780227|r 190 ALTAAQVSACFFDNIS 205 (426)
Q Consensus 190 fdTA~~~~a~~i~~l~ 205 (426)
|...++.+.+.+-.-+
T Consensus 232 Fk~tL~~Ii~~lP~~R 247 (758)
T KOG0343 232 FKKTLNAIIENLPKKR 247 (758)
T ss_pred HHHHHHHHHHHCCHHH
T ss_conf 7888999987377233
No 231
>pfam05893 LuxC Acyl-CoA reductase (LuxC). This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components.
Probab=24.66 E-value=45 Score=13.44 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=40.5
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHH-HH----HCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 399889994882578999999999-98----5189962885222234772221146335659999999999999877516
Q gi|254780227|r 137 SGVTILHTIGGDDTNTTACDLLRY-LK----EKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSAT 211 (426)
Q Consensus 137 ~~Id~Li~IGGdgS~~~a~~L~e~-~~----~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~ 211 (426)
..-|+.++=|||++.+....-... .+ .+++.+.+|+-|. ....+++..+.=+-...+.|.+|
T Consensus 168 ~~aD~~v~wGGd~av~~ir~~~~~~~~~i~fg~K~Sfa~i~~~~-------------~~~~~a~~~a~Di~~~dQ~aC~S 234 (400)
T pfam05893 168 QHADVVIAWGGEEAIKWIRKHLPPGCDWIKFGPKISFAVVDPPA-------------AIDKAADGVAHDICFYDQQACSS 234 (400)
T ss_pred HHCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCEEEEEECCHH-------------HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 86799999288999999985379998066557830499977477-------------79999999988888743522478
Q ss_pred CCCEEEEEECCCC
Q ss_conf 6616999976987
Q gi|254780227|r 212 PRSLIIHEVMGRN 224 (426)
Q Consensus 212 ~~~~~iVEvMGR~ 224 (426)
++ +++||.=|..
T Consensus 235 p~-~vfve~~~~~ 246 (400)
T pfam05893 235 PQ-VVFVESDDGI 246 (400)
T ss_pred CE-EEEEECCCCC
T ss_conf 73-9999579865
No 232
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=24.39 E-value=46 Score=13.41 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=7.5
Q ss_pred CCCEEEEEEEECCC
Q ss_conf 87633799983687
Q gi|254780227|r 26 DMVAHKVAFLTAGG 39 (426)
Q Consensus 26 ~~~~krI~IltsGG 39 (426)
+...|||.|+=||.
T Consensus 4 ~~~ikkvLviGsGp 17 (1063)
T PRK05294 4 RTDIKKILIIGSGP 17 (1063)
T ss_pred CCCCCEEEEECCCC
T ss_conf 77878899989882
No 233
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=24.33 E-value=46 Score=13.40 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=29.2
Q ss_pred HHHCCCCEEEEECCHHHHHHHH---HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9863998899948825789999---9999998518996288522223477222114633565999
Q gi|254780227|r 134 LMQSGVTILHTIGGDDTNTTAC---DLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQ 195 (426)
Q Consensus 134 l~~~~Id~Li~IGGdgS~~~a~---~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~ 195 (426)
++..+.|++|+-||-|+..... .+.+.+.+ .++|+.| .|+|++--+.
T Consensus 37 ~~~~~~d~iilspGpg~p~~~~~~~~~i~~~~~--~~~PiLG-------------IClG~Qll~~ 86 (187)
T pfam00117 37 LELLNPDGIIISPGPGSPGDAGGAIEAIKELRE--NKIPILG-------------ICLGHQLLAL 86 (187)
T ss_pred HHHCCCCEEEECCCCCCHHHCCCHHHHHHHHHH--CCCCEEE-------------EEHHHHHHHH
T ss_conf 852599989991998611013458999999997--7998999-------------9888999999
No 234
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=24.11 E-value=47 Score=13.38 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHH---HHHHHHHHHCCCCEEEEECCH--HHCCCCCCCEE-----CCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 877514899999---999999985699789998383--66010799130-----46269888874640787400336788
Q gi|254780227|r 38 GGIAPCLSSIIG---MLINHYNKILPKAELIYYRFG--YQGLLLDDKIT-----ITEDMRQNAEQLLSYGGSPIGNSRVK 107 (426)
Q Consensus 38 GG~aPG~N~~I~---~iv~~a~~~~~~~~v~G~~~G--~~GL~~~~~~~-----l~~l~~~~v~~~~~~GGt~LgtsR~~ 107 (426)
-||..|---+|. ++++. .||+|+=+..| |+-|+..+.-. +.+..-.++..+...+|..+.-.
T Consensus 265 DGpVrGngkIIqELE~~Frg-----AGWnVIkviwG~~wd~Lfa~d~~g~L~~~m~e~~DgeyQ~~~~~~Gay~Re~--- 336 (886)
T PRK09405 265 DGPVRGNGKIIQELEGIFRG-----AGWNVIKVIWGSRWDPLLAKDTSGKLVQRMNETVDGDYQTYKAKDGAYVREH--- 336 (886)
T ss_pred CCCCCCCCHHHHHHHHHHHH-----CCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCHHHHHHH---
T ss_conf 88626851799999998854-----7961899821516899983378566999999840378887841879999998---
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 8653011101234567456999999998639988999488257899999999998518996288522223477
Q gi|254780227|r 108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND 180 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND 180 (426)
+| .....+...++.+....|..| --||-|--+--+...+... ..+-|.|-+.|||-.-
T Consensus 337 ff------------g~~pel~~LV~~lSD~ei~~L-~rGGHD~~KvyaAy~~A~~--~kgrPTVILA~TVKGy 394 (886)
T PRK09405 337 FF------------GKYPETAALVADMSDDDIWAL-NRGGHDPRKVYAAYKAAVE--HKGQPTVILAKTIKGY 394 (886)
T ss_pred HC------------CCCHHHHHHHHHCCHHHHHHH-HCCCCCHHHHHHHHHHHHH--CCCCCEEEEEEEEECC
T ss_conf 72------------899789999851899999986-5269998999999999973--6899859998876426
No 235
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1; InterPro: IPR004403 These proteins are translation factors that have been characterised in eukaryotes as the non-GTP-binding subunit of a cytosolic heterodimer that acts as a translation release factor for all three stop codons. Members of this orthologous family are found in Eukarya and Archaea. The name used should be eRF1 for the Archaea and aRF1 for the Eukarya. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=23.89 E-value=22 Score=15.54 Aligned_cols=174 Identities=17% Similarity=0.164 Sum_probs=100.5
Q ss_pred EEEECCHHHCCCCCCCEEC-CCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 9998383660107991304-6269888874640787-4003367888653011101234567456999999998639988
Q gi|254780227|r 64 LIYYRFGYQGLLLDDKITI-TEDMRQNAEQLLSYGG-SPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTI 141 (426)
Q Consensus 64 v~G~~~G~~GL~~~~~~~l-~~l~~~~v~~~~~~GG-t~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~ 141 (426)
|+==++-.-|+++++.+++ ..+|...-.- +..|| |.+.=.|.......+ +.....+...+.-+.+.++.++.+
T Consensus 148 vlDr~eat~g~vkG~~i~vL~~~Ts~vPgK-h~~GGQS~~Rf~RL~e~a~He----f~~kVge~a~e~fl~~~~e~klkG 222 (425)
T TIGR00108 148 VLDRKEATIGLVKGKRIEVLKKLTSGVPGK-HKAGGQSARRFERLRELAAHE----FLKKVGEVANEAFLPLDDEVKLKG 222 (425)
T ss_pred EECCCCEEEEEEECCCEEECHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 980886079886077012231320788740-268861267899999988546----688999999886201103552468
Q ss_pred EEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHCCCCEEEEE
Q ss_conf 99948825789999999999851899628852222347722211463356599999999999998--7751666169999
Q gi|254780227|r 142 LHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN--ERSATPRSLIIHE 219 (426)
Q Consensus 142 Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~--~A~s~~~~~~iVE 219 (426)
++ +||=+-.+.=-.=.+|+. |...-.|+ .|+ |++.|+ =+||.-+++-.++++.++.. +=.-.+ |+ +=|
T Consensus 223 il-lgGp~~tK~ef~~geylh-heL~kkVl---~~v--DvsYt~-E~G~~e~ieks~~~L~~V~~~~Ek~l~q-rf-l~E 292 (425)
T TIGR00108 223 IL-LGGPGHTKEEFAEGEYLH-HELKKKVL---STV--DVSYTG-EFGIRELIEKSADVLAEVDVVREKKLVQ-RF-LKE 292 (425)
T ss_pred EE-EECCCHHHHHHHCCCCCC-CCCCCEEE---EEE--EECCCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHH-HH-HHH
T ss_conf 99-638960356642334567-10121343---246--511067-4018999999998873362067789999-99-999
Q ss_pred ECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 76987428999987401433231011111110001457652328786
Q gi|254780227|r 220 VMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEM 266 (426)
Q Consensus 220 vMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~ 266 (426)
+ =+.-|-+|.+ | +.+..+....+++|..++-|.
T Consensus 293 ~-~~edGGlacY-----G--------e~evl~~L~lGAVe~LlvsE~ 325 (425)
T TIGR00108 293 L-IKEDGGLACY-----G--------EDEVLKALDLGAVETLLVSED 325 (425)
T ss_pred H-HHCCCCCEEC-----C--------HHHHHHHHHCCCCEEEEEEHH
T ss_conf 8-6416870212-----6--------699999862275011312100
No 236
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=23.86 E-value=42 Score=13.65 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 565999999999999987
Q gi|254780227|r 190 ALTAAQVSACFFDNISNE 207 (426)
Q Consensus 190 fdTA~~~~a~~i~~l~~~ 207 (426)
|..|...++|++.||..+
T Consensus 481 y~Ga~~aVaEa~rNl~a~ 498 (743)
T COG0046 481 YAGAKLAVAEALRNLAAT 498 (743)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 677999999999778760
No 237
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=23.63 E-value=48 Score=13.32 Aligned_cols=137 Identities=16% Similarity=0.093 Sum_probs=74.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCC-CCCCCCCCCC
Q ss_conf 799983687751489999999999998569978999838366010799130462698888746407874-0033678886
Q gi|254780227|r 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGS-PIGNSRVKLT 109 (426)
Q Consensus 31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt-~LgtsR~~~~ 109 (426)
||-|+ +|=++--+++ ..+++.++..+++.+++|+ +|-.=- +.....+. +...+.-.|-. +|..=.
T Consensus 3 kifi~-aGE~SGD~~g--a~li~~Lk~~~~~~~~~Gi-GG~~M~-~~G~~~l~-----d~~~l~vmG~~evl~~~~---- 68 (382)
T PRK00025 3 RIAIV-AGEVSGDLLG--AGLIRALKAQAPNLEFVGI-GGPRME-AAGFESLF-----DMEELAVMGLVEVLPRLP---- 68 (382)
T ss_pred EEEEE-ECCCCHHHHH--HHHHHHHHHHCCCCEEEEE-CCHHHH-HCCCCCCC-----CHHHHHHCCHHHHHHHHH----
T ss_conf 89999-0684188999--9999999831989679998-829999-76995447-----757831301999997799----
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCCC
Q ss_conf 5301110123456745699999999863998899948825789999999999851899628852-222347722211463
Q gi|254780227|r 110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL-PKTIDNDIIPIHQSL 188 (426)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi-PKTIDNDi~~td~ti 188 (426)
.--..++++.+.+++.+-|.+|.| |+-.--.+|+..+++++.+++++.. |=++ + ..
T Consensus 69 ------------~~~~~~~~~~~~i~~~~Pd~vi~I---D~pgFnlrlak~lkk~~~~ipvi~yv~Pqv----W-AW--- 125 (382)
T PRK00025 69 ------------RLLKIRKELKRLLLAEPPDVFILI---DAPDFNLRLAKKLKKALPGIPIIHYVSPSV----W-AW--- 125 (382)
T ss_pred ------------HHHHHHHHHHHHHHHCCCCEEEEE---CCCHHHHHHHHHHHHHCCCCCEEEEECCHH----H-HC---
T ss_conf ------------999999999999986499999997---783065999999997169998899947156----5-40---
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 35659999999999999
Q gi|254780227|r 189 GALTAAQVSACFFDNIS 205 (426)
Q Consensus 189 GfdTA~~~~a~~i~~l~ 205 (426)
+-. =++...+.+|.+.
T Consensus 126 r~~-R~k~~~~~~D~ll 141 (382)
T PRK00025 126 RPG-RAKKIAKATDHVL 141 (382)
T ss_pred CCC-HHHHHHHHHHHHH
T ss_conf 641-8999999998761
No 238
>pfam01328 Peroxidase_2 Peroxidase, family 2. The peroxidases in this family do not have similarity to other peroxidases.
Probab=23.55 E-value=33 Score=14.32 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=9.0
Q ss_pred CCCCCHHHHHH
Q ss_conf 68775148999
Q gi|254780227|r 37 AGGIAPCLSSI 47 (426)
Q Consensus 37 sGG~aPG~N~~ 47 (426)
+-||||+||+.
T Consensus 25 iR~PCPalNal 35 (298)
T pfam01328 25 SRAPCPALNAL 35 (298)
T ss_pred CCCCCHHHHHH
T ss_conf 57887435668
No 239
>pfam08459 UvrC_HhH_N UvrC Helix-hairpin-helix N-terminal. This domain is found in the C subunits of the bacterial and archaeal UvrABC system which catalyses nucleotide excision repair in a multi-step process. UvrC catalyses the first incision on the fourth or fifth phosphodiester bond 3' and on the eighth phosphodiester bond 5' from the damage that is to be excised. The domain described here is found to the N-terminus of a helix hairpin helix (pfam00633) motif and also co-occurs with the pfam01541 catalytic domain which is found at the N-terminus of the same proteins.
Probab=23.38 E-value=48 Score=13.29 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHC---------CC-CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 5699999999863---------99-889994882578999999999985189962885222234
Q gi|254780227|r 125 NPLEVSAHHLMQS---------GV-TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTID 178 (426)
Q Consensus 125 ~~~~~~~~~l~~~---------~I-d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTID 178 (426)
+++..+.+.+.+. .+ |-+++=||-|-+..|... +++.+.+|+++|+-|--.
T Consensus 55 dD~~~m~evl~RR~~~~~~~~~~~PDLilIDGGkgQl~~a~~~---l~~~~~~i~vi~iaK~~~ 115 (154)
T pfam08459 55 DDYASMREVLTRRFSRLLKEKLPLPDLILIDGGKGQLNAAKEV---LEELGLDIPVIGLAKGEE 115 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHH---HHHCCCCCEEEEEEECCC
T ss_conf 7899999999999986541168999889975998999999999---998599952999973565
No 240
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=23.25 E-value=48 Score=13.27 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=26.4
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 399889994882578999999999985189962885
Q gi|254780227|r 137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG 172 (426)
Q Consensus 137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vig 172 (426)
-+..-.++|||.|.|- ..+++++...+|.+.+.+
T Consensus 96 ~~~~~i~IIGG~G~mG--~~F~~~f~~sGy~V~ild 129 (374)
T PRK11199 96 PDLRPVVIVGGKGQLG--RLFAKMLTLSGYQVRILE 129 (374)
T ss_pred CCCCEEEEEECCCCHH--HHHHHHHHHCCCEEEEEC
T ss_conf 9987179980798277--999999996798799616
No 241
>PRK13129 consensus
Probab=23.24 E-value=48 Score=13.27 Aligned_cols=149 Identities=16% Similarity=0.278 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHCCCCEE--EEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC---CCCC-C-CCCCCCCHHHHHHHHH
Q ss_conf 69999999986399889--99488257899999999998518996288522223---4772-2-2114633565999999
Q gi|254780227|r 126 PLEVSAHHLMQSGVTIL--HTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI---DNDI-I-PIHQSLGALTAAQVSA 198 (426)
Q Consensus 126 ~~~~~~~~l~~~~Id~L--i~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI---DNDi-~-~td~tiGfdTA~~~~a 198 (426)
.++...+.+++.+-.+| ++..|+-++.....+.+.+.+.+.++-=+|||=+= |.-+ + -.+..+--.+-.+.+-
T Consensus 5 ri~~~F~~~k~~~~~ali~yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~ 84 (267)
T PRK13129 5 AISECFEQLKKEGRCALMPFLMAGDPDLETTAEALLILQENGADLIELGIPYSDPLADGPVIQAAATRALQSGTTLEKVL 84 (267)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999997699558988707189989999999999977999999799888877658999999999997698789999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999998775166616999976987428999987401433231011111110001457652328786559899999999
Q gi|254780227|r 199 CFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLS 278 (426)
Q Consensus 199 ~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~ 278 (426)
+.+..++.. .+-.+ -+||=..=.+.. + ...+......-+.|-+++|..|++. .+.+.
T Consensus 85 ~~~~~~r~~---~~~Pi---vlM~Y~N~i~~~--G------------~e~F~~~~~~~GvdGvIipDLP~eE---~~~~~ 141 (267)
T PRK13129 85 EMLESLKGK---LTIPI---ILFTYYNPLLNR--G------------MERFCEQAAAAGVAGLVVPDLPLEE---AEKLS 141 (267)
T ss_pred HHHHHHHCC---CCCCE---EEEEEHHHHHHH--H------------HHHHHHHHHHCCCCEEECCCCCHHH---HHHHH
T ss_conf 999985434---78888---998610789885--5------------9999999986698757678999899---99999
Q ss_pred HHHHCCCCE-EEEEECCCCC
Q ss_conf 985028953-8995042111
Q gi|254780227|r 279 KVMEKKGSV-AIFVSEGACR 297 (426)
Q Consensus 279 ~~~~~~~~~-vIVvsEG~~~ 297 (426)
...++.+-. +-.++.....
T Consensus 142 ~~~~~~gl~~I~lvaPtt~~ 161 (267)
T PRK13129 142 PIAAERGIDLILLVAPTTPA 161 (267)
T ss_pred HHHHHCCCEEEEEECCCCCH
T ss_conf 99985398168994899968
No 242
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=23.23 E-value=48 Score=13.27 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 74569999999986399889994882578999999999985189962885222234772221146335659999999999
Q gi|254780227|r 123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFD 202 (426)
Q Consensus 123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~ 202 (426)
.++.+...+++-++.+++.+|..-|- |+.|--.... .-.+||||||---.+ |.|. |
T Consensus 42 TPe~m~~ya~~a~~~g~~viIAgAGg-----AAHLPGmvAa-~T~lPViGVPv~s~~-L~Gl-----------------D 97 (162)
T COG0041 42 TPEKMFEYAEEAEERGVKVIIAGAGG-----AAHLPGMVAA-KTPLPVIGVPVQSKA-LSGL-----------------D 97 (162)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCC-----HHHCCHHHHH-CCCCCEEECCCCCCC-CCCH-----------------H
T ss_conf 98999999999987897599965751-----1106202655-587986741476233-4664-----------------8
Q ss_pred HHHHHHHHCCCCEEEEEECC----CCCCHHHHH
Q ss_conf 99987751666169999769----874289999
Q gi|254780227|r 203 NISNERSATPRSLIIHEVMG----RNCGWLTAY 231 (426)
Q Consensus 203 ~l~~~A~s~~~~~~iVEvMG----R~aG~LAl~ 231 (426)
.|.+.. .++..+=+ -+++ .|+|.||+.
T Consensus 98 SL~SiV-QMP~GiPV-aTvaIg~a~NAallAa~ 128 (162)
T COG0041 98 SLLSIV-QMPAGVPV-ATVAIGNAANAALLAAQ 128 (162)
T ss_pred HHHHHH-CCCCCCEE-EEEEECCHHHHHHHHHH
T ss_conf 778872-18999736-88760613318999999
No 243
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=22.91 E-value=49 Score=13.23 Aligned_cols=127 Identities=17% Similarity=0.080 Sum_probs=76.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf 23477222114633565999999999999987751666169999769874289999874014332310111111100014
Q gi|254780227|r 176 TIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDF 255 (426)
Q Consensus 176 TIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~ 255 (426)
.+|-|=|..=.=-.-+.-.-+...+||-+-+-. --.|+.|.= |-=||-=+|.+.||.+++.-++
T Consensus 119 p~~a~pP~P~~R~~I~~PL~tGvRaiDGlLTcG--~GQRiGIFA--~aG~GKSTLL~~i~~g~~ADv~------------ 182 (430)
T TIGR02546 119 PLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCG--EGQRIGIFA--GAGVGKSTLLGMIARGASADVN------------ 182 (430)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC--CCCEEEEEE--CCCCCHHHHHHHHHCCCCCCEE------------
T ss_conf 656781048767533465101466754344036--653057870--8886166899998618988789------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 57652328786559899999999985028953899504211111101232011222223444544355664899999999
Q gi|254780227|r 256 KGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFA 335 (426)
Q Consensus 256 ~~~d~iliPE~~~~~~~~~~~i~~~~~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~ 335 (426)
=+.||=|.=-+.-+|++..-.. ++++.+|||||=.= . ...+| +-...++-.+||.+.
T Consensus 183 ---V~ALIGERGREVREFiE~~lg~-e~~~RsVlVvsTSD-r-----------ss~eR-------~~AAy~ATaIAEYFR 239 (430)
T TIGR02546 183 ---VIALIGERGREVREFIEHLLGE-EGRKRSVLVVSTSD-R-----------SSLER-------LKAAYTATAIAEYFR 239 (430)
T ss_pred ---EEEECCCCCHHHHHHHHHCCCH-HHCCCEEEEEECCC-C-----------CHHHH-------HHHHHHHHHHHHHHH
T ss_conf ---9860278760478887520783-05242489960798-6-----------67999-------999878879999999
Q ss_pred HHHCCC
Q ss_conf 871874
Q gi|254780227|r 336 NMIKAE 341 (426)
Q Consensus 336 ~~~~~~ 341 (426)
++.+..
T Consensus 240 DQGk~V 245 (430)
T TIGR02546 240 DQGKRV 245 (430)
T ss_pred HCCCEE
T ss_conf 739907
No 244
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=22.83 E-value=39 Score=13.85 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=36.1
Q ss_pred HHHCCCCEEEEECCHHHHH---HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---
Q ss_conf 9863998899948825789---9999999998518996288522223477222114633565999999999999987---
Q gi|254780227|r 134 LMQSGVTILHTIGGDDTNT---TACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNE--- 207 (426)
Q Consensus 134 l~~~~Id~Li~IGGdgS~~---~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~--- 207 (426)
+.+.+-.-+++.=|-|+.- +...+.+++..+ +..|+..|+-=| .+.......+...-
T Consensus 68 ~~~~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR--~~rvval~aPt~---------------~E~~qwY~qRy~~~lPa 130 (270)
T COG2326 68 VAETGQRVVIVFEGRDAAGKGGAIKRITEALNPR--GARVVALPAPTD---------------RERGQWYFQRYVAHLPA 130 (270)
T ss_pred HHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCC--EEEEEECCCCCH---------------HHHCCHHHHHHHHHCCC
T ss_conf 9955985999996254457985167776506975--267762489784---------------76322899999986788
Q ss_pred -------HHHCCCCEEEEEECCC
Q ss_conf -------7516661699997698
Q gi|254780227|r 208 -------RSATPRSLIIHEVMGR 223 (426)
Q Consensus 208 -------A~s~~~~~~iVEvMGR 223 (426)
-+|--+|+.+.+|||=
T Consensus 131 ~GeiviFdRSwYnr~gVeRVmGf 153 (270)
T COG2326 131 AGEIVIFDRSWYNRAGVERVMGF 153 (270)
T ss_pred CCEEEEECHHHCCCCCEEECCCC
T ss_conf 87389865122133271440256
No 245
>KOG2770 consensus
Probab=22.82 E-value=41 Score=13.76 Aligned_cols=11 Identities=0% Similarity=0.009 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999987
Q gi|254780227|r 327 GSWFADKFANM 337 (426)
Q Consensus 327 ~~~La~~i~~~ 337 (426)
.+.+.+++++.
T Consensus 301 a~~I~~qLk~~ 311 (401)
T KOG2770 301 AEVILKQLKDG 311 (401)
T ss_pred HHHHHHHHHCC
T ss_conf 89999986058
No 246
>KOG1169 consensus
Probab=22.80 E-value=49 Score=13.21 Aligned_cols=93 Identities=14% Similarity=0.040 Sum_probs=54.8
Q ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 999998639988999488257899999999998518--996288522223477222114-63356599999999999998
Q gi|254780227|r 130 SAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKN--YNITVVGLPKTIDNDIIPIHQ-SLGALTAAQVSACFFDNISN 206 (426)
Q Consensus 130 ~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~--~~i~vigiPKTIDNDi~~td~-tiGfdTA~~~~a~~i~~l~~ 206 (426)
.+..+.+..=..+++.|||||..=...-.+...+.+ +.=||--+|-==+|||.-... ==||+.+-+.....+.++..
T Consensus 315 gL~l~~~~~~~riLVcGGDGTvGWVL~~i~~~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~ 394 (634)
T KOG1169 315 GLTLFRDVPDFRILVCGGDGTVGWVLGCIDKLNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEE 394 (634)
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 67798748763499954787303356558876424557899738975678885176547778887611348999976431
Q ss_pred HHHHCCCCEEEEEECC
Q ss_conf 7751666169999769
Q gi|254780227|r 207 ERSATPRSLIIHEVMG 222 (426)
Q Consensus 207 ~A~s~~~~~~iVEvMG 222 (426)
.....-.||-|.-.|.
T Consensus 395 a~v~~lDrW~v~v~~~ 410 (634)
T KOG1169 395 APVTKLDRWKVLVEPQ 410 (634)
T ss_pred CCCEECCEEEEEEECC
T ss_conf 6532112015786145
No 247
>pfam02457 DisA_N DisA bacterial checkpoint controller nucleotide-binding. The DisA protein is a bacterial checkpoint protein that dimerizes into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, pfam10635, that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, pfam00633, the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branch
Probab=22.70 E-value=50 Score=13.20 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998639988999488257899999999998518996288522223477222114633565999999999999987
Q gi|254780227|r 128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNE 207 (426)
Q Consensus 128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~ 207 (426)
..+++.+.+.++.+|++++.++.+... . .. +++ ||.++. .+.+.++...
T Consensus 2 ~~a~~~l~~~~iGALiVi~~~~~l~~~---~----~~--G~~-------ida~~s---------------~elL~~iF~~ 50 (122)
T pfam02457 2 REAVEGLSKRKTGALIVIERETGLEEY---I----DT--GVL-------IDAEVS---------------SELLKEIFYP 50 (122)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHH---H----HC--CEE-------EEEEEC---------------HHHHHHHCCC
T ss_conf 799999986083369999668877999---7----18--879-------938987---------------9999985679
Q ss_pred HHHCCCCEEEEEECCC
Q ss_conf 7516661699997698
Q gi|254780227|r 208 RSATPRSLIIHEVMGR 223 (426)
Q Consensus 208 A~s~~~~~~iVEvMGR 223 (426)
-+..|..-++|+= +|
T Consensus 51 ~splhDGAvII~~-~~ 65 (122)
T pfam02457 51 NTPLHDGAVIIRG-GR 65 (122)
T ss_pred CCCCCCEEEEEEC-CC
T ss_conf 9877755999989-93
No 248
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.69 E-value=50 Score=13.20 Aligned_cols=21 Identities=5% Similarity=-0.091 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEE
Q ss_conf 489999999987187431884
Q gi|254780227|r 326 VGSWFADKFANMIKAERSIVQ 346 (426)
Q Consensus 326 i~~~La~~i~~~~~~~~~~~~ 346 (426)
.+.+++++++++++.--.++.
T Consensus 230 ~~~~~A~~le~~yGiP~~~~~ 250 (421)
T cd01976 230 SMNYIARMMEEKYGIPWMEYN 250 (421)
T ss_pred HHHHHHHHHHHHHCCCEEEEC
T ss_conf 999999999998698969515
No 249
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=22.66 E-value=50 Score=13.20 Aligned_cols=100 Identities=14% Similarity=0.222 Sum_probs=60.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT 109 (426)
Q Consensus 30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~ 109 (426)
++|||+||=. -++|+-|.+.++...+..+|+-+.-= ..++ .
T Consensus 136 ~~IGVITS~t-----gAairDIl~~~~rR~P~~~viv~pt~----VQG~--------------------~---------- 176 (440)
T COG1570 136 KKIGVITSPT-----GAALRDILHTLSRRFPSVEVIVYPTL----VQGE--------------------G---------- 176 (440)
T ss_pred CEEEEECCCC-----HHHHHHHHHHHHHHCCCCEEEEEECC----CCCC--------------------C----------
T ss_conf 8689981870-----58999999998753888729998214----4178--------------------7----------
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHH---CCCCCEEE-EECCCCCCCC
Q ss_conf 53011101234567456999999998639-9889994882578999999999985---18996288-5222234772
Q gi|254780227|r 110 NFSDCIKRGLIKKDENPLEVSAHHLMQSG-VTILHTIGGDDTNTTACDLLRYLKE---KNYNITVV-GLPKTIDNDI 181 (426)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-Id~Li~IGGdgS~~~a~~L~e~~~~---~~~~i~vi-giPKTIDNDi 181 (426)
-...+-++++.+.+.+ +|.||+.=|.||....-.+.|+.-- ....|||| +|-.-.|.-|
T Consensus 177 -------------A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAVGHEtD~tL 240 (440)
T COG1570 177 -------------AAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAVGHETDFTL 240 (440)
T ss_pred -------------CHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf -------------0999999999863458998899916863488886158099999998079985840666777528
No 250
>PRK05670 anthranilate synthase component II; Provisional
Probab=22.57 E-value=50 Score=13.19 Aligned_cols=23 Identities=13% Similarity=0.058 Sum_probs=13.6
Q ss_pred HHHHHCCCCEEEEECCHHHHHHH
Q ss_conf 99986399889994882578999
Q gi|254780227|r 132 HHLMQSGVTILHTIGGDDTNTTA 154 (426)
Q Consensus 132 ~~l~~~~Id~Li~IGGdgS~~~a 154 (426)
+.+.+.+-|++|.-||=|+-..+
T Consensus 37 ~~i~~~~pdgiiLS~GPg~P~~~ 59 (192)
T PRK05670 37 EEIEALAPDAIVLSPGPGTPAEA 59 (192)
T ss_pred HHHHHCCCCEEEECCCCCCHHHC
T ss_conf 99985098989999999993660
No 251
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=22.53 E-value=50 Score=13.18 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHHHHHCCCC-CEEEEE-CCCCCC
Q ss_conf 999999998639988999-48825789999999999851899-628852-222347
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHT-IGGDDTNTTACDLLRYLKEKNYN-ITVVGL-PKTIDN 179 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~-IGGdgS~~~a~~L~e~~~~~~~~-i~vigi-PKTIDN 179 (426)
+|.+.+.+++-+.+++|+ .|| +++..||..+.+. + ++|+|= |.+||.
T Consensus 637 ~E~Vm~I~e~E~~~GVIVq~GG----Qtp~nlA~~L~~~--GG~~iLGTS~~~ID~ 686 (1089)
T TIGR01369 637 FEDVMNIIELEKPEGVIVQFGG----QTPLNLAKELEEA--GGVPILGTSPESIDR 686 (1089)
T ss_pred CCCCEEHEEECCCCEEEEECCC----HHHHHHHHHHHHC--CCCEEECCCHHHHHH
T ss_conf 0310011000586679997487----3267899999970--893173688578751
No 252
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=22.30 E-value=50 Score=13.15 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=14.9
Q ss_pred HHHHCCHHHCCCCCCEEEEEEEECCCCCHH
Q ss_conf 987332121034876337999836877514
Q gi|254780227|r 14 WILTGVLSFLEKDMVAHKVAFLTAGGIAPC 43 (426)
Q Consensus 14 ~~~~g~~~~~~~~~~~krI~IltsGG~aPG 43 (426)
|.|+-....-+|+--++-|+.+|+|| |||
T Consensus 13 CfKA~ne~~g~Fe~yv~viaf~tCGg-CpG 41 (101)
T COG5561 13 CFKAANEGEGKFEEYVRVIAFITCGG-CPG 41 (101)
T ss_pred HHHHHHCCCCCCCCCEEEEEEEECCC-CCC
T ss_conf 88887515653300077899997379-986
No 253
>PTZ00063 histone deacetylase; Provisional
Probab=22.22 E-value=51 Score=13.14 Aligned_cols=21 Identities=14% Similarity=-0.019 Sum_probs=10.8
Q ss_pred HHHHHCCCCEEEEECCHHHHH
Q ss_conf 999863998899948825789
Q gi|254780227|r 132 HHLMQSGVTILHTIGGDDTNT 152 (426)
Q Consensus 132 ~~l~~~~Id~Li~IGGdgS~~ 152 (426)
..++.+.=+++|+=.|-||+.
T Consensus 245 ~v~~~f~P~~IVlQcGaDsl~ 265 (439)
T PTZ00063 245 KCVEVYRPGAIVLQCGADSLT 265 (439)
T ss_pred HHHHHHCCCEEEEECCCCCCC
T ss_conf 999986999799946765446
No 254
>pfam10479 FSA_C Fragile site-associated protein C-terminus. This is the conserved C-terminal half of the protein KIAA1109 which is the fragile site-associated protein FSA. Genome-wide-association studies showed this protein to linked to the susceptibility to coeliac disease. The protein may also be associated with polycystic kidney disease.
Probab=22.21 E-value=51 Score=13.14 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4899999999871874318841886123558986799999999
Q gi|254780227|r 326 VGSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKM 368 (426)
Q Consensus 326 i~~~La~~i~~~~~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~l 368 (426)
++.+--+.+-++++....|.++|=++|||.. .+.|..+|..+
T Consensus 568 ieP~gvDyILqKLGF~hARtTIPKwlQRG~m-DPLDkvlA~l~ 609 (615)
T pfam10479 568 IEPYGVDYILNKLGFSHARTTIPKWLQRGVM-DPLDKVLAASV 609 (615)
T ss_pred CCCCCHHHHHHHHCCCCCCCCCHHHHHCCCC-CHHHHHHHHHH
T ss_conf 6886188998864755000346288871377-87899999999
No 255
>pfam06792 UPF0261 Uncharacterized protein family (UPF0261).
Probab=21.66 E-value=52 Score=13.07 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=47.1
Q ss_pred CCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHH-HHHCC
Q ss_conf 99789998383660107991304626988887464078740033678886530111012345674569999999-98639
Q gi|254780227|r 60 PKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHH-LMQSG 138 (426)
Q Consensus 60 ~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ 138 (426)
.|.+++-+.-|..|--.. -.+.+.++|.. .+|+-+..-|..-.+- +..+ . -..-..+.+.. +++-+
T Consensus 27 ~G~~v~~iDvg~~g~p~~----~~dis~~~Va~---~~g~~~~~~~~~~drg-~a~~----~-M~~ga~~~v~~l~~~g~ 93 (403)
T pfam06792 27 QGLEVLVIDVSVLGPPSF----PVDISAEEVAE---AAGSSIEAVIAGGDRG-EAMA----A-MARGAAALVSELYDEGK 93 (403)
T ss_pred CCCCEEEEECCCCCCCCC----CCCCCHHHHHH---HCCCCHHHHHCCCCHH-HHHH----H-HHHHHHHHHHHHHHCCC
T ss_conf 799589998158889989----99869899998---6599878974588789-9999----9-99999999998886588
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 988999488257899999999998518996288522223
Q gi|254780227|r 139 VTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI 177 (426)
Q Consensus 139 Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI 177 (426)
|++++.+||-+--.-+....+ .+| +|+||=|
T Consensus 94 i~Gvi~lGGs~GT~lat~aMr-------~LP-iG~PK~m 124 (403)
T pfam06792 94 IAGVIGLGGSGGTALATPAMR-------ALP-IGVPKLM 124 (403)
T ss_pred EEEEEEECCCCHHHHHHHHHH-------HCC-CCCCEEE
T ss_conf 008998347741799999998-------566-6787167
No 256
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=21.60 E-value=52 Score=13.06 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=66.2
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 33799983687751489999999999998569978999838366010799130462698888746407874003367888
Q gi|254780227|r 29 AHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKL 108 (426)
Q Consensus 29 ~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~ 108 (426)
.|||.|...|-- ++| ++++++.+ |.+.+.++-=- + -....+...+.....|+. +..
T Consensus 1 i~kvLIanrGei------A~r-i~rt~re~--gi~~v~i~s~~------d---~~s~~~~~ad~~~~~~~~---~~~--- 56 (109)
T pfam00289 1 IKKVLVANRGEI------AVR-IIRALREL--GIETVAVNSNP------D---TVSTHVRLADEAYFLGPG---PAS--- 56 (109)
T ss_pred CCEEEEECCCHH------HHH-HHHHHHHC--CCCEEEEECHH------H---CCCHHHHHHHHHHHCCCC---CCC---
T ss_conf 948999888799------999-99999986--99799996334------4---152256650576534799---832---
Q ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 6530111012345674569999999986399889994882578999999999985189962885222
Q gi|254780227|r 109 TNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPK 175 (426)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPK 175 (426)
+..-+.+.+++..++.++|+ +-+|-|-++-...|++.+.+. ++..||-|.
T Consensus 57 -------------~~Yl~~~~Ii~ia~~~~~~a--ihpGyGflsEn~~fa~~~~~~--Gi~fiGPs~ 106 (109)
T pfam00289 57 -------------ESYLNIERILDIAEKEGADA--IHPGYGFLSENAEFAEACEKA--GITFIGPSP 106 (109)
T ss_pred -------------CCCCCHHHHHHHHHHHCCCE--EECCCCCCCCCHHHHHHHHHC--CCEEECCCH
T ss_conf -------------11137999999999818896--877976233599999999988--898999583
No 257
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=21.60 E-value=52 Score=13.06 Aligned_cols=70 Identities=19% Similarity=-0.007 Sum_probs=46.1
Q ss_pred CCCEEEEECC-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-------CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9988999488-25789999999999851899628852222347722-------2114633565999999999999987
Q gi|254780227|r 138 GVTILHTIGG-DDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII-------PIHQSLGALTAAQVSACFFDNISNE 207 (426)
Q Consensus 138 ~Id~Li~IGG-dgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~-------~td~tiGfdTA~~~~a~~i~~l~~~ 207 (426)
.|-+|++||- |=|..+|++|-...--...-==.+..|+||+|=+. ..+..|=|..++....+-+|.|...
T Consensus 393 ~~pGLFa~GEc~fs~HGANRLGAnsLl~a~~dG~~~lP~ti~~~~~~~~~~~~~~~~~P~~~~~~~~~~~r~d~L~~~ 470 (620)
T TIGR01811 393 TVPGLFAAGECDFSDHGANRLGANSLLSALADGYFVLPATIENYLGLELSSEDLDEDAPEFEEALAEEQDRLDRLLKM 470 (620)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 887513530167122453155699998863497576302577553024577767644408999999899888888615
No 258
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=21.54 E-value=52 Score=13.05 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=19.7
Q ss_pred CEEEEECCHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 88999488257899-9999999985189962885222234772
Q gi|254780227|r 140 TILHTIGGDDTNTT-ACDLLRYLKEKNYNITVVGLPKTIDNDI 181 (426)
Q Consensus 140 d~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~vigiPKTIDNDi 181 (426)
.-.+++=|||++.. ...|.... .+ +++++.| =++|.-
T Consensus 69 ~~Vv~i~GDG~f~m~~~El~Ta~-r~--~l~vi~v--V~NN~~ 106 (183)
T cd02005 69 RRVILLVGDGSFQMTVQELSTMI-RY--GLNPIIF--LINNDG 106 (183)
T ss_pred CCEEEEECCHHHHHHHHHHHHHH-HH--CCCEEEE--EEECCC
T ss_conf 84799956736762088999999-82--9981999--998994
No 259
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=21.25 E-value=53 Score=13.01 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=14.5
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 3379998368775148999999999
Q gi|254780227|r 29 AHKVAFLTAGGIAPCLSSIIGMLIN 53 (426)
Q Consensus 29 ~krI~IltsGG~aPG~N~~I~~iv~ 53 (426)
++||.|+=|||= =||..|.+.+
T Consensus 2 ~MkVLViGsGGR---EHAla~kl~~ 23 (435)
T PRK06395 2 TMKVMLVGSGGR---EDAIARAIKR 23 (435)
T ss_pred CCEEEEECCCHH---HHHHHHHHHC
T ss_conf 877999887889---9999999855
No 260
>pfam03159 XRN_N XRN 5'-3' exonuclease N-terminus. This family aligns residues towards the N-terminus of several proteins with multiple functions. The members of this family all appear to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, the aligned region may be necessary for 5'-3' exonuclease function. The family also contains several Xrn1 and Xrn2 proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p function in the degradation and processing of several classes of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme catalysing cytoplasmic mRNA degradation in multiple decay pathways, whereas Xrn2p/Rat1p functions in the processing of rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus.
Probab=21.14 E-value=53 Score=13.00 Aligned_cols=18 Identities=17% Similarity=-0.042 Sum_probs=8.5
Q ss_pred CCCEEEEECCHHHHHHHH
Q ss_conf 998899948825789999
Q gi|254780227|r 138 GVTILHTIGGDDTNTTAC 155 (426)
Q Consensus 138 ~Id~Li~IGGdgS~~~a~ 155 (426)
+=.-+++|.=||-.--|.
T Consensus 74 ~P~kllyiaiDGVaP~AK 91 (236)
T pfam03159 74 RPRKLLYMAIDGVAPRAK 91 (236)
T ss_pred CCCEEEEEEECCCCCHHH
T ss_conf 855259998506787488
No 261
>KOG2636 consensus
Probab=21.08 E-value=53 Score=13.02 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=15.5
Q ss_pred EEECCC-CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 884188-6123558986799999999999999
Q gi|254780227|r 344 IVQKSG-YFARSAPSGSEDLSLIKKMVVLAVD 374 (426)
Q Consensus 344 ~~~~lG-y~qRgg~Ps~~Dr~~a~~lG~~Av~ 374 (426)
+|-+.| |.-+| |-+|||-++..=-.+-++
T Consensus 403 ~CEICGNy~Y~G--rkaF~RHF~EwRH~hGmr 432 (497)
T KOG2636 403 NCEICGNYVYKG--RKAFDRHFNEWRHAHGMR 432 (497)
T ss_pred CEEECCCCCCCC--CHHHHHHHHHHHHHHCCE
T ss_conf 013346743448--278998757888761464
No 262
>CHL00085 ycf24 putative ABC transporter
Probab=21.06 E-value=36 Score=14.08 Aligned_cols=124 Identities=9% Similarity=-0.020 Sum_probs=64.6
Q ss_pred HHHHHHHHHHCCCCE-----EEEECC---HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999999998639988-----999488---257899999999998518996288522223477222114633565999999
Q gi|254780227|r 127 LEVSAHHLMQSGVTI-----LHTIGG---DDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSA 198 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~-----Li~IGG---dgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a 198 (426)
-+.+.++++++||-- |--.+= .+|-.-...+.+.++++ |+=+ ..+++|++..-
T Consensus 106 p~eik~tfekLGip~~e~k~l~gv~vda~~dS~~V~~~~~~~L~~~------------------GVIf-~~~~~A~~~~p 166 (485)
T CHL00085 106 DPELLSTFEKLGIPLNEQKRLSNVAVDAVFDSVSIGTTFKEELIKA------------------GVIF-CSISEAINKYP 166 (485)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCEEEEECHHHHHHHC------------------CEEE-ECHHHHHHHHH
T ss_conf 9999999987188356666642001200205055320127899979------------------9599-56899998708
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf 999999987751666169999769874289999874014332310111111100014576523287865598999999--
Q gi|254780227|r 199 CFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIER-- 276 (426)
Q Consensus 199 ~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~-- 276 (426)
+.+..-.-++.... .--+.||++|+-++-.. +|+|...--..++...
T Consensus 167 elv~ky~g~~v~~~-----------d~kfaALn~A~~sgG~F--------------------vYVPkgV~v~~Pl~~~f~ 215 (485)
T CHL00085 167 ELIKKYLGSVVPIG-----------DNYFAALNSAVFSDGSF--------------------CYIPKDTKCPLELSTYFR 215 (485)
T ss_pred HHHHHHHHCCCCCC-----------CCHHHHHHHHHHCCCEE--------------------EEECCCCCCCCCEEEEEE
T ss_conf 99999861543887-----------44689999998459769--------------------984077111552079999
Q ss_pred HHH-HHHCCCCEEEEEECCCCCCCC
Q ss_conf 999-850289538995042111111
Q gi|254780227|r 277 LSK-VMEKKGSVAIFVSEGACRDVI 300 (426)
Q Consensus 277 i~~-~~~~~~~~vIVvsEG~~~~~~ 300 (426)
+.. ....-.+.+||+-||+....+
T Consensus 216 i~~~~~~qf~htLIIaeegS~v~~i 240 (485)
T CHL00085 216 INNEESGQFERTLIIADENSYVSYL 240 (485)
T ss_pred ECCCCCCCCCEEEEEECCCCEEEEE
T ss_conf 7577567774479996579779998
No 263
>PRK09224 threonine dehydratase; Reviewed
Probab=20.97 E-value=54 Score=12.98 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=70.5
Q ss_pred HHHHHHHHC--CCCEE-EEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC------------CCCC--------
Q ss_conf 999999863--99889-994882578999999999985189962885222234772------------2211--------
Q gi|254780227|r 129 VSAHHLMQS--GVTIL-HTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI------------IPIH-------- 185 (426)
Q Consensus 129 ~~~~~l~~~--~Id~L-i~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi------------~~td-------- 185 (426)
...+-+++. .+|++ +.+||.|-..+... +++..+.+++||||---=.+.+ +-++
T Consensus 158 iglEIleQ~~~~~D~V~vpVGGGGLiaGia~---~~K~~~P~ikVIGVEpe~a~~m~~Sl~aG~~v~l~~v~~fADG~AV 234 (504)
T PRK09224 158 IAMEILQQHPHPLDAIFVPVGGGGLIAGVAA---YIKQLRPEIKVIGVEPEDSACLKAALEAGERVELPQVGLFADGVAV 234 (504)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHH---HHHHHCCCCEEEEEEECCCHHHHHHHHCCCEEECCCCCCCCCCCCC
T ss_conf 9999998576888889995584378899999---9986399873899995687579999976975654766743576200
Q ss_pred CCCCHHHH---H-----------HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH----------------HH
Q ss_conf 46335659---9-----------999999999998775166616999976987428999987----------------40
Q gi|254780227|r 186 QSLGALTA---A-----------QVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSA----------------HC 235 (426)
Q Consensus 186 ~tiGfdTA---~-----------~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~a----------------la 235 (426)
..+|-.|= - ..++.+|..+..+ .|+ |+| -+|=|++++- +.
T Consensus 235 ~~vG~~tF~i~k~~VDdvv~V~~deIcaAikdi~e~-----~r~-I~E----PaGAlalAglk~y~~~~~~~~~~~v~i~ 304 (504)
T PRK09224 235 KRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFED-----TRS-IAE----PAGALALAGLKKYVAQHGIKGETLVAIL 304 (504)
T ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHH-----CCE-EEC----CHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 667678998875248962798878999999999983-----676-534----6189999999999975576646279972
Q ss_pred CCCCCCCHHHHHHHHHHC---CCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 143323101111111000---145765232878655989999999998
Q gi|254780227|r 236 YLNMIQDRNYIDGFIFSP---DFKGIDGVYLPEMSFNLEVEIERLSKV 280 (426)
Q Consensus 236 ~ga~~~~i~~~~~~~~~~---~~~~~d~iliPE~~~~~~~~~~~i~~~ 280 (426)
||||+-+-..-....+.. .....-.+-|||.|=++..|++.+..+
T Consensus 305 sGaN~nF~rLr~v~era~~Ge~re~~~~v~ipe~~Gsf~~f~~~~~~r 352 (504)
T PRK09224 305 SGANMNFDRLRYVAERAELGEQREALLAVTIPEEPGSFLKFCELLGGR 352 (504)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 367667124478898864054424899996589997799999996576
No 264
>PRK00074 guaA GMP synthase; Reviewed
Probab=20.95 E-value=21 Score=15.61 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=27.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf 999836877514899999999999985699789998383660107
Q gi|254780227|r 32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLL 76 (426)
Q Consensus 32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~ 76 (426)
-||+.||||....+.-.-.+-... ++-+.-++|+.+|.+-+.+
T Consensus 49 kgIILSGGP~SV~~~~aP~~d~~i--f~l~IPILGICYG~Qlia~ 91 (513)
T PRK00074 49 KGIILSGGPASVYEEGAPRADPEI--FELGVPVLGICYGMQLMAH 91 (513)
T ss_pred CEEEECCCCCCCCCCCCCCCCHHH--HHCCCCEEEECHHHHHHHH
T ss_conf 789988999636899998899899--8269986997588999999
No 265
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=20.91 E-value=54 Score=12.97 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 1234567456999999998639988999488257899999999998518996288522
Q gi|254780227|r 117 RGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLP 174 (426)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiP 174 (426)
.-....+.++.+++.+.+...+....++|||. -.+..+++.+...+..+.+|-.-
T Consensus 115 ~V~~lr~~~Da~~i~~~l~~~~~k~vvViGgG---~IGlE~A~~l~~~G~~Vtvve~~ 169 (427)
T TIGR03385 115 ITFTLRNLEDTDAIKQYIDANKVDRVVIIGGG---YIGLEMVEALRERGKNVTLIHRS 169 (427)
T ss_pred CEEEECCHHHHHHHHHHHHCCCCCEEEEECCC---HHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 88997999999999998750799889999963---99999999999769989999846
No 266
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=20.88 E-value=54 Score=12.97 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=57.7
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV 106 (426)
Q Consensus 27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~ 106 (426)
|+.+||.|..|||. -+++.+.. .. ..|++|+|+. +++ |.+ .++ +.|-
T Consensus 1 ~~~~kV~v~mSGGV----DSSVaA~l---Lk-~QGyeViGl~------m~~---------~~~------~~~---~~C~- 47 (356)
T COG0482 1 MKKKKVLVGMSGGV----DSSVAAYL---LK-EQGYEVIGLF------MKN---------WDE------DGG---GGCC- 47 (356)
T ss_pred CCCCEEEEECCCCH----HHHHHHHH---HH-HCCCEEEEEE------EEE---------ECC------CCC---CCCC-
T ss_conf 98767999905777----89999999---99-7697499999------996---------414------788---8677-
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH-HHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 8865301110123456745699999999863998899948825789999999999-851899628852222347722211
Q gi|254780227|r 107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYL-KEKNYNITVVGLPKTIDNDIIPIH 185 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~-~~~~~~i~vigiPKTIDNDi~~td 185 (426)
.++++.-+...+++++|...++-== -.-=...-+++ .+.+.+ +|--=|+.. .
T Consensus 48 ----------------s~~d~~da~~va~~LGIp~~~vdf~---~~y~~~V~~~f~~~Y~~G-------~TPNPci~C-N 100 (356)
T COG0482 48 ----------------SEEDLRDAERVADQLGIPLYVVDFE---KEFWNKVFEYFLAEYKAG-------KTPNPCILC-N 100 (356)
T ss_pred ----------------CHHHHHHHHHHHHHHCCCEEEECHH---HHHHHHHHHHHHHHHHCC-------CCCCCCHHC-C
T ss_conf ----------------2567899999999809955998468---998888888778998579-------999965104-8
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 46335659999999
Q gi|254780227|r 186 QSLGALTAAQVSAC 199 (426)
Q Consensus 186 ~tiGfdTA~~~~a~ 199 (426)
..+=|..+.+++.+
T Consensus 101 ~~iKF~~~l~~a~~ 114 (356)
T COG0482 101 KEIKFKALLDYAKE 114 (356)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 78899999999997
No 267
>pfam07287 DUF1446 Protein of unknown function (DUF1446). This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=20.81 E-value=54 Score=12.96 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 56999999998639988999488257899999999998518996288522
Q gi|254780227|r 125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLP 174 (426)
Q Consensus 125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiP 174 (426)
+.++.++..+.+++|.-+.--||-....-|.++.+..++.+.+++|-.|-
T Consensus 58 ~~l~~~L~~~~~kgikii~NaGa~NP~~~a~~v~~~a~~~Gl~lkVA~V~ 107 (362)
T pfam07287 58 ERLEPVLPLCAEKGIRIVTNAGALNPRGAAEAVRELARELGLDLKVAVVE 107 (362)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999999999729389952887897999999999999779995399997
No 268
>PRK12311 rpsB 30S ribosomal protein S2; Provisional
Probab=20.75 E-value=54 Score=12.95 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC------CCCCCCCCCCCCCHHHHHHHH
Q ss_conf 699999999863--998899948825789999999999851899628852222------347722211463356599999
Q gi|254780227|r 126 PLEVSAHHLMQS--GVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKT------IDNDIIPIHQSLGALTAAQVS 197 (426)
Q Consensus 126 ~~~~~~~~l~~~--~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT------IDNDi~~td~tiGfdTA~~~~ 197 (426)
.+++....++.. -=|.++++.-+ .-...+.|. +..+||||+|--| ||-=||+.|-++ .|++.+
T Consensus 145 KL~k~lgGIk~M~~lPDlvfViD~~---kE~iAV~EA---~kLgIPvIaIvDTN~dP~~IdYpIPgNDDai---rsI~L~ 215 (332)
T PRK12311 145 KLDRSLGGIKDMGGLPDLIFVIDTN---KEDIAIQEA---QRLGIPVAAIVDTNCDPKGITYLVPGNDDAG---RAIALY 215 (332)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCC---CCHHHHHHH---HHCCCCEEEEEECCCCCCCCCCCCCCCCCHH---HHHHHH
T ss_conf 9998546254205599989996897---338999999---9809798999738999865775684865589---999999
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999877516
Q gi|254780227|r 198 ACFFDNISNERSAT 211 (426)
Q Consensus 198 a~~i~~l~~~A~s~ 211 (426)
+..+.+...+-.+.
T Consensus 216 c~lia~A~l~G~~~ 229 (332)
T PRK12311 216 CDLIARAAIDGISR 229 (332)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999987
No 269
>PRK06180 short chain dehydrogenase; Provisional
Probab=20.70 E-value=54 Score=12.94 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=48.2
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV 106 (426)
Q Consensus 27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~ 106 (426)
|+.+|+.++|.++ .|+=.++. +.+.. .|++|++.-.--+. + +.+.. ..++..+.- ..
T Consensus 1 M~~~KvvlITGas--sGIG~aiA---~~l~~--~G~~Vi~~~R~~~~--------l-----~~l~~--~~~~~~~~~-~~ 57 (277)
T PRK06180 1 MASMKTWLITGVS--SGFGRALA---QAALA--AGHRVVGTVRSAAA--------R-----RDFEA--LHPGRALAR-VL 57 (277)
T ss_pred CCCCCEEEECCCC--CHHHHHHH---HHHHH--CCCEEEEEECCHHH--------H-----HHHHH--HCCCCEEEE-EE
T ss_conf 9999889991787--39999999---99998--79999999899999--------9-----99998--679957999-98
Q ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHH
Q ss_conf 8865301110123456745699999999863--99889994882578
Q gi|254780227|r 107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQS--GVTILHTIGGDDTN 151 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~Id~Li~IGGdgS~ 151 (426)
+.-+++.++.+++...+. .||.||-.-|-+..
T Consensus 58 -------------Dvtd~~~v~~~v~~~~~~~G~iDvLVNNAG~~~~ 91 (277)
T PRK06180 58 -------------DVTDFDAIDGVVADAEATVGPIDVLVNNAGYGHE 91 (277)
T ss_pred -------------ECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf -------------3799999999999999981998699989977888
No 270
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=20.60 E-value=55 Score=12.93 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 222234445443556648999999998718
Q gi|254780227|r 310 KIKRDSFGHILLDKMNVGSWFADKFANMIK 339 (426)
Q Consensus 310 ~~~~d~~g~~~l~~~~i~~~La~~i~~~~~ 339 (426)
..-.+..|+..+.....|..|+-.+--.+.
T Consensus 184 ~~~~~~~g~~~la~aGsGDvLaGii~~lla 213 (254)
T cd01171 184 RVYVNPTGNPGLATGGSGDVLAGIIAALLA 213 (254)
T ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 889807999878888752789999999998
No 271
>PRK09201 amidase; Provisional
Probab=20.55 E-value=55 Score=12.92 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=6.6
Q ss_pred HHHHHHHCCCCC
Q ss_conf 999998448898
Q gi|254780227|r 415 FSDILRHTGQKS 426 (426)
Q Consensus 415 ~~~~l~~~gq~~ 426 (426)
|....+.+|+|+
T Consensus 406 ~t~~~n~~G~Pa 417 (465)
T PRK09201 406 FTQPISFIGLPV 417 (465)
T ss_pred HHHHHHHHCCCE
T ss_conf 999999968984
No 272
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=20.51 E-value=55 Score=12.92 Aligned_cols=29 Identities=17% Similarity=-0.020 Sum_probs=19.0
Q ss_pred EEEEEE--CCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 799983--68775148999999999999856
Q gi|254780227|r 31 KVAFLT--AGGIAPCLSSIIGMLINHYNKIL 59 (426)
Q Consensus 31 rI~Ilt--sGG~aPG~N~~I~~iv~~a~~~~ 59 (426)
|||+++ ||..++-.-...+++-.+...+|
T Consensus 1 kIG~~~plSG~~a~~G~~~~~g~~lav~~iN 31 (334)
T cd06342 1 KIGVAGPLTGPNAALGKDIKNGAQLAVEDIN 31 (334)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9678727878515433999999999999998
No 273
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=20.20 E-value=56 Score=12.88 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=45.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999986399889994882578999999999985189962-8852222347722211-4633565999999999999
Q gi|254780227|r 127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNIT-VVGLPKTIDNDIIPIH-QSLGALTAAQVSACFFDNI 204 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~-vigiPKTIDNDi~~td-~tiGfdTA~~~~a~~i~~l 204 (426)
-...++.+.+..+|++|+.+..-+-.....+. + .++ +|. +|...++.+ .|+++|-. .-...+++.|
T Consensus 104 e~~~~~~l~~~~vdg~Ii~~~~~~~~~~~~~~---~----~~p~~vl----~~~~~~~~~~~~V~~Dn~-~g~~~a~~~L 171 (346)
T PRK10401 104 ERHAIEVLIRQRCNALIVHSKALSDDELAQFM---D----QIPGMVL----INRIVPGYAHRCVCLDNV-SGARMATRML 171 (346)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH---H----CCCCEEE----ECCCCCCCCCCEEEECHH-HHHHHHHHHH
T ss_conf 99999999864885499946878979999999---6----2996899----888788888988994669-9999999999
Q ss_pred HHHHHHCCCCEEEEEE-CC------CCCCHHHHH
Q ss_conf 9877516661699997-69------874289999
Q gi|254780227|r 205 SNERSATPRSLIIHEV-MG------RNCGWLTAY 231 (426)
Q Consensus 205 ~~~A~s~~~~~~iVEv-MG------R~aG~LAl~ 231 (426)
.. .. |+++.++-- .+ |..||....
T Consensus 172 ~~--~G-hrrI~~i~~~~~~~~~~~R~~G~~~al 202 (346)
T PRK10401 172 LN--NG-HQRIGYLSSSHGIEDDAMRKAGWLSAL 202 (346)
T ss_pred HH--CC-CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 96--29-982899947988716899999999999
No 274
>PRK13121 consensus
Probab=20.17 E-value=56 Score=12.87 Aligned_cols=149 Identities=15% Similarity=0.217 Sum_probs=75.9
Q ss_pred HHHHHHHHHHCCCCEEE--EECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC---CCCC-C-CCCCCCCHHHHHHHHHH
Q ss_conf 99999999863998899--9488257899999999998518996288522223---4772-2-21146335659999999
Q gi|254780227|r 127 LEVSAHHLMQSGVTILH--TIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI---DNDI-I-PIHQSLGALTAAQVSAC 199 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~Li--~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI---DNDi-~-~td~tiGfdTA~~~~a~ 199 (426)
+++..+.+++.+=.+|+ +..||.+.....++...+.+.+.++-=+|+|=+= |.-+ + -.+..+--.+..+.+-+
T Consensus 4 i~~~f~~~k~~~~~ali~y~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~ 83 (265)
T PRK13121 4 IQQTFAALAAQGRKALIPFITAGDPDPAKTVELMHALVEGGADVIELGVPFSDPMADGPVIQRASERALAHGVSLRQVLA 83 (265)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 89999999976995589887071899899999999999769999997898899776589999999999977998467799
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999987751666169999769874289999874014332310111111100014576523287865598999999999
Q gi|254780227|r 200 FFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSK 279 (426)
Q Consensus 200 ~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~ 279 (426)
.+..++... .+-.+ -+|+=..-.... ++ ..+......-+.|-+++|..|++.. +.+..
T Consensus 84 ~~~~~r~~~--~~~Pi---vlM~Y~N~i~~y--G~------------e~F~~~~~~aGvdGlIipDLP~eE~---~~~~~ 141 (265)
T PRK13121 84 MVKEFRETN--QTTPV---VLMGYANPIERM--GY------------DAFAAAARAAGVDGVLVVDYPPEEC---EEFAA 141 (265)
T ss_pred HHHHHHCCC--CCCCE---EEEEHHHHHHHH--HH------------HHHHHHHHHCCCCEEECCCCCHHHH---HHHHH
T ss_conf 999831037--99998---986214599997--19------------9999999872987343489998999---99999
Q ss_pred HHHCCCCE-EEEEECCCCC
Q ss_conf 85028953-8995042111
Q gi|254780227|r 280 VMEKKGSV-AIFVSEGACR 297 (426)
Q Consensus 280 ~~~~~~~~-vIVvsEG~~~ 297 (426)
..++.+-. +-++|.....
T Consensus 142 ~~~~~gl~~I~lvaPtt~~ 160 (265)
T PRK13121 142 KMRAAGIDPIFLLAPTSTD 160 (265)
T ss_pred HHHHCCCCEEEEECCCCCH
T ss_conf 9986599668995899989
No 275
>PRK13112 consensus
Probab=20.16 E-value=56 Score=12.87 Aligned_cols=149 Identities=16% Similarity=0.239 Sum_probs=79.3
Q ss_pred HHHHHHHHHHCCCCEE--EEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC---CCCC-C-CCCCCCCHHHHHHHHHH
Q ss_conf 9999999986399889--99488257899999999998518996288522223---4772-2-21146335659999999
Q gi|254780227|r 127 LEVSAHHLMQSGVTIL--HTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI---DNDI-I-PIHQSLGALTAAQVSAC 199 (426)
Q Consensus 127 ~~~~~~~l~~~~Id~L--i~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI---DNDi-~-~td~tiGfdTA~~~~a~ 199 (426)
++...+.+++.+=-+| ++..||.+......+.+.+.+.+.++-=+|||=+= |.-+ + -.+..+--.+.++.+-+
T Consensus 5 i~~~F~~~k~~~r~ali~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~~~~~~~ 84 (279)
T PRK13112 5 IDTRFAELKAEGRPALVTYFMGGDPDLETSLKIMKALPKAGADIIELGMPFSDPMADGPAIQAAGLRALKAGQTLAKTLY 84 (279)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999976995589886073899789999999998779998997899898666579999999999976996889999
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999987751666169999769874289999874014332310111111100014576523287865598999999999
Q gi|254780227|r 200 FFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSK 279 (426)
Q Consensus 200 ~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~ 279 (426)
.+.+++..-... .+ -+||=..-.... + ...+......-+.|-++||+.|++....+ ..
T Consensus 85 ~~~~ir~~~~~~--Pi---vlM~Y~N~i~~~--G------------~e~F~~~~~~aGvdGvIipDLP~eE~~~~---~~ 142 (279)
T PRK13112 85 LAREFRKDDDTT--PI---VLMGYYNPIYIY--G------------VERFLTDAKAAGVDGLIVVDLPPEMDAEL---CI 142 (279)
T ss_pred HHHHHHCCCCCC--CE---EEEEECHHHHHH--C------------HHHHHHHHHHCCCCEEEECCCCHHHHHHH---HH
T ss_conf 999851348998--87---998512499884--7------------99999999973998798469997888999---99
Q ss_pred HHHCCCC-EEEEEECCCCC
Q ss_conf 8502895-38995042111
Q gi|254780227|r 280 VMEKKGS-VAIFVSEGACR 297 (426)
Q Consensus 280 ~~~~~~~-~vIVvsEG~~~ 297 (426)
..++++- .+-.++.....
T Consensus 143 ~~~~~~i~~I~lvaPtt~~ 161 (279)
T PRK13112 143 PAMKAGINFIRLATPTTDD 161 (279)
T ss_pred HHHHCCCCEEEEECCCCCH
T ss_conf 9985783469982589989
Done!