Query         gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 426
No_of_seqs    135 out of 1583
Neff          7.0 
Searched_HMMs 39220
Date          Mon May 23 21:06:57 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780227.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK06555 pyrophosphate--fructo 100.0       0       0  778.1  39.6  400   27-426     1-400 (403)
  2 TIGR02483 PFK_mixed phosphofru 100.0       0       0  752.5  28.3  330   31-398     1-336 (339)
  3 PRK06830 diphosphate--fructose 100.0       0       0  727.6  35.4  368   13-426    63-437 (442)
  4 PTZ00286 6-phospho-1-fructokin 100.0       0       0  686.8  35.4  364   14-423    80-450 (486)
  5 TIGR02482 PFKA_ATP 6-phosphofr 100.0       0       0  695.6  26.6  297   31-398     1-299 (302)
  6 cd00363 PFK Phosphofructokinas 100.0       0       0  654.6  34.9  327   30-418     1-336 (338)
  7 PRK03202 6-phosphofructokinase 100.0       0       0  654.3  33.9  315   29-417     2-317 (323)
  8 cd00763 Bacterial_PFK Phosphof 100.0       0       0  650.7  33.8  312   30-419     1-313 (317)
  9 TIGR02478 6PF1K_euk 6-phosphof 100.0       0       0  645.9  23.1  334   30-423     1-371 (777)
 10 TIGR02477 PFKA_PPi diphosphate 100.0       0       0  642.6  22.1  350   25-391    70-471 (566)
 11 cd00764 Eukaryotic_PFK Phospho 100.0       0       0  620.8  30.7  336   28-423     2-363 (762)
 12 COG0205 PfkA 6-phosphofructoki 100.0       0       0  619.4  31.0  306   28-400     1-312 (347)
 13 pfam00365 PFK Phosphofructokin 100.0       0       0  591.1  30.8  278   30-378     1-279 (279)
 14 cd00764 Eukaryotic_PFK Phospho 100.0       0       0  585.8  31.6  350    6-420   365-735 (762)
 15 PRK07085 diphosphate--fructose 100.0       0       0  543.4  31.3  376   29-420    72-513 (557)
 16 cd00765 Pyrophosphate_PFK Phos 100.0       0       0  540.6  29.9  377   28-421    71-515 (550)
 17 TIGR02478 6PF1K_euk 6-phosphof 100.0       0       0  536.9  31.0  356    3-420   373-767 (777)
 18 PTZ00287 6-phosphofructokinase 100.0       0       0  542.6  25.0  379   25-419   175-603 (1439)
 19 PTZ00287 6-phosphofructokinase 100.0       0       0  434.9  22.7  357   30-404   855-1291(1439)
 20 KOG2440 consensus              100.0       0       0  351.1  18.1  298   34-396     1-316 (666)
 21 KOG2440 consensus              100.0 3.7E-43       0  297.9   1.6  387   15-426   106-533 (666)
 22 pfam01513 NAD_kinase ATP-NAD k  96.2   0.025 6.4E-07   34.5   6.9   58  134-206    31-90  (243)
 23 PRK02155 ppnK inorganic polyph  95.9    0.15 3.8E-06   29.5  10.7  125   27-217     3-129 (291)
 24 PRK00561 ppnK inorganic polyph  95.6   0.032 8.2E-07   33.8   5.6   42  138-194    33-74  (259)
 25 PRK02645 ppnK inorganic polyph  94.7   0.088 2.3E-06   30.9   5.5  126   27-221     1-130 (304)
 26 PRK13337 putative lipid kinase  94.6    0.14 3.4E-06   29.7   6.2   88  123-223    43-131 (305)
 27 PRK09423 gldA glycerol dehydro  94.5    0.22 5.7E-06   28.3   7.2   53  124-181    70-122 (366)
 28 PRK03708 ppnK inorganic polyph  94.4   0.034 8.6E-07   33.7   2.8  120   30-217     1-122 (278)
 29 PRK01911 ppnK inorganic polyph  94.2   0.075 1.9E-06   31.4   4.3  128   30-220     1-130 (290)
 30 PRK04761 ppnK inorganic polyph  94.2   0.059 1.5E-06   32.1   3.7   41  136-191    23-63  (246)
 31 PRK04885 ppnK inorganic polyph  94.2    0.15 3.9E-06   29.4   5.8   66  128-206    18-92  (265)
 32 PRK02649 ppnK inorganic polyph  94.0   0.074 1.9E-06   31.4   4.0   66  137-217    67-134 (305)
 33 PRK03378 ppnK inorganic polyph  93.9   0.082 2.1E-06   31.1   4.0  129   27-221     3-134 (292)
 34 PRK03501 ppnK inorganic polyph  93.9    0.24 6.2E-06   28.1   6.3   80  127-220    19-109 (264)
 35 PRK04759 consensus              93.8    0.09 2.3E-06   30.9   4.0  125   28-217     4-130 (294)
 36 PRK01231 ppnK inorganic polyph  93.8    0.17 4.3E-06   29.2   5.4  113   28-206     3-117 (296)
 37 COG3199 Predicted inorganic po  93.8    0.11 2.9E-06   30.2   4.5   52  124-181    86-137 (355)
 38 PRK00861 putative lipid kinase  93.6    0.19 4.8E-06   28.8   5.4  133  126-296    45-183 (296)
 39 PRK13057 putative lipid kinase  93.6     0.5 1.3E-05   26.1   7.6   86  124-224    37-122 (287)
 40 TIGR00147 TIGR00147 conserved   93.5    0.43 1.1E-05   26.5   7.1  123   84-229    20-145 (316)
 41 PRK04539 ppnK inorganic polyph  93.5    0.12 3.1E-06   30.0   4.2  128   28-217     4-134 (296)
 42 PRK02231 ppnK inorganic polyph  93.3    0.13 3.4E-06   29.8   4.2   52  137-203    41-94  (272)
 43 PRK03372 ppnK inorganic polyph  93.2    0.13 3.3E-06   29.8   4.0  133   26-217     1-135 (303)
 44 pfam00465 Fe-ADH Iron-containi  92.6    0.45 1.2E-05   26.4   6.1   57  124-180    65-134 (312)
 45 PRK11914 diacylglycerol kinase  92.3    0.46 1.2E-05   26.3   5.8   60  125-192    49-108 (304)
 46 PRK10624 L-1,2-propanediol oxi  92.0    0.78   2E-05   24.8   6.7   54  124-177    72-140 (381)
 47 PRK13059 putative lipid kinase  92.0    0.56 1.4E-05   25.8   5.9   86  126-224    45-130 (294)
 48 PRK01185 ppnK inorganic polyph  90.6    0.28 7.3E-06   27.7   3.3   53  137-207    51-105 (272)
 49 PRK10586 hypothetical protein;  90.0     1.3 3.2E-05   23.5   6.2   58  124-187    73-130 (362)
 50 PRK09860 putative alcohol dehy  89.7     1.5 3.9E-05   22.9   6.6   53  124-176    74-139 (383)
 51 COG1454 EutG Alcohol dehydroge  89.4     1.6 4.1E-05   22.8   6.7   54  124-177    72-138 (377)
 52 cd06278 PBP1_LacI_like_2 Ligan  89.4     1.6 4.1E-05   22.8  10.6   80  127-219    43-122 (266)
 53 cd06299 PBP1_LacI_like_13 Liga  89.4     1.6 4.2E-05   22.8  10.8   80  126-219    43-123 (265)
 54 pfam01761 DHQ_synthase 3-dehyd  89.1    0.57 1.5E-05   25.7   3.9   67  123-195    62-131 (310)
 55 PRK13054 lipid kinase; Reviewe  88.7     1.4 3.5E-05   23.2   5.6   88  125-223    43-131 (299)
 56 COG0371 GldA Glycerol dehydrog  88.4     1.8 4.7E-05   22.4   6.1   55  123-182    69-123 (360)
 57 PRK09461 ansA cytoplasmic aspa  88.3     1.9 4.9E-05   22.3  11.0   60  124-185    65-127 (335)
 58 cd01542 PBP1_TreR_like Ligand-  88.3     1.9   5E-05   22.3  11.9   78  126-218    43-120 (259)
 59 PRK13055 putative lipid kinase  88.2     1.9 4.7E-05   22.4   6.0   59  126-191    47-106 (334)
 60 cd01574 PBP1_LacI Ligand-bindi  88.0       2 5.1E-05   22.2   6.9   81  125-219    43-123 (264)
 61 COG0061 nadF NAD kinase [Coenz  87.6    0.82 2.1E-05   24.7   3.9   55  137-208    54-108 (281)
 62 PRK00843 egsA NAD(P)-dependent  87.5     2.2 5.5E-05   22.0   6.7   54  124-182    74-127 (351)
 63 pfam02569 Pantoate_ligase Pant  87.4    0.97 2.5E-05   24.2   4.2   17  128-144    76-92  (280)
 64 TIGR01918 various_sel_PB selen  86.9     0.2 5.1E-06   28.6   0.4  109   26-147   122-235 (433)
 65 PRK00380 panC pantoate--beta-a  86.5     2.4 6.2E-05   21.7   5.8   38  206-243    14-52  (283)
 66 cd00560 PanC PanC  Pantoate-be  85.7     2.5 6.5E-05   21.5   5.6   29  212-240    21-50  (276)
 67 cd06273 PBP1_GntR_like_1 This   84.9     2.9 7.5E-05   21.1  10.8  125  126-285    43-177 (268)
 68 smart00046 DAGKc Diacylglycero  84.1     1.4 3.5E-05   23.2   3.6   49  134-182    45-93  (124)
 69 COG0414 PanC Panthothenate syn  83.8     3.2 8.2E-05   20.9   5.4   37  207-243    16-53  (285)
 70 pfam07355 GRDB Glycine/sarcosi  83.5    0.36 9.2E-06   27.0   0.5   50  122-172    64-116 (349)
 71 COG1597 LCB5 Sphingosine kinas  82.3     3.7 9.4E-05   20.5   5.3   70  125-203    45-117 (301)
 72 cd06293 PBP1_LacI_like_11 Liga  80.5     4.3 0.00011   20.1  10.6   81  125-219    42-123 (269)
 73 TIGR00018 panC pantoate--beta-  79.6     2.2 5.7E-05   21.9   3.3   71  194-265     7-97  (310)
 74 TIGR03394 indol_phenyl_DC indo  76.8     4.6 0.00012   19.9   4.3   30   32-67     66-95  (535)
 75 pfam00781 DAGK_cat Diacylglyce  76.3     5.7 0.00015   19.3   5.7   52  136-192    52-104 (127)
 76 cd06294 PBP1_ycjW_transcriptio  76.1     5.8 0.00015   19.2  13.2  129  125-285    47-182 (270)
 77 cd03133 GATase1_ES1 Type 1 glu  75.5     3.6 9.2E-05   20.5   3.5   63  131-193    75-155 (213)
 78 TIGR03405 Phn_Fe-ADH phosphona  75.2     6.1 0.00016   19.1   6.4   50  127-176    67-135 (355)
 79 PRK06179 short chain dehydroge  74.5     4.7 0.00012   19.8   3.8   30  270-299   152-181 (270)
 80 PRK00002 aroB 3-dehydroquinate  74.4     6.4 0.00016   18.9   4.6   69  122-196    74-145 (360)
 81 PRK00143 trmU tRNA (5-methylam  74.2     6.4 0.00016   18.9   4.6   72   26-145     1-72  (355)
 82 cd06274 PBP1_FruR Ligand bindi  74.1     6.5 0.00017   18.9   9.3  124  127-284    44-175 (264)
 83 TIGR01481 ccpA catabolite cont  72.5       7 0.00018   18.7   6.2   82  128-224   106-187 (332)
 84 cd07995 TPK Thiamine pyrophosp  72.3     7.1 0.00018   18.6   8.4   96   33-150     1-102 (208)
 85 KOG4180 consensus               72.0       3 7.6E-05   21.1   2.3   74   83-174    45-136 (395)
 86 PRK11780 isoprenoid biosynthes  71.1     4.3 0.00011   20.0   3.0  101   30-158     2-105 (217)
 87 cd06267 PBP1_LacI_sugar_bindin  71.0     7.6 0.00019   18.4  12.1  120   32-218     2-122 (264)
 88 pfam00532 Peripla_BP_1 family.  70.8     7.7  0.0002   18.4  13.5  174   30-286     2-182 (281)
 89 pfam07905 PucR Purine cataboli  69.4     8.2 0.00021   18.2   5.3   96   61-176    11-107 (122)
 90 cd02017 TPP_E1_EcPDC_like Thia  68.9     8.4 0.00022   18.2   4.4   14  141-154   149-162 (386)
 91 TIGR00519 asnASE_I L-asparagin  68.3     8.7 0.00022   18.1   6.1   79  124-204    65-147 (347)
 92 cd06281 PBP1_LacI_like_5 Ligan  68.3     8.7 0.00022   18.1   6.9   80  127-219    44-123 (269)
 93 PRK11814 cysteine desulfurase   67.1     4.9 0.00013   19.7   2.6  124  127-300   105-239 (484)
 94 PRK06203 aroB 3-dehydroquinate  66.9     9.2 0.00024   17.9   4.9   68  124-197    94-164 (390)
 95 TIGR01917 gly_red_sel_B glycin  66.1     1.7 4.3E-05   22.7   0.1   42   25-66    121-162 (431)
 96 cd06323 PBP1_ribose_binding Pe  66.0     9.6 0.00024   17.8  12.8   99   32-191     2-102 (268)
 97 cd06321 PBP1_ABC_sugar_binding  65.3     9.9 0.00025   17.7  12.4  128   31-219     1-128 (271)
 98 TIGR00250 TIGR00250 conserved   65.0       6 0.00015   19.1   2.7   81  137-234    24-105 (133)
 99 cd06290 PBP1_LacI_like_9 Ligan  63.7      11 0.00027   17.5   6.8   77  127-218    44-121 (265)
100 cd01575 PBP1_GntR Ligand-bindi  63.6      11 0.00027   17.5  14.1  130  125-286    42-177 (268)
101 KOG1342 consensus               63.2      11 0.00028   17.5   4.3   52  127-185   280-331 (425)
102 cd06297 PBP1_LacI_like_12 Liga  62.6      11 0.00028   17.4  12.7   66  128-205    45-110 (269)
103 TIGR00676 fadh2 5,10-methylene  61.0      12  0.0003   17.2   4.5  103   42-164    11-138 (302)
104 PRK10423 transcriptional repre  60.8      12  0.0003   17.2   6.7   44  126-174   100-143 (327)
105 TIGR03652 FeS_repair_RIC iron-  60.7     6.9 0.00018   18.7   2.4   27  127-155     8-34  (216)
106 cd01541 PBP1_AraR Ligand-bindi  60.4      12 0.00031   17.1  11.9   83  126-218    43-127 (273)
107 KOG0571 consensus               59.9      11 0.00029   17.3   3.4   23  141-163   229-251 (543)
108 PRK06186 hypothetical protein;  59.8      12 0.00032   17.1   5.6   70  137-222    52-127 (229)
109 pfam02401 LYTB LytB protein. T  59.7      12 0.00032   17.1   4.0   29   36-66      5-33  (280)
110 pfam02844 GARS_N Phosphoribosy  59.1      13 0.00033   17.0   5.4   93   31-175     1-93  (99)
111 cd00537 MTHFR Methylenetetrahy  59.0      13 0.00033   17.0   4.9   90   62-173    29-133 (274)
112 KOG1184 consensus               57.2      14 0.00035   16.8   7.2   92  135-228    63-174 (561)
113 COG3961 Pyruvate decarboxylase  56.9      14 0.00035   16.8   8.0   82  136-217    64-165 (557)
114 COG0052 RpsB Ribosomal protein  56.6      14 0.00036   16.7   4.9   58  139-203   157-215 (252)
115 cd06285 PBP1_LacI_like_7 Ligan  56.5      14 0.00036   16.7  11.4  127  124-285    41-174 (265)
116 COG0129 IlvD Dihydroxyacid deh  56.4      14 0.00036   16.7   8.9  128    8-175    24-153 (575)
117 cd06289 PBP1_MalI_like Ligand-  56.1      14 0.00037   16.7  13.3  139  124-291    41-183 (268)
118 KOG4435 consensus               56.0      14 0.00037   16.7   5.2   54  123-179   102-155 (535)
119 PRK12361 hypothetical protein;  55.9      14 0.00037   16.7   4.5   49  128-182   286-335 (546)
120 PRK00994 F420-dependent methyl  55.9      10 0.00026   17.6   2.6   49  123-173    44-92  (276)
121 PRK07092 benzoylformate decarb  55.7      12  0.0003   17.3   2.8   65  123-192   183-251 (521)
122 COG3395 Uncharacterized protei  55.2      14 0.00034   16.8   3.1   24  363-386   330-353 (413)
123 PRK01045 ispH 4-hydroxy-3-meth  55.1      15 0.00038   16.6   3.7   35   30-66      1-35  (304)
124 TIGR01980 sufB FeS assembly pr  53.8     5.3 0.00013   19.5   0.8  124  128-301   100-235 (469)
125 PRK10703 DNA-binding transcrip  53.0      16 0.00041   16.4  11.2  129  125-285   102-238 (335)
126 TIGR01162 purE phosphoribosyla  52.1      13 0.00033   17.0   2.6   74  123-222    38-112 (159)
127 pfam09001 DUF1890 Domain of un  52.1      17 0.00042   16.3   4.4   88  130-231    19-112 (138)
128 PRK12360 4-hydroxy-3-methylbut  52.0      17 0.00042   16.3   4.0   58   30-101     1-58  (281)
129 pfam00731 AIRC AIR carboxylase  51.8      17 0.00043   16.2   4.1   82  123-231    40-126 (150)
130 PRK08639 threonine dehydratase  51.4      17 0.00043   16.2   5.8   45  129-176   166-213 (418)
131 COG0458 CarB Carbamoylphosphat  51.4      17 0.00043   16.2   4.1   50  127-176    59-109 (400)
132 cd01746 GATase1_CTP_Synthase T  51.1      17 0.00044   16.2   3.7   58  137-210    54-113 (235)
133 cd05015 SIS_PGI_1 Phosphogluco  50.9      17 0.00044   16.2   6.1   40  125-164     5-45  (158)
134 PRK13371 4-hydroxy-3-methylbut  49.8      18 0.00046   16.0   7.3   81    6-103    24-104 (392)
135 KOG3125 consensus               49.6      18 0.00046   16.0   5.3   93  197-291    41-137 (234)
136 cd01714 ETF_beta The electron   49.1      18 0.00047   16.0   7.0   24  219-242    58-81  (202)
137 COG0763 LpxB Lipid A disacchar  49.1      18 0.00047   16.0   6.6  115   30-173     2-117 (381)
138 cd06291 PBP1_Qymf_like Ligand   48.4      19 0.00048   15.9   6.5   75  128-219    45-119 (265)
139 COG0504 PyrG CTP synthase (UTP  48.3      19 0.00048   15.9   5.5   29   11-46    121-149 (533)
140 PRK00087 4-hydroxy-3-methylbut  48.3      19 0.00048   15.9   4.1   43  127-173   196-238 (670)
141 cd06533 Glyco_transf_WecG_TagA  48.0      19 0.00049   15.9   6.5   48  123-173    31-78  (171)
142 PRK05784 phosphoribosylamine--  48.0      19 0.00049   15.9   8.1   41   30-77      1-45  (485)
143 cd06275 PBP1_PurR Ligand-bindi  47.3      20  0.0005   15.8  12.0   51  125-180    42-92  (269)
144 PRK13477 bifunctional pantoate  47.3      20  0.0005   15.8   4.4  159    2-180     1-181 (512)
145 PHA00447 lysozyme               47.2      20  0.0005   15.8   4.7   36  151-192    99-134 (142)
146 cd06286 PBP1_CcpB_like Ligand-  47.1      20  0.0005   15.8  10.3   78  127-219    44-121 (260)
147 cd06272 PBP1_hexuronate_repres  46.6      20 0.00051   15.7   6.2  117   32-219     2-118 (261)
148 cd06298 PBP1_CcpA_like Ligand-  46.5      20 0.00051   15.7  12.1   80  125-218    42-122 (268)
149 TIGR01975 isoAsp_dipep beta-as  46.3      20 0.00052   15.7   3.0   46  129-192   112-157 (391)
150 COG1819 Glycosyl transferases,  45.3      21 0.00054   15.6   3.3   46   29-78      1-47  (406)
151 TIGR01459 HAD-SF-IIA-hyp4 HAD-  45.2      21 0.00054   15.6   3.5   60  329-414   179-240 (243)
152 cd06271 PBP1_AglR_RafR_like Li  44.9      21 0.00054   15.6  12.1  127  125-285    46-180 (268)
153 cd01743 GATase1_Anthranilate_S  43.9      22 0.00056   15.5   3.7   21  133-153    37-57  (184)
154 PRK13951 bifunctional shikimat  43.6      22 0.00057   15.4   4.4   69  122-196   218-289 (488)
155 COG1979 Uncharacterized oxidor  43.0      23 0.00058   15.4   3.2   41  125-165    72-112 (384)
156 cd01536 PBP1_ABC_sugar_binding  42.7      23 0.00059   15.3  20.3  126   31-219     1-128 (267)
157 KOG3857 consensus               42.6      23 0.00059   15.3   5.6   53  124-176   113-184 (465)
158 PRK10992 cell morphogenesis/ce  42.4      17 0.00044   16.1   2.0   27  127-155    15-41  (220)
159 cd01537 PBP1_Repressors_Sugar_  42.1      24  0.0006   15.3  11.2  124   31-218     1-124 (264)
160 cd06283 PBP1_RegR_EndR_KdgR_li  42.1      24  0.0006   15.3  10.9   47  126-178    43-89  (267)
161 TIGR01133 murG undecaprenyldip  42.1      24  0.0006   15.3   7.4  128   27-183     1-134 (368)
162 cd06270 PBP1_GalS_like Ligand   41.7      24 0.00061   15.2  11.7  126  127-285    44-176 (268)
163 COG1609 PurR Transcriptional r  41.6      24 0.00061   15.2   6.8  128  124-285   100-235 (333)
164 cd06310 PBP1_ABC_sugar_binding  41.4      24 0.00061   15.2  17.5  128   31-219     1-130 (273)
165 TIGR00216 ispH_lytB 4-hydroxy-  41.3      24 0.00062   15.2   4.1   56  327-387   215-270 (354)
166 pfam11931 DUF3449 Domain of un  41.2      24 0.00061   15.2   2.6   74  126-208    78-153 (187)
167 COG1029 FwdB Formylmethanofura  41.0      24 0.00062   15.2   3.9   47  124-180    66-112 (429)
168 PRK13030 2-oxoacid ferredoxin   41.0      25 0.00063   15.2   6.5   30  214-243   496-529 (1168)
169 TIGR01663 PNK-3'Pase polynucle  40.6      25 0.00063   15.1   4.9   44  242-285   198-247 (526)
170 KOG1436 consensus               40.4      25 0.00064   15.1   7.2   26  351-376   335-360 (398)
171 TIGR02638 lactal_redase lactal  39.9      25 0.00065   15.1   3.2  107  124-234    72-193 (380)
172 pfam04405 ScdA_N Domain of Unk  39.9      25 0.00064   15.1   2.5   28  126-155    11-38  (56)
173 TIGR01283 nifE nitrogenase MoF  39.8      18 0.00047   16.0   1.8   56  129-190   225-290 (470)
174 COG3155 ElbB Uncharacterized p  39.6      26 0.00066   15.0   8.0  101   30-158     2-105 (217)
175 cd06322 PBP1_ABC_sugar_binding  38.8      26 0.00068   15.0  11.7  127   32-221     2-130 (267)
176 PRK12483 threonine dehydratase  38.5      27 0.00068   14.9   5.5  139  129-280   175-369 (521)
177 TIGR00419 tim triosephosphate   38.5      27 0.00068   14.9   2.8   25  219-243    67-91  (244)
178 cd06295 PBP1_CelR Ligand bindi  37.2      28 0.00072   14.8  10.6  123  129-285    55-185 (275)
179 cd06296 PBP1_CatR_like Ligand-  37.1      28 0.00072   14.8  12.5  136  126-292    43-186 (270)
180 COG0816 Predicted endonuclease  37.0      28 0.00072   14.8   3.2   29  152-180    40-68  (141)
181 pfam03808 Glyco_tran_WecB Glyc  36.4      29 0.00074   14.7   6.2   46  124-173    34-80  (172)
182 PRK13805 bifunctional acetalde  36.3      29 0.00074   14.7   6.2  170   30-236   106-322 (862)
183 PRK13029 2-oxoacid ferredoxin   36.3      29 0.00074   14.7   6.5   31  214-244   513-547 (1186)
184 cd02158 PanC_ATPS PanC_ATPS     35.8      29 0.00075   14.7   4.9   31  211-241    13-44  (183)
185 pfam01993 MTD methylene-5,6,7,  35.6      30 0.00076   14.6   2.6   49  123-173    43-92  (276)
186 CHL00101 trpG anthranilate syn  35.2      30 0.00077   14.6   3.4   23  132-154    37-59  (190)
187 cd02001 TPP_ComE_PpyrDC Thiami  35.1      30 0.00077   14.6   3.0   39  140-182    60-99  (157)
188 cd06308 PBP1_sensor_kinase_lik  34.5      31 0.00079   14.5  10.8  132  127-291    45-187 (270)
189 TIGR03282 methan_mark_13 putat  34.0      31  0.0008   14.5   4.8   30  261-290   165-194 (352)
190 cd06282 PBP1_GntR_like_2 Ligan  34.0      31  0.0008   14.5   7.0   79  127-218    44-122 (266)
191 PRK06895 para-aminobenzoate sy  33.9      32 0.00081   14.5   2.6   15  139-153    45-59  (191)
192 PRK13276 cell wall biosynthesi  33.8      25 0.00065   15.1   1.7   27  127-155    15-41  (224)
193 cd06325 PBP1_ABC_uncharacteriz  33.2      32 0.00083   14.4   7.3   90   31-176     1-90  (281)
194 cd06279 PBP1_LacI_like_3 Ligan  32.3      34 0.00086   14.3   6.7   73  132-218    50-122 (283)
195 pfam05833 FbpA Fibronectin-bin  32.1      28 0.00072   14.8   1.7   13  214-226   111-123 (447)
196 TIGR01508 rib_reduct_arch diam  31.9      34 0.00087   14.3   3.0   83   90-178    93-184 (224)
197 PRK02399 hypothetical protein;  31.9      34 0.00087   14.3   3.9   98   60-177    28-125 (407)
198 cd01744 GATase1_CPSase Small c  31.5      34 0.00088   14.2   4.1   49  132-193    33-82  (178)
199 PRK09472 ftsA cell division pr  30.9      35  0.0009   14.2   4.5   41  330-373   344-385 (420)
200 cd06319 PBP1_ABC_sugar_binding  30.5      36 0.00092   14.1  15.3   86   31-173     1-86  (277)
201 cd06305 PBP1_methylthioribose_  30.4      36 0.00092   14.1  15.3  129   31-222     1-130 (273)
202 PRK08722 3-oxoacyl-(acyl carri  30.3      36 0.00092   14.1   7.2  152   27-209     1-179 (414)
203 COG1013 PorB Pyruvate:ferredox  30.1      37 0.00093   14.1   3.5   39  141-183    90-129 (294)
204 COG3222 Uncharacterized protei  29.8      37 0.00094   14.0   5.3   12  346-357   195-206 (211)
205 PRK12342 putative electron tra  29.6      37 0.00095   14.0   6.8   53  129-182    68-125 (254)
206 PRK09193 indolepyruvate ferred  29.4      38 0.00096   14.0   6.5   31  214-244   497-531 (1155)
207 KOG2178 consensus               29.3      13 0.00032   17.0  -0.4   56  137-207   167-224 (409)
208 TIGR00674 dapA dihydrodipicoli  29.2      38 0.00096   14.0   3.4   24  124-147    18-41  (288)
209 COG2846 Regulator of cell morp  29.1      38 0.00096   14.0   2.7   28  126-155    14-41  (221)
210 pfam02548 Pantoate_transf Keto  29.1      38 0.00097   14.0   5.2   44  124-173    94-137 (261)
211 cd05007 SIS_Etherase N-acetylm  28.3      39   0.001   13.9   9.8  117   40-176    31-154 (257)
212 pfam06414 Zeta_toxin Zeta toxi  28.0      40   0.001   13.8   8.8   27  200-227    78-104 (191)
213 PRK12726 flagellar biosynthesi  27.9      40   0.001   13.8   3.4   38  134-171   203-240 (407)
214 TIGR03336 IOR_alpha indolepyru  27.9      40   0.001   13.8   6.5   44  215-258   422-470 (595)
215 KOG1357 consensus               27.9      40   0.001   13.8   4.2   31  128-158   158-191 (519)
216 COG1844 Uncharacterized protei  27.8      40   0.001   13.8   7.7   40  141-182     2-41  (125)
217 cd06349 PBP1_ABC_ligand_bindin  27.4      40   0.001   13.8   6.4   24   36-59      8-31  (340)
218 PRK04183 glutamyl-tRNA(Gln) am  27.0      41   0.001   13.7   7.2   70  124-202   134-207 (421)
219 COG0685 MetF 5,10-methylenetet  27.0      41  0.0011   13.7   5.4   81   47-150    32-117 (291)
220 cd02064 Flavokinase_C Riboflav  27.0      41  0.0011   13.7   5.9   58  127-194    57-116 (179)
221 PRK11041 DNA-binding transcrip  26.4      42  0.0011   13.6  10.4  124  127-284   112-243 (341)
222 PRK05380 pyrG CTP synthetase;   26.3      42  0.0011   13.6   4.9   68  194-266   272-352 (534)
223 PRK08857 para-aminobenzoate sy  26.0      43  0.0011   13.6   3.5   50  132-194    37-86  (192)
224 PRK01966 ddl D-alanyl-alanine   26.0      43  0.0011   13.6   5.4   40   27-67      1-41  (344)
225 PRK07649 para-aminobenzoate/an  25.7      44  0.0011   13.6   3.3   51  132-195    37-87  (195)
226 COG4069 Uncharacterized protei  25.6      44  0.0011   13.6   4.4   40  127-174   257-296 (367)
227 PRK12815 carB carbamoyl phosph  25.2      44  0.0011   13.5  10.4   12   27-38      5-16  (1068)
228 pfam07859 Abhydrolase_3 alpha/  25.0      45  0.0011   13.5   4.5   44  189-235    44-91  (209)
229 TIGR03573 WbuX N-acetyl sugar   24.9      45  0.0011   13.5   6.4   74  120-207    38-115 (343)
230 KOG0343 consensus               24.8      45  0.0012   13.5   4.6  128   70-205    80-247 (758)
231 pfam05893 LuxC Acyl-CoA reduct  24.7      45  0.0012   13.4   5.6   74  137-224   168-246 (400)
232 PRK05294 carB carbamoyl phosph  24.4      46  0.0012   13.4  10.4   14   26-39      4-17  (1063)
233 pfam00117 GATase Glutamine ami  24.3      46  0.0012   13.4   4.8   47  134-195    37-86  (187)
234 PRK09405 aceE pyruvate dehydro  24.1      47  0.0012   13.4   3.8  120   38-180   265-394 (886)
235 TIGR00108 eRF peptide chain re  23.9      22 0.00055   15.5  -0.1  174   64-266   148-325 (425)
236 COG0046 PurL Phosphoribosylfor  23.9      42  0.0011   13.7   1.4   18  190-207   481-498 (743)
237 PRK00025 lpxB lipid-A-disaccha  23.6      48  0.0012   13.3   9.1  137   31-205     3-141 (382)
238 pfam01328 Peroxidase_2 Peroxid  23.5      33 0.00085   14.3   0.9   11   37-47     25-35  (298)
239 pfam08459 UvrC_HhH_N UvrC Heli  23.4      48  0.0012   13.3   6.7   51  125-178    55-115 (154)
240 PRK11199 tyrA bifunctional cho  23.2      48  0.0012   13.3   3.4   34  137-172    96-129 (374)
241 PRK13129 consensus              23.2      48  0.0012   13.3   5.9  149  126-297     5-161 (267)
242 COG0041 PurE Phosphoribosylcar  23.2      48  0.0012   13.3   3.6   83  123-231    42-128 (162)
243 TIGR02546 III_secr_ATP type II  22.9      49  0.0013   13.2   4.5  127  176-341   119-245 (430)
244 COG2326 Uncharacterized conser  22.8      39   0.001   13.8   1.1   73  134-223    68-153 (270)
245 KOG2770 consensus               22.8      41   0.001   13.8   1.2   11  327-337   301-311 (401)
246 KOG1169 consensus               22.8      49  0.0013   13.2   6.8   93  130-222   315-410 (634)
247 pfam02457 DisA_N DisA bacteria  22.7      50  0.0013   13.2   2.3   64  128-223     2-65  (122)
248 cd01976 Nitrogenase_MoFe_alpha  22.7      50  0.0013   13.2   5.0   21  326-346   230-250 (421)
249 COG1570 XseA Exonuclease VII,   22.7      50  0.0013   13.2   8.5  100   30-181   136-240 (440)
250 PRK05670 anthranilate synthase  22.6      50  0.0013   13.2   4.0   23  132-154    37-59  (192)
251 TIGR01369 CPSaseII_lrg carbamo  22.5      50  0.0013   13.2   3.9   47  127-179   637-686 (1089)
252 COG5561 Predicted metal-bindin  22.3      50  0.0013   13.2   4.7   29   14-43     13-41  (101)
253 PTZ00063 histone deacetylase;   22.2      51  0.0013   13.1   4.9   21  132-152   245-265 (439)
254 pfam10479 FSA_C Fragile site-a  22.2      51  0.0013   13.1   2.6   42  326-368   568-609 (615)
255 pfam06792 UPF0261 Uncharacteri  21.7      52  0.0013   13.1   4.3   97   60-177    27-124 (403)
256 pfam00289 CPSase_L_chain Carba  21.6      52  0.0013   13.1   8.1  106   29-175     1-106 (109)
257 TIGR01811 sdhA_Bsu succinate d  21.6      52  0.0013   13.1   3.9   70  138-207   393-470 (620)
258 cd02005 TPP_PDC_IPDC Thiamine   21.5      52  0.0013   13.1   4.8   37  140-181    69-106 (183)
259 PRK06395 phosphoribosylamine--  21.2      53  0.0014   13.0   4.7   22   29-53      2-23  (435)
260 pfam03159 XRN_N XRN 5'-3' exon  21.1      53  0.0014   13.0   3.1   18  138-155    74-91  (236)
261 KOG2636 consensus               21.1      53  0.0014   13.0   1.5   29  344-374   403-432 (497)
262 CHL00085 ycf24 putative ABC tr  21.1      36 0.00092   14.1   0.6  124  127-300   106-240 (485)
263 PRK09224 threonine dehydratase  21.0      54  0.0014   13.0   5.6  139  129-280   158-352 (504)
264 PRK00074 guaA GMP synthase; Re  20.9      21 0.00054   15.6  -0.6   43   32-76     49-91  (513)
265 TIGR03385 CoA_CoA_reduc CoA-di  20.9      54  0.0014   13.0   6.5   55  117-174   115-169 (427)
266 COG0482 TrmU Predicted tRNA(5-  20.9      54  0.0014   13.0   4.5  113   27-199     1-114 (356)
267 pfam07287 DUF1446 Protein of u  20.8      54  0.0014   13.0   6.2   50  125-174    58-107 (362)
268 PRK12311 rpsB 30S ribosomal pr  20.8      54  0.0014   12.9   6.5   77  126-211   145-229 (332)
269 PRK06180 short chain dehydroge  20.7      54  0.0014   12.9   5.2   89   27-151     1-91  (277)
270 cd01171 YXKO-related B.subtili  20.6      55  0.0014   12.9   2.8   30  310-339   184-213 (254)
271 PRK09201 amidase; Provisional   20.5      55  0.0014   12.9   6.1   12  415-426   406-417 (465)
272 cd06342 PBP1_ABC_LIVBP_like Ty  20.5      55  0.0014   12.9   6.8   29   31-59      1-31  (334)
273 PRK10401 DNA-binding transcrip  20.2      56  0.0014   12.9  11.7   90  127-231   104-202 (346)
274 PRK13121 consensus              20.2      56  0.0014   12.9   4.2  149  127-297     4-160 (265)
275 PRK13112 consensus              20.2      56  0.0014   12.9   5.7  149  127-297     5-161 (279)

No 1  
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00  E-value=0  Score=778.10  Aligned_cols=400  Identities=58%  Similarity=0.984  Sum_probs=380.1

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r   27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV  106 (426)
Q Consensus        27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~  106 (426)
                      ||+||||||||||||||||++||++++++..++++++||||++||+||++++.++++++.++.+..++++|||+|||||+
T Consensus         1 ms~kriaIlTsGGd~PGlNavIr~vV~~~~~~~~~~eV~G~~~Gy~GLl~~~~~~l~~~~~~~~~~l~~~GGTiLGSsR~   80 (403)
T PRK06555          1 MAKKKVAMLTAGGLAPCLSSAVGGLIERYTDVAPEIEIIAYKSGYQGLLLGDSIEITPAMREKAHLLHRHGGSPIGNSRV   80 (403)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCEECCHHHHHHHHHHHCCCCCEECCCCC
T ss_conf             99888999898776288999999999999861798499998721487569995507866777775662289776717988


Q ss_pred             CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             88653011101234567456999999998639988999488257899999999998518996288522223477222114
Q gi|254780227|r  107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ  186 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~  186 (426)
                      +++...+..+|....++++.++.++++|++++||+|++||||||+++|++|++++++++++|+||||||||||||++||+
T Consensus        81 kl~~~~d~~kr~~~~eg~d~~~~~~e~L~~~gId~L~~IGGDgS~~~A~~La~~~~~~~~~i~VVGIPKTIDNDl~~tD~  160 (403)
T PRK06555         81 KLTNAADCVKRGLVKEGEDPLRVAAERLASDGVDILHTIGGDDTNTTAADLAAYLAANGYDLTVVGLPKTIDNDVVPIRQ  160 (403)
T ss_pred             CCCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC
T ss_conf             87775320011443135359999999999829999999888059999999999999739995289614552178877688


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             63356599999999999998775166616999976987428999987401433231011111110001457652328786
Q gi|254780227|r  187 SLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEM  266 (426)
Q Consensus       187 tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~  266 (426)
                      ||||+||+++++++|++++.||.||+|.+++||||||||||||+++|+|.++.+..-.+.++.......+++|.|||||.
T Consensus       161 TfGF~TAv~~a~~aid~l~~tA~S~~r~~~vvEvMGR~aGwIA~~aa~A~~~~~~~~~~~~~~~~~~~~~~v~~iliPE~  240 (403)
T PRK06555        161 SLGAWTAAEQGARFFDNVVNEQSAAPRMLVIHEVMGRNCGWLTAATARAYRQRLSRNEYVPGLMMDAELKDIDAVYLPEM  240 (403)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf             86858899999999999998875167769999951778558999999875533012001310001100378888980078


Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             55989999999998502895389950421111110123201122222344454435566489999999987187431884
Q gi|254780227|r  267 SFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQ  346 (426)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~~  346 (426)
                      ||+++.+.++++++++++++++||||||+.++....+.+..++...+|++||+++..++++++|++++.++++.++..++
T Consensus       241 ~f~l~~~~~~l~~~~~~~~~~vIvvaEGAg~~~~~~~~~~~g~~~~~Da~G~~~l~~i~~g~~~~~~~~~~~~~~~~~v~  320 (403)
T PRK06555        241 AFDLEAEAARLKAVMDRTGCVTIFVSEGAGLDAIVAEREAAGETVKRDAFGHVKIDTINVGAWFGKQFADLLGAEKSLVQ  320 (403)
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             53605479999999974798589983366730445556634885566875677214467779999999987187707976


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             18861235589867999999999999999977998669999859869964308985268820777589999998448898
Q gi|254780227|r  347 KSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILRHTGQKS  426 (426)
Q Consensus       347 ~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k~vd~~~~~~~~~l~~~gq~~  426 (426)
                      +|||++||++|+++|+.||++||+.||+++|+|+||+|...++.++.+.+||+++++++|++||++.||+++|+.||||-
T Consensus       321 ~~~Y~~Rs~~an~~D~~~c~~l~~~AVh~amaG~tg~vg~~~~~~~~~~~i~~~~i~~~k~~d~~~~~~~~~l~~tgQp~  400 (403)
T PRK06555        321 KSGYFARSAAANGDDLRLIQSMVDLAVESALNKVSGVTGHDEDQNGKLRTIEFPRIKGGKAFDTSTPWFGEVLDNIGQPY  400 (403)
T ss_pred             CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             88835668999878999999999999999968988868887077876967407986479972887179999999739969


No 2  
>TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829    Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=100.00  E-value=0  Score=752.53  Aligned_cols=330  Identities=26%  Similarity=0.357  Sum_probs=296.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCC-CCCEECCC-CCHHHHHHHHHCCCCCCCCC-CCC
Q ss_conf             7999836877514899999999999985699789998383660107-99130462-69888874640787400336-788
Q gi|254780227|r   31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLL-DDKITITE-DMRQNAEQLLSYGGSPIGNS-RVK  107 (426)
Q Consensus        31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~-~~~~~l~~-l~~~~v~~~~~~GGt~Lgts-R~~  107 (426)
                      |||||||||||||||+|||++|+++..- .+|||+||++||+||++ ++   ..+ |+.+++++|+..|||+|||| |.+
T Consensus         1 kIGvLTGGGDCPGLNAVIR~vV~~a~~~-~G~EV~G~~~Gw~GLL~n~~---~~~lL~~~~v~gIL~~GGTILGsSNr~N   76 (339)
T TIGR02483         1 KIGVLTGGGDCPGLNAVIRGVVRRAIAE-YGWEVIGIRDGWRGLLENGD---IVPLLDLEDVRGILPRGGTILGSSNRTN   76 (339)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHHEE-CCCEEEEEECCCHHHHCCCC---CCCCCCHHHHHHHHHCCCEEECCCCCCC
T ss_conf             9377348777411238987875533101-28668887000000111666---0354781016879851990872577778


Q ss_pred             CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             86530111012345674569999999986399889994882578999999999985189962885222234772221146
Q gi|254780227|r  108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS  187 (426)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t  187 (426)
                      ||..++....+.+. ..+-.+++.+|+++++||+||.||||||++.|.+|++.     .+||||||||||||||..||+|
T Consensus        77 PF~~~~~~~~G~~v-~~DvSd~~~~n~~~~GlDAlIaIGGdGTL~~A~~l~~~-----GGl~vVGVPKTIDNDl~~TD~T  150 (339)
T TIGR02483        77 PFKYEEDGEDGKTV-VRDVSDKIVANLKELGLDALIAIGGDGTLGIARRLADK-----GGLPVVGVPKTIDNDLEATDYT  150 (339)
T ss_pred             CCCCCCCCCCCCEE-EEECCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHC-----CCCCEEEECCCCCCCCCCCCCE
T ss_conf             74200105798279-97320899998996498189986687268999999965-----8985474157754675324402


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             33565999999999999987751666169999769874289999874014332310111111100014576523287865
Q gi|254780227|r  188 LGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMS  267 (426)
Q Consensus       188 iGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~  267 (426)
                      ||||||++.++||+|+|++||.|| .|++||||||||||||||+|+||+||                    |+|||||.|
T Consensus       151 FGFDTAv~iATEAlDRLhtTAeSH-~RVmVvEVMGRhAGWIAL~sG~aGGA--------------------d~ILIPE~P  209 (339)
T TIGR02483       151 FGFDTAVEIATEALDRLHTTAESH-HRVMVVEVMGRHAGWIALHSGIAGGA--------------------DVILIPEIP  209 (339)
T ss_pred             ECCCCHHHHHHHHHHHHHHHHHHH-CCEEEEEECCCCHHHHHHHHHHHCCC--------------------CEEEECCCC
T ss_conf             221007899999875240058731-94899998485457999884352087--------------------678978604


Q ss_pred             CCHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf             5989999999998502-8953899504211111101232011222223444--544355664899999999871874318
Q gi|254780227|r  268 FNLEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFG--HILLDKMNVGSWFADKFANMIKAERSI  344 (426)
Q Consensus       268 ~~~~~~~~~i~~~~~~-~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g--~~~l~~~~i~~~La~~i~~~~~~~~~~  344 (426)
                      |++++++++++++.++ ++|++||||||+..+..    +..-+....|.++  |.+|++  ++++||++|+++++.+ +|
T Consensus       210 ~d~~~v~~~v~~r~~~G~~f~ivVVAEGa~p~~G----~~~~~~~~~d~~g~G~~RLGG--iG~~lA~~i~~rtg~E-~R  282 (339)
T TIGR02483       210 FDIDSVCEKVRERFARGKRFAIVVVAEGAKPKGG----EMVVQEGVKDAFGFGHVRLGG--IGNWLAEEIERRTGIE-TR  282 (339)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CEEECCCCCCCCCCCCEECCC--HHHHHHHHHHHHCCCC-EE
T ss_conf             8889999999999872667525899726326787----141005642346766500132--1889999999871982-20


Q ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEE
Q ss_conf             841886123558986799999999999999997799866999985986996430
Q gi|254780227|r  345 VQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIK  398 (426)
Q Consensus       345 ~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~  398 (426)
                      +++|||+||||+||+|||+||++||.+||+++.+|++|.||+++++..+++||.
T Consensus       283 ~~VLGH~QRGG~PsafDR~LAtRfG~~Avdlv~~G~fg~MVALrg~~i~~V~i~  336 (339)
T TIGR02483       283 ATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGHMVALRGTDIVSVPIA  336 (339)
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECHH
T ss_conf             355003525979777688899999999999986199770799857756650320


No 3  
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00  E-value=0  Score=727.65  Aligned_cols=368  Identities=25%  Similarity=0.374  Sum_probs=342.0

Q ss_pred             HHHHHCCHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHH
Q ss_conf             99873321210348763379998368775148999999999999856997899983836601079913046269888874
Q gi|254780227|r   13 MWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQ   92 (426)
Q Consensus        13 ~~~~~g~~~~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~   92 (426)
                      -+-++|||++++|||++.|+|||||||+|||+|+|||++|..+...|+.++||||++||+||+++...++.+|+++.+++
T Consensus        63 ~~e~AGPR~~i~FdP~~~k~gIvTcGGlCPGLN~VIR~iv~~l~~~Ygv~~V~Gi~~G~~Gli~~~~~~~i~Lt~~~V~~  142 (442)
T PRK06830         63 FFEKAGPREKIYFDPSKVKAGIVTCGGLCPGINDVIRAIVLELYHRYGVRRIYGFRYGYEGLIPRYGHDPVELTPEVVAD  142 (442)
T ss_pred             CEEECCCCCEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEECCHHHHCC
T ss_conf             30335885100127766079998567677648699999999988871997899967645453556688816599889646


Q ss_pred             HHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             64078740033678886530111012345674569999999986399889994882578999999999985189962885
Q gi|254780227|r   93 LLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG  172 (426)
Q Consensus        93 ~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vig  172 (426)
                      |++.|||+|||||...                 +.+.++++|++++||.|++|||||||++|..|++++.+++.+|+|||
T Consensus       143 I~~~GGTILGsSRg~~-----------------d~~~ivd~l~~~gid~L~~IGGDGTl~gA~~i~~e~~~rgl~I~VvG  205 (442)
T PRK06830        143 IHQFGGTILGSSRGPQ-----------------DPVEIVDTLERMNINILFVIGGDGTLKGALKIAEEIARRNLKISVVG  205 (442)
T ss_pred             HHHCCCCEEEECCCCC-----------------CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             5537982896089998-----------------98999999998399989994880278999999999996389940774


Q ss_pred             ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             22223477222114633565999999999999987751666169999769874289999874014332310111111100
Q gi|254780227|r  173 LPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFS  252 (426)
Q Consensus       173 iPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~  252 (426)
                      ||||||||+++||+||||+||++.++++|++++.||.|+++++++||+|||++||||++++||++               
T Consensus       206 IPKTIDNDi~~~d~sfGF~TAv~~a~~ai~~~~~eA~s~~~gvg~v~lMGR~sG~IA~~a~lA~~---------------  270 (442)
T PRK06830        206 IPKTIDNDINFIQKSFGFETAVEKATEAIACAHVEAKGAPNGIGLVKLMGRHSGFIAAYAALASK---------------  270 (442)
T ss_pred             CCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCC---------------
T ss_conf             56433477543031312461999999999999877651578559999836643089998775137---------------


Q ss_pred             CCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             0145765232878655989---9999999985028953899504211111101232011222223444544355664899
Q gi|254780227|r  253 PDFKGIDGVYLPEMSFNLE---VEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW  329 (426)
Q Consensus       253 ~~~~~~d~iliPE~~~~~~---~~~~~i~~~~~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~  329 (426)
                          ..|+|||||.||+++   .+++.++++++.++|++||||||+.++...       ....+|+.||..+.  +++.+
T Consensus       271 ----~ad~~LIPE~pf~l~g~~~~l~~l~~R~~~k~~avIvVAEGAGq~l~~-------~~~~~DaSGN~kl~--dIG~~  337 (442)
T PRK06830        271 ----DVNFVLIPEVPFDLEGENGLLAHLERRLLERGHAVIVVAEGAGQKLFD-------GTPETDASGNLKLG--DIGLF  337 (442)
T ss_pred             ----CCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-------CCCCCCCCCCCCCC--CHHHH
T ss_conf             ----787899128864555612299999999855995699995576643233-------44554877885032--78999


Q ss_pred             HHHHHHHHHCCCCE----EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCC
Q ss_conf             99999987187431----88418861235589867999999999999999977998669999859869964308985268
Q gi|254780227|r  330 FADKFANMIKAERS----IVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGG  405 (426)
Q Consensus       330 La~~i~~~~~~~~~----~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~  405 (426)
                      |+++++++++....    ++++|+|++|+++|+++|+.||++||++||+++|+|+||+||++++++++++||+ .++..+
T Consensus       338 L~~~I~~~f~~~~~~~~lkyIDPsY~IRs~pana~D~v~c~~Lg~~AVhaaMAG~Tg~~Vg~~~~~~v~VPI~-~a~~~~  416 (442)
T PRK06830        338 LKDKITEYFKKKGIEINLKYIDPSYIIRSVPANASDSVYCGRLGQNAVHAAMAGKTGMVVGLWNNRFVHLPID-LAVSQR  416 (442)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECHH-HHHCCC
T ss_conf             9999999986458078898706885011789980789999999999999996787784999988969997499-984538


Q ss_pred             CCCCCCHHHHHHHHHHCCCCC
Q ss_conf             820777589999998448898
Q gi|254780227|r  406 RVFDTNTPWFSDILRHTGQKS  426 (426)
Q Consensus       406 k~vd~~~~~~~~~l~~~gq~~  426 (426)
                      |.|||++.+|+++|+.||||+
T Consensus       417 k~Vdp~g~lW~~vl~~TgQP~  437 (442)
T PRK06830        417 KKVNPNGDLWRSVLESTGQPR  437 (442)
T ss_pred             CEECCCCHHHHHHHHHCCCCH
T ss_conf             641889379999998539970


No 4  
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00  E-value=0  Score=686.75  Aligned_cols=364  Identities=24%  Similarity=0.329  Sum_probs=337.4

Q ss_pred             HHHHCCHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHH
Q ss_conf             98733212103487633799983687751489999999999998569978999838366010799130462698888746
Q gi|254780227|r   14 WILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQL   93 (426)
Q Consensus        14 ~~~~g~~~~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~   93 (426)
                      +-++|||++++|+|++.|+|||||||+|||+|+|||++|..+...|+..+||||++||+||+.+...+..+|++..+++|
T Consensus        80 fE~AGPR~~iyFdP~~v~agIvTcGGlCPGLNaVIRavV~~l~~~YGv~~V~Gir~Gy~Gl~~~~~~~~i~Lt~~~V~~I  159 (486)
T PTZ00286         80 CELAAARKHLHFNPSETSIGIVTCGGICPGLNDVIRSITLTGIIAYRVKRVVGFRYGYWGLSKEGSKTAIELSRTDVRQI  159 (486)
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCHHHHHHH
T ss_conf             44568853356796451899991677886386999999999998659808999777665567667786065898997028


Q ss_pred             HHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             40787400336788865301110123456745699999999863998899948825789999999999851899628852
Q gi|254780227|r   94 LSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL  173 (426)
Q Consensus        94 ~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi  173 (426)
                      +..|||+|||||..                 .+.+.++++|++++||.|++||||||+++|..|++++++++.+|+||||
T Consensus       160 h~~GGTILGTSRG~-----------------~d~~~iVd~L~~~gId~LfvIGGDGTlrgA~~I~~e~~~Rgl~I~VVGI  222 (486)
T PTZ00286        160 HRFGGTILGSSRGP-----------------QDPKEMVDTLVRMKINILFTVGGDGTQRGALKIYEEAKRRGENIAVFGV  222 (486)
T ss_pred             HHCCCEEEECCCCC-----------------CCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             76798398548999-----------------8989999999985999899978846688999999999971788506646


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf             22234772221146335659999999999999877516661699997698742899998740143323101111111000
Q gi|254780227|r  174 PKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSP  253 (426)
Q Consensus       174 PKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~  253 (426)
                      ||||||||+.||+|||||||++.++++|+.++.||.|+++++.+||+|||++||||++++||++                
T Consensus       223 PKTIDNDI~~~D~TFGFdTAVe~AteAI~~ah~EA~sa~nGIGlVkLMGR~SGfIA~~A~LAs~----------------  286 (486)
T PTZ00286        223 PKTIDNDLAFSHRTFGFQTAVEQAVNAVRAAYAEAVSLNYGVGIVKLMGRESGFIAAQTAVASA----------------  286 (486)
T ss_pred             CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCC----------------
T ss_conf             8543576410010024023999999999999887523568518999725551289988775138----------------


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             14576523287865598999999999850289538995042111111012320112222234445443556648999999
Q gi|254780227|r  254 DFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADK  333 (426)
Q Consensus       254 ~~~~~d~iliPE~~~~~~~~~~~i~~~~~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~  333 (426)
                         .+|+|||||.||.++.+++.+++++++++++|||||||+.++.       ......+|+.||..+.  ++|.+|.++
T Consensus       287 ---~vd~cLIPE~pf~~~Gll~~le~Rl~~~ghaVIVVAEGAGQd~-------~~~~~~~DaSGN~~l~--DIG~~Lk~~  354 (486)
T PTZ00286        287 ---QANICLIPENPLPKETVMRLIERRFQQSRNCVIIVAEGFGQDW-------ETGTGGHDASGNKKLI--DIGFILKKE  354 (486)
T ss_pred             ---CCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-------CCCCCCCCCCCCEECH--HHHHHHHHH
T ss_conf             ---7778992487778005999999999847987999934677433-------3556885898898515--589999999


Q ss_pred             HHHHHCC---C----CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCC
Q ss_conf             9987187---4----31884188612355898679999999999999999779986699998598699643089852688
Q gi|254780227|r  334 FANMIKA---E----RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGR  406 (426)
Q Consensus       334 i~~~~~~---~----~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k  406 (426)
                      +++++..   +    ..++++|.|+.|++++++.|+.||++||+.||+++|+|+||++|+.++++++++||+ .++..+|
T Consensus       355 I~~~f~~~~~~~~~~~lKYIDPsYmIRsvpANa~D~vyC~~LaqnAVHaaMAG~Tg~~Vg~~n~~~v~vPI~-~~~~~rk  433 (486)
T PTZ00286        355 VEAWLRANKEKYPQGTVKYIDPSYMIRACPPSSNDALFCTTLATLAVHEAMAGATGCIIAMRYNNYILVPIK-AATSVRR  433 (486)
T ss_pred             HHHHHHHCCCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECHH-HHHHHCC
T ss_conf             999998647546764058766874265278993077799999999888985677773898887989996348-9852075


Q ss_pred             CCCCCHHHHHHHHHHCC
Q ss_conf             20777589999998448
Q gi|254780227|r  407 VFDTNTPWFSDILRHTG  423 (426)
Q Consensus       407 ~vd~~~~~~~~~l~~~g  423 (426)
                      .|||++.+|+++|+.|-
T Consensus       434 ~Vd~~g~lW~~Vle~T~  450 (486)
T PTZ00286        434 VVSLRGALWRQVREITV  450 (486)
T ss_pred             CCCCCCHHHHHHHHHHH
T ss_conf             15998378999999982


No 5  
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828    6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=100.00  E-value=0  Score=695.60  Aligned_cols=297  Identities=28%  Similarity=0.342  Sum_probs=275.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r   31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN  110 (426)
Q Consensus        31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~  110 (426)
                      |||||||||||||||||||++|++|..  .+.||||+++||.||++++   +.+++...|.++.+.|||+|+|+|+..|+
T Consensus         1 kIgiLTSGGDAPGMNaAIRavvr~A~~--~g~EVyG~~~GY~GLi~g~---i~~l~~~~V~~Ii~~GGT~L~tAR~~EFK   75 (302)
T TIGR02482         1 KIGILTSGGDAPGMNAAIRAVVRTAIY--QGIEVYGIRRGYKGLINGK---IVPLKSKAVSGIISKGGTILGTARCPEFK   75 (302)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCCCCCCE---EECCCCCCHHCCCCCCCCEEECCCCCCCC
T ss_conf             916751788870256899999999998--1970689873542130441---34246644001001588333114785456


Q ss_pred             CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCH
Q ss_conf             30111012345674569999999986399889994882578999999999985189962885222234772221146335
Q gi|254780227|r  111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGA  190 (426)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGf  190 (426)
                      +++.++            +++++|++++||+|||||||||+.+|++|+++     +++||||+|.||||||++|||||||
T Consensus        76 ~~evR~------------kA~~nLK~~GI~~LVViGGDGSy~GA~~L~~~-----gg~~~iGlPGTIDNDI~~TDyTIGf  138 (302)
T TIGR02482        76 TEEVRE------------KAVENLKKLGIEALVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIQGTDYTIGF  138 (302)
T ss_pred             CHHHHH------------HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH-----CCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf             878999------------99999887488668998684406889999971-----7984787458502566643225566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf             65999999999999987751666169999769874289999874014332310111111100014576523287865598
Q gi|254780227|r  191 LTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL  270 (426)
Q Consensus       191 dTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~  270 (426)
                      |||+|++.++||+|+.|| +||+|.||||||||||||||+++||||||                    +.+++||.+.++
T Consensus       139 DTALNTi~~avdKiRDTA-~SHeR~f~iEVMGR~aGdLAl~aaiAtGA--------------------E~i~~pE~~~~~  197 (302)
T TIGR02482       139 DTALNTILDAVDKIRDTA-TSHERAFVIEVMGRHAGDLALYAAIATGA--------------------EIIIIPEFDLDI  197 (302)
T ss_pred             HHHHHHHHHHHHHHHCCC-CCCCCEEEEEECCCCHHHHHHHHHHHHHH--------------------HEEECCCCCCCH
T ss_conf             667437998776542130-12165689995078557899999886401--------------------021158888898


Q ss_pred             HHHHHHHHHHHHC-CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHCCCCEEEECC
Q ss_conf             9999999998502-8953899504211111101232011222223444544355664899999999-8718743188418
Q gi|254780227|r  271 EVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFA-NMIKAERSIVQKS  348 (426)
Q Consensus       271 ~~~~~~i~~~~~~-~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~-~~~~~~~~~~~~l  348 (426)
                      +++++++|+++++ |.+++|+++|+...                           +-+..++++++ ++.+.+ +|+++|
T Consensus       198 ~~l~~~~k~~~~~~k~~SiI~~ae~~~~---------------------------g~~~e~A~~iene~~g~~-tR~~vL  249 (302)
T TIGR02482       198 EELIERIKEQREAGKKNSIIIVAEGNIL---------------------------GNAKEVAKKIENEKTGIE-TRVTVL  249 (302)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEEEEEC---------------------------CCHHHHHHHHHCCCCCCE-EEEEEE
T ss_conf             9999999999860899618999951014---------------------------776788876304789842-899997


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEE
Q ss_conf             86123558986799999999999999997799866999985986996430
Q gi|254780227|r  349 GYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIK  398 (426)
Q Consensus       349 Gy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~  398 (426)
                      ||.||||+||+|||.||++||.+|||++++|++|+|+++++++.+..||+
T Consensus       250 GH~QRGG~P~a~DR~LAs~lG~~AvE~L~~g~~gvmig~~~nkiv~~Pi~  299 (302)
T TIGR02482       250 GHTQRGGSPSAFDRILASRLGAKAVELLLEGKSGVMIGLQNNKIVAVPIE  299 (302)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCC
T ss_conf             56647979648788899999999999986398203688537825738810


No 6  
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and  PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00  E-value=0  Score=654.57  Aligned_cols=327  Identities=24%  Similarity=0.281  Sum_probs=287.0

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
                      ||||||||||||||||++||++++++..  .+++|||+++||+||+++++   .+++++++++|.++|||+|||||++++
T Consensus         1 krIaIltsGG~~pGmNa~ir~vv~~a~~--~g~~v~Gi~~G~~GL~~~~~---~~L~~~~v~~i~~~GGt~LgssR~~~~   75 (338)
T cd00363           1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA--EGLEVYGIYEGYAGLVEGDI---KELDWESVSDIINRGGTIIGSARCKEF   75 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHCCCCE---EECCHHHHHHHHHCCCEECCCCCCCCC
T ss_conf             9599986888866888999999999997--79999998257777707981---629999998798569813167678766


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG  189 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG  189 (426)
                      .+            ++.+++++++|++++||+|++|||||||++|++|++++.+++++++||||||||||||++||+|||
T Consensus        76 ~~------------~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDl~~td~t~G  143 (338)
T cd00363          76 RT------------EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIG  143 (338)
T ss_pred             CC------------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             78------------677899999999829998999789269999999999888528995189841034789978854888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             56599999999999998775166616999976987428999987401433231011111110001457652328786559
Q gi|254780227|r  190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFN  269 (426)
Q Consensus       190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~  269 (426)
                      ||||+++++++++++++||.| |+||||||+|||+|||||++++||++|                    |+|||||.|++
T Consensus       144 f~TA~~~~~~ai~~i~~ta~S-~~rv~iVEvMGR~aG~lAl~aala~ga--------------------d~iliPE~~~~  202 (338)
T cd00363         144 FDTALKTIVEAIDRIRDTASS-HQRTFVVEVMGRHCGDIALEAGLATGA--------------------DIIFIPEEPAA  202 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCHHHHHHHHHCCC--------------------CEEEECCCCCC
T ss_conf             799999999999999987406-787799996898833899998874299--------------------88995486777


Q ss_pred             ---HHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             ---8999999999850-289538995042111111012320112222234445443556648999999998718743188
Q gi|254780227|r  270 ---LEVEIERLSKVME-KKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIV  345 (426)
Q Consensus       270 ---~~~~~~~i~~~~~-~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~  345 (426)
                         ++.+++.++++.+ +++|++||||||+.....                      ....++.|+++++++++.+ .|+
T Consensus       203 ~~~~~~~~~~i~~~~~~gk~~~iVvVaEG~~~~~~----------------------~~~~~~~l~~~i~~~~~~~-~r~  259 (338)
T cd00363         203 DEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDFIP----------------------KPITEKLLAKLVEERLGFD-TRA  259 (338)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC----------------------CCCHHHHHHHHHHHHHCCC-EEE
T ss_conf             40399999999999974897279999799855568----------------------7435899999999985970-545


Q ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC---CEEEEEEEHHHHCCCCCCCC--CHHHHHHH
Q ss_conf             418861235589867999999999999999977998669999859---86996430898526882077--75899999
Q gi|254780227|r  346 QKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERE---NNILRIIKFEDIRGGRVFDT--NTPWFSDI  418 (426)
Q Consensus       346 ~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~---~~~~~~i~~~~i~~~k~vd~--~~~~~~~~  418 (426)
                      ++|||+||||.||++||.+|++||+.||+++++|+||+|+++++.   ...++|++ +.+...|.|++  +.+.|+..
T Consensus       260 ~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~G~tg~mv~i~~~~~~~i~~vPl~-~~~~~~k~v~~dl~~~~f~~~  336 (338)
T cd00363         260 TVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGTPVGIQNLNENQVVRHPLT-EAVNMTKRVGVDLEGRPFKKF  336 (338)
T ss_pred             CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCHH-HHHHHCCCCCHHHCCCCHHHH
T ss_conf             20489885899987899999999999999998499993699995889979961299-997326889934456965675


No 7  
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00  E-value=0  Score=654.29  Aligned_cols=315  Identities=24%  Similarity=0.319  Sum_probs=285.4

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             33799983687751489999999999998569978999838366010799130462698888746407874003367888
Q gi|254780227|r   29 AHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKL  108 (426)
Q Consensus        29 ~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~  108 (426)
                      .||||||||||||||||++||++++++..  .+++|||+++||+||+++++   .+++|+++++|.++|||+|||||+++
T Consensus         2 ~kriaIltsGG~~pGmNa~ir~vv~~a~~--~g~~v~G~~~G~~GL~~~~~---~~L~~~~v~~i~~~GGt~LgtsR~~~   76 (323)
T PRK03202          2 MKKIGVLTSGGDAPGMNAAIRGVVRTAIS--EGLEVYGIYNGYLGLLEGDI---IDLDRASVSDLINRGGTALGSARYPE   76 (323)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHCCCCE---EECCHHHHHHHHHCCCCEEEECCCCC
T ss_conf             86699993688867789999999999997--89999999167788648985---76999999999847986742048887


Q ss_pred             CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             65301110123456745699999999863998899948825789999999999851899628852222347722211463
Q gi|254780227|r  109 TNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSL  188 (426)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~ti  188 (426)
                      +..+            +..++++++|++++||+|++||||||+++|++|++     .++++||||||||||||++||+||
T Consensus        77 ~~~~------------~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~-----~~~i~vigIPkTIDNDl~~tD~t~  139 (323)
T PRK03202         77 FKLE------------EGRAKAIENLKKHGIDALVVIGGDGSYDGAKKLSE-----EYGIPCIGIPKTIDNDLAGTDYTI  139 (323)
T ss_pred             CCCH------------HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH-----CCCCCEEEECCCCCCCCCCCCCCC
T ss_conf             7788------------89999999999829999999379469999999984-----379748972144468987776788


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             35659999999999999877516661699997698742899998740143323101111111000145765232878655
Q gi|254780227|r  189 GALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSF  268 (426)
Q Consensus       189 GfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~  268 (426)
                      |||||+++++++++++++||.| |+|+||||+|||+|||||++++||++|                    |+|||||.||
T Consensus       140 Gf~TA~~~~~~aid~i~~ta~s-~~rv~ivEvMGR~aG~lAl~~~lA~ga--------------------d~iliPE~~~  198 (323)
T PRK03202        140 GFDTALNTVVEAIDKLRDTASS-HERVFIVEVMGRHAGDLALAAGLAGGA--------------------ELILIPEVPF  198 (323)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCHHHHHHHHHCCC--------------------CEEEECCCCC
T ss_conf             8899999999998665776506-687799993586626899998763289--------------------8999249999


Q ss_pred             CHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             98999999999850-28953899504211111101232011222223444544355664899999999871874318841
Q gi|254780227|r  269 NLEVEIERLSKVME-KKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQK  347 (426)
Q Consensus       269 ~~~~~~~~i~~~~~-~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~~~  347 (426)
                      +++++++.++++++ +++|++||||||+...                           -+++|+++++++++.+ +|+++
T Consensus       199 ~~~~~~~~i~~~~~~~k~~~iivvaEG~~~~---------------------------~g~~la~~i~~~~~~~-~R~~~  250 (323)
T PRK03202        199 DIEEFLAKVKAGIKKGKKHCIVVVAEGIKDA---------------------------DGKELAKEIEEETGLE-TRVTV  250 (323)
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEEECCCCCC---------------------------CHHHHHHHHHHHHCCC-EEEEC
T ss_conf             9999999999999769982899996998877---------------------------8999999999983983-79803


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCCCHHHHHH
Q ss_conf             8861235589867999999999999999977998669999859869964308985268820777589999
Q gi|254780227|r  348 SGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSD  417 (426)
Q Consensus       348 lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k~vd~~~~~~~~  417 (426)
                      |||+||||.|+++||.+|++||+.||+++++|++|+||++.++++.++|++ +++...|++|++  |++.
T Consensus       251 lG~~qRgg~p~a~Dr~~a~~lG~~Av~~~~~G~tg~mv~~~~~~~~~vpl~-~v~~~~k~v~~~--~i~~  317 (323)
T PRK03202        251 LGHIQRGGSPTASDRVLASRMGAAAVELLLEGKGGVMVGIYNNKIVHVPLD-EVANKEKKVPPD--LIEL  317 (323)
T ss_pred             CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEHH-HHHCCCCCCCHH--HHHH
T ss_conf             786774799987899999999999999997599987999999999997799-996488889989--9986


No 8  
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00  E-value=0  Score=650.70  Aligned_cols=312  Identities=25%  Similarity=0.326  Sum_probs=282.5

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
                      ||||||||||||||||++||++++++.  +.+++||||++||+||++++   +.+++|.++++|.++|||+|||||+.++
T Consensus         1 KrIaIltsGGd~pGmNa~Ir~vv~~a~--~~g~~v~Gi~~G~~GL~~~~---~~~l~~~~v~~i~~~GGt~LgtsR~~~~   75 (317)
T cd00763           1 KRIGVLTSGGDAPGMNAAIRGVVRSAI--AEGLEVYGIRDGYAGLIAGD---IVPLDRYSVSDIINRGGTFLGSARFPEF   75 (317)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHCCCC---EEECCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             959999578885688999999999998--78999999825677870798---1628999998798659950146778754


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG  189 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG  189 (426)
                      ..            ++..++++++|++++||+|++||||||+++|+.|+|+      +++|||||||||||+++||+|||
T Consensus        76 ~~------------~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~l~e~------~i~vigIPkTIDNDi~gtd~t~G  137 (317)
T cd00763          76 KD------------EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH------GFPCVGLPGTIDNDIPGTDYTIG  137 (317)
T ss_pred             CC------------HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHC------CCCEEEECCCCCCCCCCCCCCCC
T ss_conf             55------------6789999999998299989995694589999999974------99779713544678888787868


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             56599999999999998775166616999976987428999987401433231011111110001457652328786559
Q gi|254780227|r  190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFN  269 (426)
Q Consensus       190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~  269 (426)
                      ||||+++++++++++++||. +|+|+||||+|||+|||||++++||++|                    |+|||||.||+
T Consensus       138 fdTAv~~~~~aid~i~~ta~-s~~rv~ivEvMGR~aG~lAl~a~lA~ga--------------------d~iliPE~~~~  196 (317)
T cd00763         138 FDTALNTVVEAIDRIRDTSS-SHQRISVVEVMGRHCGDIALAAGIAGGA--------------------EFIVIPEAEFD  196 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHHHCCC--------------------CEEEECCCCCC
T ss_conf             89999999999999999850-5787699996897601899987875389--------------------89996899999


Q ss_pred             HHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             89999999998502-89538995042111111012320112222234445443556648999999998718743188418
Q gi|254780227|r  270 LEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKS  348 (426)
Q Consensus       270 ~~~~~~~i~~~~~~-~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~~~l  348 (426)
                      ++++++.+++++++ +++++||||||+..                             +..|+++++++.+.+ +|+++|
T Consensus       197 ~~~~~~~i~~~~~~~k~~~iivvaEG~~~-----------------------------~~~~a~~i~~~~~~~-~r~~il  246 (317)
T cd00763         197 REEVANRIKAGIERGKKHAIVVVAEGVYD-----------------------------VDELAKEIEEATGFE-TRATVL  246 (317)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCCCC-----------------------------HHHHHHHHHHHHCCC-EEECCC
T ss_conf             99999999999982798079999799877-----------------------------899999999872984-210412


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             86123558986799999999999999997799866999985986996430898526882077758999999
Q gi|254780227|r  349 GYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDIL  419 (426)
Q Consensus       349 Gy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k~vd~~~~~~~~~l  419 (426)
                      ||+||||+||++||++|++||..||+++++|++|+||++++++++++|++ +.+...|++|+   .|-++.
T Consensus       247 Gh~qRgg~psa~Dr~la~~lG~~Av~~~~~G~~g~mV~~~~~~~~~~pl~-e~~~~~k~~~~---~~~~l~  313 (317)
T cd00763         247 GHIQRGGSPTAFDRILASRMGAYAVELLLAGKGGLAVGIQNEQLVHHDII-DAIENMKPFKK---DWLALA  313 (317)
T ss_pred             CHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEHH-HHHCCCCCCCH---HHHHHH
T ss_conf             25552899884589999999999999997699985999999999995599-99704789999---999999


No 9  
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161    Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).   Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis.   For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=645.95  Aligned_cols=334  Identities=23%  Similarity=0.291  Sum_probs=285.4

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
                      ||||||||||||||||||||+|||++  ++.|++||.+|+||+||+++-- .+.++.|++|++|++.|||+|||+|++.|
T Consensus         1 k~IgVlTSGGDAqGMNAAVRAVVR~a--I~~Gc~VY~irEGY~GLV~GGD-~I~~~~W~DV~g~l~~GGT~IGtARC~~F   77 (777)
T TIGR02478         1 KRIGVLTSGGDAQGMNAAVRAVVRMA--IYVGCRVYAIREGYEGLVDGGD-NIEELSWEDVRGILSLGGTLIGTARCKEF   77 (777)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHH--HHHCCEEEEEECCCCCCCCCCC-HHHHCCCCCCCCHHHCCCCEEEEEEECCC
T ss_conf             90277723878742124889998988--7319979999707645322242-02111442312233448733420321544


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH-----------------HHCCCCCEEEE
Q ss_conf             5301110123456745699999999863998899948825789999999999-----------------85189962885
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYL-----------------KEKNYNITVVG  172 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~-----------------~~~~~~i~vig  172 (426)
                      ++-++|.+            +++||-+++||.|||||||||+++|..|-+++                 .+....+.|+|
T Consensus        78 ReR~GRLk------------AA~Nl~~~gId~LvViGGDGSLTGAd~FR~EW~~L~~EL~~~g~It~Eq~~~~~~L~IvG  145 (777)
T TIGR02478        78 RERPGRLK------------AARNLIKRGIDALVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAKEHRHLTIVG  145 (777)
T ss_pred             CCCHHHHH------------HHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHCCCCCCEEE
T ss_conf             58866899------------999988719945999889756888887763041588997315866479995078640677


Q ss_pred             ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             22223477222114633565999999999999987751666169999769874289999874014332310111111100
Q gi|254780227|r  173 LPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFS  252 (426)
Q Consensus       173 iPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~  252 (426)
                      +-.+||||+++||.|||-|||+++++|+||.|..||.||+ |.|||||||||||||||+||+||+||+            
T Consensus       146 lVGSIDND~~gTD~TIGadSaLhRIcEa~D~i~~TA~SHq-R~FVvEVMGRHCGyLAL~AaiAtgADy------------  212 (777)
T TIGR02478       146 LVGSIDNDMCGTDMTIGADSALHRICEAIDAISSTAQSHQ-RAFVVEVMGRHCGYLALMAAIATGADY------------  212 (777)
T ss_pred             EEECCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHCCCCCC-CEEEEEECCCCHHHHHHHHHHHHHHCE------------
T ss_conf             5211016756478630224123347654330440430017-659998748842589999998862200------------


Q ss_pred             CCCCCCCCCCCCCCCCCH----HHHHHHHHH-HHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             014576523287865598----999999999-850289538995042111111012320112222234445443556648
Q gi|254780227|r  253 PDFKGIDGVYLPEMSFNL----EVEIERLSK-VMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVG  327 (426)
Q Consensus       253 ~~~~~~d~iliPE~~~~~----~~~~~~i~~-~~~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~  327 (426)
                              |+|||.|.+-    |+++..+++ |.++|+..+|+||||+.+....+                      -..
T Consensus       213 --------vFiPE~PP~~~~W~d~lc~~l~~~R~~GkR~~iViVAEGA~D~~~~p----------------------Its  262 (777)
T TIGR02478       213 --------VFIPERPPEEGDWEDQLCAKLKRNRKAGKRKNIVIVAEGAIDRELNP----------------------ITS  262 (777)
T ss_pred             --------EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECEECCCCCC----------------------CCH
T ss_conf             --------22478689888768899899888773689640799842105467779----------------------688


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---C----------CCEEEEEECCCEEE
Q ss_conf             9999999987187431884188612355898679999999999999999779---9----------86699998598699
Q gi|254780227|r  328 SWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISG---I----------SGVTGEDERENNIL  394 (426)
Q Consensus       328 ~~La~~i~~~~~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G---~----------sgvmv~i~~~~~~~  394 (426)
                      +.+.+.|.++++. ++|+++|||+||||.||+|||++|++||+.||+++|+.   .          -++|+++..++..-
T Consensus       263 e~VK~vl~~~L~l-DtRiT~LGHVQRGG~PsA~DR~Lat~~GvEAV~avL~~tpe~~GavvtGqk~ps~VI~l~gNkI~R  341 (777)
T TIGR02478       263 EDVKDVLVERLGL-DTRITVLGHVQRGGAPSAYDRILATLQGVEAVLAVLESTPETEGAVVTGQKTPSPVISLRGNKIVR  341 (777)
T ss_pred             HHHHHHHHHHCCC-CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEECCCEEEE
T ss_conf             9898886440184-024766052246887228999999864499999997268776874761543555147506870221


Q ss_pred             EEEEHHHHCCCCCCC--CCHHHHHHHHHHCC
Q ss_conf             643089852688207--77589999998448
Q gi|254780227|r  395 RIIKFEDIRGGRVFD--TNTPWFSDILRHTG  423 (426)
Q Consensus       395 ~~i~~~~i~~~k~vd--~~~~~~~~~l~~~g  423 (426)
                      .|+- +++...|.|.  ++.+-|.+++..-|
T Consensus       342 ~PL~-~~V~~T~~V~~~i~~~~f~~A~~LRg  371 (777)
T TIGR02478       342 KPLV-EAVRQTKTVAKAIKERRFDEAVRLRG  371 (777)
T ss_pred             CHHH-HHHHHHHHHHHHHHCCCCHHHHHCCC
T ss_conf             3188-99998999899873177545872357


No 10 
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183    Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) .   For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=100.00  E-value=0  Score=642.63  Aligned_cols=350  Identities=22%  Similarity=0.268  Sum_probs=303.5

Q ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCC
Q ss_conf             48763379998368775148999999999999856997899983836601079913046269888874640787-40033
Q gi|254780227|r   25 KDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGN  103 (426)
Q Consensus        25 ~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~Lgt  103 (426)
                      .....-||||+.|||||||.||||+|+++.++..+++.++|||+.|..||+++++++++   .+.++.++|+|| ++|||
T Consensus        70 ~~~~~l~~GviLSGGqAPGGHNVi~GLFD~lk~~np~SkLyGF~~Gp~GL~~~~~~elT---~~~i~~YRN~GGFD~iGS  146 (566)
T TIGR02477        70 DEHQPLKVGVILSGGQAPGGHNVISGLFDALKKLNPESKLYGFLGGPEGLLDNNYVELT---KELIDEYRNTGGFDIIGS  146 (566)
T ss_pred             HCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEC---HHHHHCCCCCCCEEEECC
T ss_conf             21687568898757989771146777899999737767200102074443158715763---788722278877420016


Q ss_pred             CCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-
Q ss_conf             6788865301110123456745699999999863998899948825789999999999851899628852222347722-
Q gi|254780227|r  104 SRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII-  182 (426)
Q Consensus       104 sR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~-  182 (426)
                      +|+|+.             .++++++++++.++++||+|||||||||++.|+.|||||.+++++++|||||||||.||. 
T Consensus       147 GRtKI~-------------T~Eq~~~al~~~k~l~LdgLVIIGGDdSNTnAA~LAEyF~~~~~~t~viGVPKTIDGDLKn  213 (566)
T TIGR02477       147 GRTKIE-------------TEEQFAKALETAKKLKLDGLVIIGGDDSNTNAALLAEYFAKKGLKTQVIGVPKTIDGDLKN  213 (566)
T ss_pred             CCCCCC-------------CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCC
T ss_conf             854556-------------8889999999987608964899747986799999999999738992278640254721102


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHH--------------
Q ss_conf             -21146335659999999999999877516661699997698742899998740143323101111--------------
Q gi|254780227|r  183 -PIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYID--------------  247 (426)
Q Consensus       183 -~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~--------------  247 (426)
                       ++|.|||||||++.++|+|.||+.||.|+.++||||++|||+|+|+||+|||+|+||+|+|.|+.              
T Consensus       214 ~~iEtsFGFDTacK~YSElIGNi~rDA~S~~KYwHFIrLMGRsASHiaLECALqThPN~ciigEEv~~Kk~tL~~~~~~I  293 (566)
T TIGR02477       214 QYIETSFGFDTACKVYSELIGNICRDALSAKKYWHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQVTDYI  293 (566)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEHHHHHHHHCCCHHHHHHHH
T ss_conf             71045876104788998875578887664287136777437631589998732147976751233553258488999999


Q ss_pred             ---HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC----C--CCEEEEEECCCCCCC-------------CHHHHH
Q ss_conf             ---111000145765232878655989999999998502----8--953899504211111-------------101232
Q gi|254780227|r  248 ---GFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK----K--GSVAIFVSEGACRDV-------------IMDNRL  305 (426)
Q Consensus       248 ---~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~~----~--~~~vIVvsEG~~~~~-------------~~~~~~  305 (426)
                         ...+...+++..+|||||..+++.+++..+-+.++.    .  .|.-|- .|+...-.             ..+...
T Consensus       294 ~d~i~~Ra~~G~NfGvvLiPEGLIEFIPEv~~L~~ELn~~L~~~~~~F~~i~-~~~~~~~~~~kLS~~~~~~f~~LP~~I  372 (566)
T TIGR02477       294 ADVIVKRAAKGKNFGVVLIPEGLIEFIPEVQALIKELNNLLAQNVEEFSKIK-FEGRKDLVKSKLSPESKALFESLPETI  372 (566)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCEECCHHHHHHHHHHHHHHHCCCCHHCCCC-HHHHHHHHHHHCCHHHHHHHHHCCHHH
T ss_conf             9999999856894279997698542026688999999865404762001467-788999998626888999974078679


Q ss_pred             HCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC------C-----EEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             01122--2223444544355664899999999871874------3-----188418861235589867999999999999
Q gi|254780227|r  306 SSGEK--IKRDSFGHILLDKMNVGSWFADKFANMIKAE------R-----SIVQKSGYFARSAPSGSEDLSLIKKMVVLA  372 (426)
Q Consensus       306 ~~~~~--~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~------~-----~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~A  372 (426)
                      ..+-.  .+||+|||+++|+++++++|+++|+.++..+      +     ...|++||+.|||.||.||+.|||.||+.|
T Consensus       373 ~~QLLnil~RDpHGNv~VS~IeTEKLLi~lV~~~l~~~~~~g~yK~~~F~a~~HFFGYEGRca~PSnFDs~YcY~LGy~A  452 (566)
T TIGR02477       373 RKQLLNILDRDPHGNVQVSQIETEKLLIELVQTELAKRKKEGEYKGKKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTA  452 (566)
T ss_pred             HHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
T ss_conf             99998752679988537421127899999999999999863664677777546665530112677532103435789999


Q ss_pred             HHHHHCCCCCEEEEEECCC
Q ss_conf             9999779986699998598
Q gi|254780227|r  373 VDSAISGISGVTGEDEREN  391 (426)
Q Consensus       373 v~~~~~G~sgvmv~i~~~~  391 (426)
                      ..++.+|.||+|++++|-.
T Consensus       453 ~~Ll~~g~TGYm~~i~NL~  471 (566)
T TIGR02477       453 AILLANGLTGYMSTIKNLT  471 (566)
T ss_pred             HHHHHCCCCEEEEEECCCC
T ss_conf             9999716760455500115


No 11 
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00  E-value=0  Score=620.75  Aligned_cols=336  Identities=23%  Similarity=0.272  Sum_probs=280.1

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             63379998368775148999999999999856997899983836601079913046269888874640787400336788
Q gi|254780227|r   28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK  107 (426)
Q Consensus        28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~  107 (426)
                      ++||||||||||||||||++||++|+++.  +.|++|||+++||+||+++.. .+.+++|++|++|.+.|||+|||+|++
T Consensus         2 ~~K~IaVLTSGGDapGMNAAIRAvVr~ai--~~G~ev~gI~~Gy~GLv~Ggd-~i~~l~~~dV~gil~~GGTiLGTaR~~   78 (762)
T cd00764           2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGI--YVGAKVFFVYEGYEGLVKGGD-YIKQAEWESVSNWLQEGGTIIGSARCK   78 (762)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHH--HCCCEEEEECHHCCHHHCCCC-CEEECCHHHHCCHHHCCCEEECCCCCC
T ss_conf             99889997987683467799999999999--869899998610017454986-667898567469775698465777897


Q ss_pred             CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH-------H----------CCCCCEE
Q ss_conf             8653011101234567456999999998639988999488257899999999998-------5----------1899628
Q gi|254780227|r  108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLK-------E----------KNYNITV  170 (426)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~-------~----------~~~~i~v  170 (426)
                      .|+++++++            ++++||.+++||+||+||||||+++|+.|.+++.       +          +..+++|
T Consensus        79 ~F~~~egr~------------~a~~nL~~~gIdaLiVIGGDGSltGA~~fr~ew~~ll~eL~~~G~i~~~~~~~~~~l~i  146 (762)
T cd00764          79 EFREREGRL------------QAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNI  146 (762)
T ss_pred             CCCCHHHHH------------HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCE
T ss_conf             545776899------------99999998099889998795378777776655467899998727642344302578757


Q ss_pred             EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             85222234772221146335659999999999999877516661699997698742899998740143323101111111
Q gi|254780227|r  171 VGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFI  250 (426)
Q Consensus       171 igiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~  250 (426)
                      ||+|+|||||+++||+|||||||+++++++||+|++||. ||.|+|||||||||||||||++|+|+||            
T Consensus       147 vGipgTIDNDi~gTD~TIG~dTAln~i~eaiD~I~~TA~-SH~R~fVVEVMGR~cG~LAL~agiA~GA------------  213 (762)
T cd00764         147 VGMVGSIDNDFCGTDMTIGTDSALHRICEVVDAITTTAQ-SHQRTFVLEVMGRHCGYLALVSGLATGA------------  213 (762)
T ss_pred             EEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHHHHHHHHCCC------------
T ss_conf             884377346898875511388499999999987664476-4487799997787711999998764188------------


Q ss_pred             HHCCCCCCCCCCCCCCCCC---HHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCH
Q ss_conf             0001457652328786559---899999999985-028953899504211111101232011222223444544355664
Q gi|254780227|r  251 FSPDFKGIDGVYLPEMSFN---LEVEIERLSKVM-EKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNV  326 (426)
Q Consensus       251 ~~~~~~~~d~iliPE~~~~---~~~~~~~i~~~~-~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i  326 (426)
                              |.|+|||.|++   .+.+++.+++.. .++++.+|+||||+......+                      -.
T Consensus       214 --------D~ilIPE~p~~~~~~~~~~~~l~~~r~~Gkr~~IViVAEGa~d~~~~~----------------------i~  263 (762)
T cd00764         214 --------DWIFIPERPPEDGWEDQMCRRLSEHRSRGKRLNIIIVAEGAIDDQLKP----------------------IT  263 (762)
T ss_pred             --------CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----------------------HH
T ss_conf             --------889956889996419999999999997599851899958867788886----------------------27


Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCEEEEEEEHHHHC
Q ss_conf             89999999987187431884188612355898679999999999999999779---986699998598699643089852
Q gi|254780227|r  327 GSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISG---ISGVTGEDERENNILRIIKFEDIR  403 (426)
Q Consensus       327 ~~~La~~i~~~~~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G---~sgvmv~i~~~~~~~~~i~~~~i~  403 (426)
                      ++.+++.++++++.+ +|+++|||+||||+||+|||++|++||..||+++++.   ...+|+++..++.+-.|+- +.+.
T Consensus       264 ~~~v~~~i~~~~g~d-tRvtvLGHvQRGGsPsa~DRiLat~mG~~AV~alle~tp~t~~~~i~~~~n~i~r~pL~-e~V~  341 (762)
T cd00764         264 SEDVKDLVVERLGLD-TRVTTLGHVQRGGTPSAFDRILASLMGVEAVMALLEATPDTPACVVSLNGNKAVRLPLM-ECVQ  341 (762)
T ss_pred             HHHHHHHHHHHCCCC-EEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEECCHH-HHHH
T ss_conf             999999999860985-15542130047999974888999999999999998269999885799617756853289-9999


Q ss_pred             CCCCCC--CCHHHHHHHHHHCC
Q ss_conf             688207--77589999998448
Q gi|254780227|r  404 GGRVFD--TNTPWFSDILRHTG  423 (426)
Q Consensus       404 ~~k~vd--~~~~~~~~~l~~~g  423 (426)
                      ..|.|.  .+.+.|.++++..|
T Consensus       342 ~t~~v~~a~~~k~f~~a~~lr~  363 (762)
T cd00764         342 LTKDVQKAMDEKRFDEAAALRG  363 (762)
T ss_pred             HHHHHHHHHHCCCHHHHHHHCC
T ss_conf             9999999997227899997437


No 12 
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00  E-value=0  Score=619.41  Aligned_cols=306  Identities=28%  Similarity=0.359  Sum_probs=269.5

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             63379998368775148999999999999856997899983836601079913046269888874640787400336788
Q gi|254780227|r   28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK  107 (426)
Q Consensus        28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~  107 (426)
                      ..||||||||||||||||++||++++++...  +++|||+++||+||++++   +.++++.+++.+.+.|||+|||||+.
T Consensus         1 ~~kkIaIlTSGGdaPGmNa~Iravvr~a~~~--g~eV~Gi~~Gy~GL~~~~---i~~l~~~~v~~~~~~GGT~lgssr~~   75 (347)
T COG0205           1 MMKKIAILTSGGDAPGMNAVIRAVVRTAIKE--GLEVFGIYNGYLGLLEGD---IKPLTREDVDDLINRGGTFLGSARFP   75 (347)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCHHHHCCCC---CEECCHHHHHHHHHCCCEEEEECCCC
T ss_conf             9836999846889830769999999999976--978999943323420786---12144201467986598687547888


Q ss_pred             CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             86530111012345674569999999986399889994882578999999999985189962885222234772221146
Q gi|254780227|r  108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS  187 (426)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t  187 (426)
                      .+++++.+            ++++++|++++||+|++||||||+++|+.|+|++     +++|||||||||||+++||+|
T Consensus        76 ~~~~~e~~------------~~~~~~l~~~gId~LvvIGGDGS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~t  138 (347)
T COG0205          76 EFKTEEGR------------KVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFT  138 (347)
T ss_pred             CCCCHHHH------------HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHC-----CCCEEECCCCCCCCCCCCCCC
T ss_conf             76567799------------9999999983998899978887389999999735-----986896688702788645267


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             33565999999999999987751666169999769874289999874014332310111111100014576523287865
Q gi|254780227|r  188 LGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMS  267 (426)
Q Consensus       188 iGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~  267 (426)
                      ||||||+++++++|++++.|+ ++|+|+|||||||||||||||+||+|++|                    |+++|||.+
T Consensus       139 iGfdTA~~~~~eaid~l~dta-ssh~r~~iveVMGR~aG~lAl~aglA~~a--------------------~~ilipE~~  197 (347)
T COG0205         139 IGFDTALETAVEAIDNLRDTA-SSHERIFIVEVMGRHAGWLALAAGLATGA--------------------DIILIPEEP  197 (347)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECCCCHHHHHHHHHHHCCC--------------------CEEEECCCC
T ss_conf             558889999999999999997-57687899996286825999999885399--------------------899954743


Q ss_pred             CCH--HHHHHHHHHHH--HCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--C
Q ss_conf             598--99999999985--02895389950421111110123201122222344454435566489999999987187--4
Q gi|254780227|r  268 FNL--EVEIERLSKVM--EKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKA--E  341 (426)
Q Consensus       268 ~~~--~~~~~~i~~~~--~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~--~  341 (426)
                      ++.  ++++..+++..  ..+++++|+++||+......              ++          ..+...+++++..  .
T Consensus       198 ~~~~~~~~~~~i~~~~~~~gk~~~iIvvaEG~~~~~~~--------------~~----------~~~~~~i~~~~~~~~~  253 (347)
T COG0205         198 ADLIIEELIAEIKAKREARGKKHAIIVVAEGAIDQIGE--------------NG----------AELLAAIEELLALGDF  253 (347)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCC--------------CH----------HHHHHHHHHHHHHCCC
T ss_conf             23018999999999999728774499975500014553--------------11----------3677789998630564


Q ss_pred             CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHH
Q ss_conf             31884188612355898679999999999999999779986699998598699643089
Q gi|254780227|r  342 RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFE  400 (426)
Q Consensus       342 ~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~  400 (426)
                      .+|++.|||+||||.|++|||.||++||..||+++++|++|+|+++++++.++.|++..
T Consensus       254 ~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~~g~~~~~v~i~~~~~v~~~~~~~  312 (347)
T COG0205         254 ETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKTGYMVGIRNNKIVHVPIDEA  312 (347)
T ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEHHHHH
T ss_conf             15898446333688896578999999999999999759988559974783676205655


No 13 
>pfam00365 PFK Phosphofructokinase.
Probab=100.00  E-value=0  Score=591.11  Aligned_cols=278  Identities=28%  Similarity=0.333  Sum_probs=251.0

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
                      ||||||||||||||||++|+++++++.  +.+++||||++||+||++++   +.++++.++.+|.++|||+|||||++++
T Consensus         1 KrI~IltsGG~~pG~Na~i~~vv~~a~--~~g~~v~G~~~G~~GL~~~~---~~~l~~~~v~~~~~~gGt~LgtsR~~~~   75 (279)
T pfam00365         1 KKIGVLTSGGDAPGMNAAIRAVVRSAI--AEGLEVYGIYEGYAGLVAGN---IKQLDWESVSDIIQRGGTFIGSARCPEF   75 (279)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHCCC---EEECCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             959999078886678999999999998--77999999905677882698---2409888898899659841246677755


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG  189 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG  189 (426)
                      ..+            +..++++++|++++||+|++|||||||++|++|+++     ++++|||||||||||+++||+|||
T Consensus        76 ~~~------------~~~~~~~~~l~~~~Id~li~IGGd~S~~~a~~L~~~-----~~i~vigIPkTIDNDl~~td~s~G  138 (279)
T pfam00365        76 RER------------EGRLKAAENLKKHGIDALVVIGGDGSYTGADLLTSE-----HGFNCVGLPGTIDNDICGTDYTIG  138 (279)
T ss_pred             CCH------------HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             456------------679999999998489979996695689999999997-----299789820345689877767878


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             56599999999999998775166616999976987428999987401433231011111110001457652328786559
Q gi|254780227|r  190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFN  269 (426)
Q Consensus       190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~  269 (426)
                      |+||+++++++|++++.||. +|+|+||||+|||+|||||++++||++|                    |++|+||.||+
T Consensus       139 f~TA~~~~~~~i~~l~~ta~-s~~rv~ivEvMGR~~G~LAl~~~la~ga--------------------d~iliPE~~~~  197 (279)
T pfam00365       139 FDTALNTIVEAIDRIRDTAS-SHQRTFVVEVMGRHCGDLALVAGIAGGA--------------------DYIFIPEAPFW  197 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCHHHHHHHHHHHCCC--------------------CEEEECCCCCC
T ss_conf             89999999999999999864-2686499997997868999999885289--------------------99996798875


Q ss_pred             HHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             89999999998502-89538995042111111012320112222234445443556648999999998718743188418
Q gi|254780227|r  270 LEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKS  348 (426)
Q Consensus       270 ~~~~~~~i~~~~~~-~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~~~l  348 (426)
                      ++++++.+++.+++ +++++||||||+..                           ..+..+.+++.+..+.+ +|++.|
T Consensus       198 ~~~~~~~i~~~~~~~k~~~ivvvsEG~~~---------------------------~~~~~~~~~i~~~~~~~-~r~~~l  249 (279)
T pfam00365       198 EEELCNRLKRGRERGKRHNIVIVAEGAID---------------------------PITSEFVKKLVVEGGYD-TRVTVL  249 (279)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCCCC---------------------------CCHHHHHHHHHHHCCCC-CEECCC
T ss_conf             89999999999980898059999789877---------------------------64199999999866997-444577


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             861235589867999999999999999977
Q gi|254780227|r  349 GYFARSAPSGSEDLSLIKKMVVLAVDSAIS  378 (426)
Q Consensus       349 Gy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~  378 (426)
                      ||+||||+||++||++|++||..||+++++
T Consensus       250 Gh~QRGG~Ps~~Dr~la~~lG~~Av~~l~e  279 (279)
T pfam00365       250 GHVQRGGTPTAFDRILASRMGAEAVEALLE  279 (279)
T ss_pred             CHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             810059999899999999999999999729


No 14 
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00  E-value=0  Score=585.76  Aligned_cols=350  Identities=17%  Similarity=0.191  Sum_probs=279.9

Q ss_pred             HHHHHHHHHHHHCCHHH-CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCC
Q ss_conf             88868999987332121-03487633799983687751489999999999998569978999838366010799130462
Q gi|254780227|r    6 SYISNLDMWILTGVLSF-LEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITE   84 (426)
Q Consensus         6 ~~~~~~~~~~~~g~~~~-~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~   84 (426)
                      +|..+++.|..+-.... .....+.+|||||||||||||||++||++|+++  ++.|++|||+++||+||++++   +.+
T Consensus       365 ~F~~~~~~~~~~~~~~~~~~~~~~~~rIaIlt~GgdapGMNAAiRA~Vr~~--~~~G~~v~gI~~Gf~GL~~g~---i~~  439 (762)
T cd00764         365 SFDKNWNLYKLLAIELPQPLPEKTNLNIAIVNVGAPAAGMNAAVRSAVRYG--LAHGHRPYAIYDGFEGLAKGQ---IVE  439 (762)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEECCHHHHHCCC---EEE
T ss_conf             789999999986034777788667706999856889614779999999999--988999999925843674798---677


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf             69888874640787400336788865301110123456745699999999863998899948825789999999999851
Q gi|254780227|r   85 DMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEK  164 (426)
Q Consensus        85 l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~  164 (426)
                      ++|.+|.+|.+.|||+|||+|+.++               ++++.+.++|++++||+|++||||+|++++..|++.....
T Consensus       440 l~~~~V~g~~~~GGt~LgT~R~~p~---------------~~~~~~a~~l~~~~Id~LivIGG~gs~~ga~~L~~~r~~y  504 (762)
T cd00764         440 LGWIDVGGWTGRGGSELGTKRTLPK---------------KDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQY  504 (762)
T ss_pred             CCHHHHCCHHHCCCEEECCCCCCCC---------------CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf             7845638866468803265788973---------------4499999999981998899966807999999999756424


Q ss_pred             -CCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCH
Q ss_conf             -8996288522223477222114633565999999999999987751666169999769874289999874014332310
Q gi|254780227|r  165 -NYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDR  243 (426)
Q Consensus       165 -~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i  243 (426)
                       .++||+|+||+|||||+|+||+|||||||+|+++++||.|+++|.|+|+|+||||||||+|||||+++|||+||     
T Consensus       505 ~~~~IP~v~IPaTIdNdv~GTd~siG~DTAlN~i~~aiD~Ir~sA~ssh~RvfVVEvMGr~~GylAl~sglA~GA-----  579 (762)
T cd00764         505 EEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAVGA-----  579 (762)
T ss_pred             CCCCCCEEEEECCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCC-----
T ss_conf             345886797312130799786040158869999999998776414224775899994786622999987786367-----


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH---HHC-CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf             1111111000145765232878655989999999998---502-895389950421111110123201122222344454
Q gi|254780227|r  244 NYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKV---MEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHI  319 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~---~~~-~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~  319 (426)
                                     +.+||||.+|+++.+.+.++..   ++. ++...++..|....                      
T Consensus       580 ---------------~~i~iPEe~~~l~~l~~di~~l~~~~~~~~~~g~~~~~~~~~e----------------------  622 (762)
T cd00764         580 ---------------DAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLRNEKCNE----------------------  622 (762)
T ss_pred             ---------------CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC----------------------
T ss_conf             ---------------2899558888989999999999998754221473588998536----------------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---------------CCCCEE
Q ss_conf             43556648999999998718743188418861235589867999999999999999977---------------998669
Q gi|254780227|r  320 LLDKMNVGSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAIS---------------GISGVT  384 (426)
Q Consensus       320 ~l~~~~i~~~La~~i~~~~~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~---------------G~sgvm  384 (426)
                      ..+...+.++++++.+..+   ..|+++|||+||||.||+|||++|++||.+||+++.+               -.|.++
T Consensus       623 ~~~~~~~~~l~~ee~k~~f---d~R~tVLGHvQrGGsPSp~DRilAtR~g~kAVe~ie~~~~~~~~~~~~~~~~~~~~~~  699 (762)
T cd00764         623 NYTTVFTYELYSEEGKGVF---DCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAMKWIEQKLKENYAAGNEFANDPDFNCV  699 (762)
T ss_pred             CCHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf             6227889999999733876---5301324703589999878889999999999999999876422356510268982489


Q ss_pred             EEEECCCEEEEEEEHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             999859869964308985268820777589999998
Q gi|254780227|r  385 GEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILR  420 (426)
Q Consensus       385 v~i~~~~~~~~~i~~~~i~~~k~vd~~~~~~~~~l~  420 (426)
                      .+++.....+.|+....-..-+..-|..+||..+.+
T Consensus       700 ~g~~~~~~~f~p~~~~~~td~~~r~pk~~wW~~lr~  735 (762)
T cd00764         700 NGVKKYAVLFEPVEELKQTTFEHRIPKEQWWLSLRP  735 (762)
T ss_pred             EEEECCEEEECCHHHHHHCCHHHCCCHHHHHHHHHH
T ss_conf             976143688660687644444106868789884789


No 15 
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00  E-value=0  Score=543.39  Aligned_cols=376  Identities=22%  Similarity=0.264  Sum_probs=304.6

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCCCCCC
Q ss_conf             3379998368775148999999999999856997899983836601079913046269888874640787-400336788
Q gi|254780227|r   29 AHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGNSRVK  107 (426)
Q Consensus        29 ~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~LgtsR~~  107 (426)
                      ..||||+.|||+|||.||||+|++++++..+++.++|||.+|+.||++++++++++   +.++.+.++|| ++|||+|.+
T Consensus        72 plriGvvlsGgqAPGghNVI~Gl~d~lk~~n~~s~l~GF~~G~~Gl~~~~~~elt~---~~i~~~rN~GGFd~lgs~r~k  148 (557)
T PRK07085         72 PLKVGVILSGGQAPGGHNVIAGLFDGLKKFNPDSKLFGFIGGPLGLLNNKYIELTE---EVIDEYRNTGGFDMIGSGRTK  148 (557)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCEEEECH---HHHHHHHCCCCCCEECCCCCC
T ss_conf             81799996279998378889999999997689977999877704440697799489---999987628885243068654


Q ss_pred             CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--CCC
Q ss_conf             865301110123456745699999999863998899948825789999999999851899628852222347722--211
Q gi|254780227|r  108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII--PIH  185 (426)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~--~td  185 (426)
                      +.             ++++++++.++++++++|+||+||||||++.|+.|+||+.+++.+++||||||||||||.  .+|
T Consensus       149 i~-------------t~e~~~~~~~t~~~l~LdgLviiGGd~sntnAa~LAEyf~~~~~~t~VIGvPkTidgDLkn~~ie  215 (557)
T PRK07085        149 IE-------------TEEQKEACLQTVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHNCKTQVIGVPKTIDGDLKNEFIE  215 (557)
T ss_pred             CC-------------CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             58-------------99999999999998599879997988721638999999998299837993352147877766404


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHH-----------------
Q ss_conf             463356599999999999998775166616999976987428999987401433231011111-----------------
Q gi|254780227|r  186 QSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDG-----------------  248 (426)
Q Consensus       186 ~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~-----------------  248 (426)
                      .|||||||++++++.|.|++.||.|+.++||||++|||+++|+||+|||+|+|++++|.|+..                 
T Consensus       216 ~sfGFdTa~k~yselIGNl~~Da~Sa~KYwHFVrlMGRsASHiaLECaLQThPNi~lI~EEv~~k~~TL~~Iv~~I~d~I  295 (557)
T PRK07085        216 TSFGFDTATKTYSEMIGNISRDALSAKKYWHFIKLMGRSASHIALECALQTHPNICLISEEIAEKNISLDDIVHYIASVI  295 (557)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             55362236889999999999875015760799998168610788888751388789767999871796999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----CCCCE--EEEEECCCC---CCC---------CHHHHHHCCCC
Q ss_conf             1100014576523287865598999999999850----28953--899504211---111---------10123201122
Q gi|254780227|r  249 FIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVME----KKGSV--AIFVSEGAC---RDV---------IMDNRLSSGEK  310 (426)
Q Consensus       249 ~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~----~~~~~--vIVvsEG~~---~~~---------~~~~~~~~~~~  310 (426)
                      ..+...++...+|||||..++..+.++.+.+.++    .....  -+-..+...   ...         ..+......-.
T Consensus       296 ~~Ra~~GknyGviLIPEGLiefIPe~k~LI~ELn~ll~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~lf~sLP~~I~~qLl  375 (557)
T PRK07085        296 ADRAAKGKNFGVILIPEGLIEFIPEMKSLIKELNSLLAENDSEFKGLDTEAQREYIISKLSPESQKLFSSLPEDIARQLL  375 (557)
T ss_pred             HHHHHCCCCCEEEEECCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHH
T ss_conf             99997599865999462387627789999999999997344321123411457899884699999999966499999986


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC----------CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             2223444544355664899999999871874----------318841886123558986799999999999999997799
Q gi|254780227|r  311 IKRDSFGHILLDKMNVGSWFADKFANMIKAE----------RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGI  380 (426)
Q Consensus       311 ~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~----------~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~  380 (426)
                      .+||+|||++++.++++++|++++++++..+          ...+|.+||+.||+.||.||+.|||.||+.|..++.+|.
T Consensus       376 ldrD~hGnvqvs~IeTEkLL~~lV~~eL~~~k~~g~y~g~F~~~~HffGYEgRca~PSnFD~~Y~YaLG~~A~~Li~~g~  455 (557)
T PRK07085        376 LDRDPHGNVQVSKIETEKLLIELVSKELEKLKPEGEYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAGLLVLNGK  455 (557)
T ss_pred             HCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             34288898656423199999999999999998658647514046421003646779871046989988899999996699


Q ss_pred             CCEEEEEECC-----CEEEEEEEHHHHCC-------------CCCCCCCHHHHHHHHH
Q ss_conf             8669999859-----86996430898526-------------8820777589999998
Q gi|254780227|r  381 SGVTGEDERE-----NNILRIIKFEDIRG-------------GRVFDTNTPWFSDILR  420 (426)
Q Consensus       381 sgvmv~i~~~-----~~~~~~i~~~~i~~-------------~k~vd~~~~~~~~~l~  420 (426)
                      ||+|+++++-     .+....+|+..+.+             +-.||.++..|+.+..
T Consensus       456 tGYma~I~nL~~~~~~W~~~giPlt~mM~ve~r~G~~~pvIkk~lVdL~g~~fk~~~~  513 (557)
T PRK07085        456 TGYMSTIKNLASPYTEWIAGAVPLTMMMNMERRKGKEKPVIKKALVDLDGPPFKKFAK  513 (557)
T ss_pred             CEEEEEECCCCCCHHHEEECCCHHHHHCCHHHHCCCCCCCCCCCEECCCCHHHHHHHH
T ss_conf             4599984377788778688710177650847547961432114416889889999999


No 16 
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00  E-value=0  Score=540.59  Aligned_cols=377  Identities=18%  Similarity=0.196  Sum_probs=308.4

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCCCCC
Q ss_conf             63379998368775148999999999999856997899983836601079913046269888874640787-40033678
Q gi|254780227|r   28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGNSRV  106 (426)
Q Consensus        28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~LgtsR~  106 (426)
                      .+.||||+.|||||||.||||+|+.++++..+++.++|||.+|..||++++++++++   +.++.+.++|| ++|||+|.
T Consensus        71 ~~l~vGvvlsGgqAPGGHNVI~Gl~d~lk~~n~~s~l~GF~~Gp~Gl~~~~~~eit~---~~i~~yrN~GGfdmi~sgr~  147 (550)
T cd00765          71 PKLKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNA---EYIQPYRNTGGFDMICSGRT  147 (550)
T ss_pred             CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEEEECH---HHHHHHHCCCCCCCCCCCCC
T ss_conf             871899998579999515749879999996498877999757842320696798089---99987651888510368856


Q ss_pred             CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCC
Q ss_conf             886530111012345674569999999986399889994882578999999999985189962885222234772--221
Q gi|254780227|r  107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI--IPI  184 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi--~~t  184 (426)
                      ++.             ++++++++.++++++++|+||+||||+|++.|+.|+||+.+++.+++||||||||||||  +.+
T Consensus       148 ki~-------------t~eq~~~~~~~~~~l~LdgLVIiGGddSnTnaa~LAEyf~~~~~~t~VIGvPkTIdgDLkn~~I  214 (550)
T cd00765         148 KIE-------------TEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEI  214 (550)
T ss_pred             CCC-------------CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCC
T ss_conf             248-------------9999999999999859987999689873487999999999649995599345364488778862


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHH----------------
Q ss_conf             1463356599999999999998775166616999976987428999987401433231011111----------------
Q gi|254780227|r  185 HQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDG----------------  248 (426)
Q Consensus       185 d~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~----------------  248 (426)
                      |.|||||||++++++.|.|+++||.|+.++||||++|||+++|+||+|||+|+|++|+|.|+..                
T Consensus       215 E~sfGFDTa~k~yselIgNl~~Da~Sa~KYwHFIklMGRsaSHiaLEcaLQThPNi~lI~EEv~~k~~TL~~Iv~~I~d~  294 (550)
T cd00765         215 ETSFGFDTATKIYSELIGNVMRDARSTGKYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDV  294 (550)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHHCCCCHHHHHHHHHHH
T ss_conf             55425045788999999999976500476079999816861078887766228989986799886479699999999999


Q ss_pred             -HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----CCC--CEEEEEECCCCCCCCH--------------HHHHHC
Q ss_conf             -1100014576523287865598999999999850----289--5389950421111110--------------123201
Q gi|254780227|r  249 -FIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVME----KKG--SVAIFVSEGACRDVIM--------------DNRLSS  307 (426)
Q Consensus       249 -~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~----~~~--~~vIVvsEG~~~~~~~--------------~~~~~~  307 (426)
                       ..+...++...+|||||..++..+.++.+.+.++    .+.  ...+.. +.....+..              +.....
T Consensus       295 I~~Ra~~GknyGviLIPEGLiefIPe~k~Li~Eln~~l~~~~~~~~~l~~-~~~~~~~i~~~ls~~~~~lf~~LP~~i~~  373 (550)
T cd00765         295 ICKRAELGYNFGVVLVPEGLIEFIPEVKELIAELNEILANEVVEFNGLWK-KKLTEQSLKLFDLLPKGVYLPLFIEAIQE  373 (550)
T ss_pred             HHHHHHCCCCCEEEEECCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHCCHHHHHHHHHCCHHHHH
T ss_conf             99999759986499956058876888999999999998615442113453-10028999860888799999856799999


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC----------EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             12222234445443556648999999998718743----------18841886123558986799999999999999997
Q gi|254780227|r  308 GEKIKRDSFGHILLDKMNVGSWFADKFANMIKAER----------SIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAI  377 (426)
Q Consensus       308 ~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~----------~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~  377 (426)
                      .-..+||+|||++++.++++++|++++++++..++          ..+|.+||+.||+.||.||+.|||.||+.|..++.
T Consensus       374 qLlldrD~hGnvqvs~IeTEkLL~~lV~~eL~~~k~~g~y~g~F~~~~HffGYEgRca~PSnFD~~Y~YaLG~~A~~li~  453 (550)
T cd00765         374 QLMLERDPHGNVQVSRIETEKLLIQMVETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLN  453 (550)
T ss_pred             HHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             87433377788657530599999999999999998629604644314200345513779973156989988899999997


Q ss_pred             CCCCCEEEEEECC-----CEEEEEEEHHHHCC-------------CCCCCCCHHHHHHHHHH
Q ss_conf             7998669999859-----86996430898526-------------88207775899999984
Q gi|254780227|r  378 SGISGVTGEDERE-----NNILRIIKFEDIRG-------------GRVFDTNTPWFSDILRH  421 (426)
Q Consensus       378 ~G~sgvmv~i~~~-----~~~~~~i~~~~i~~-------------~k~vd~~~~~~~~~l~~  421 (426)
                      +|.||+|+++++-     ++....+|+..+.+             +..||.++..|+.+...
T Consensus       454 ~g~tGYmasI~nL~~~~~~W~~~giPlt~mM~~e~r~g~~~pvI~k~~VdL~g~~fk~~~~~  515 (550)
T cd00765         454 SGKTGYISSVGNLAAPVEEWTVGGVPLTMLMNMERRHGKFKPVIKKALVDLEGAPFKKFASL  515 (550)
T ss_pred             CCCCEEEEEECCCCCCHHHEEECCEEHHHHCCHHHHCCCCCCCCCCCEECCCCHHHHHHHHH
T ss_conf             79941799834766886675786300776503375369767641264237796899999999


No 17 
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161    Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).   Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis.   For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=536.92  Aligned_cols=356  Identities=19%  Similarity=0.222  Sum_probs=293.8

Q ss_pred             HHHHHHHHHHHHHHHCCHHHCCC-CCCEE--EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-
Q ss_conf             68888868999987332121034-87633--799983687751489999999999998569978999838366010799-
Q gi|254780227|r    3 EFLSYISNLDMWILTGVLSFLEK-DMVAH--KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDD-   78 (426)
Q Consensus         3 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~k--rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~-   78 (426)
                      +|.+++..|..-=..-.-+.+.+ +.+-+  ||||++.|.||+|||+|+|++|+++  +++|++||||+|||.||++++ 
T Consensus       373 eF~~~~~~~~~~s~~~~~~~~~~~~~~r~~~R~AIihvGAPA~GMNaA~R~avr~~--~~~Gh~v~aI~nGf~GL~~~~D  450 (777)
T TIGR02478       373 EFVENLATFLELSKPDQDKKLVPSKADRLNLRVAIIHVGAPAGGMNAATRAAVRYA--LARGHTVIAIHNGFSGLARGDD  450 (777)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEEECCCHHCCCCCC
T ss_conf             35775444776203378886777543567420799964888530239999999998--5069879998168410022888


Q ss_pred             ---CEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             ---13046269888874640787400336788865301110123456745699999999863998899948825789999
Q gi|254780227|r   79 ---KITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTAC  155 (426)
Q Consensus        79 ---~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~  155 (426)
                         ...+++|.|.+|++|.+.|||+|||-|.-|              ++.++..++..|++++||+|+||||+.++.++.
T Consensus       451 DtPicsvrEL~W~dV~gW~~~GGS~lGTnR~lP--------------~~~d~~~iA~~f~~~kiDgL~IIGGFEAf~al~  516 (777)
T TIGR02478       451 DTPICSVRELTWSDVEGWVGEGGSELGTNRELP--------------NGKDLGEIAYKFQKHKIDGLLIIGGFEAFEALL  516 (777)
T ss_pred             CCCEEEEEEECCCCCHHHHCCCCCCCCCCCCCC--------------CCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf             974331222023444233428876216778977--------------865389999999860988799976036889999


Q ss_pred             HHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf             99999985-18996288522223477222114633565999999999999987751666169999769874289999874
Q gi|254780227|r  156 DLLRYLKE-KNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAH  234 (426)
Q Consensus       156 ~L~e~~~~-~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~al  234 (426)
                      +|.+...+ ..+.||++.||.||+|++||||||+|-|||+|.+++.+|+|++.|.+|.+|+|||||||++|||||.++||
T Consensus       517 qL~~aR~~YP~F~IPmv~iPATISNNVPGTe~SLG~DTaLN~i~~~cD~IkqSA~askrRvFVvEtmGG~sGYLAt~~GL  596 (777)
T TIGR02478       517 QLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDKIKQSASASKRRVFVVETMGGYSGYLATMAGL  596 (777)
T ss_pred             HHHHHHHHCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf             99999861885578857866601077872443022015777899872632235301147569999708971689999988


Q ss_pred             HCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH---HHHHHHHC-----CCCEEEEEECCCCCCCCHHHHHH
Q ss_conf             01433231011111110001457652328786559899999---99998502-----89538995042111111012320
Q gi|254780227|r  235 CYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIE---RLSKVMEK-----KGSVAIFVSEGACRDVIMDNRLS  306 (426)
Q Consensus       235 a~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~---~i~~~~~~-----~~~~vIVvsEG~~~~~~~~~~~~  306 (426)
                      |+||                    +.+||||.+|+++.|-+   .+++.++.     +..-+|+-+|.++..        
T Consensus       597 a~GA--------------------~a~Yi~Eegi~l~~L~~Di~~L~~~fa~~~g~n~~~~L~lRNE~AS~~--------  648 (777)
T TIGR02478       597 ATGA--------------------DAAYIPEEGISLKDLQEDIEHLKEKFAEGAGKNRAGKLILRNENASKN--------  648 (777)
T ss_pred             HHCC--------------------EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC--------
T ss_conf             6462--------------------478864789788999999999998630047863014316640223312--------


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-------
Q ss_conf             11222223444544355664899999999871-8743188418861235589867999999999999999977-------
Q gi|254780227|r  307 SGEKIKRDSFGHILLDKMNVGSWFADKFANMI-KAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAIS-------  378 (426)
Q Consensus       307 ~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~-~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~-------  378 (426)
                                        ...+.+++.+.|+. +....|..+|||+|.||.||||||.+|++||..|++++.+       
T Consensus       649 ------------------ytTd~i~~ii~EE~kG~F~~R~~vlGH~QQGG~PSPfDR~~a~rlA~rA~~~i~~~~~~~~~  710 (777)
T TIGR02478       649 ------------------YTTDFIARIISEEAKGRFDARTAVLGHMQQGGSPSPFDRVRATRLAIRAVDFIEEKIKANKS  710 (777)
T ss_pred             ------------------CCHHHHHHHHHHHHCCCCCCCEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             ------------------27589999999982694401200277020598888667888999999999999998640765


Q ss_pred             ------CC------CCEEEEEECCCEEEEEEE--H-HHHCCCCCCCCCHHHHHHHHH
Q ss_conf             ------99------866999985986996430--8-985268820777589999998
Q gi|254780227|r  379 ------GI------SGVTGEDERENNILRIIK--F-EDIRGGRVFDTNTPWFSDILR  420 (426)
Q Consensus       379 ------G~------sgvmv~i~~~~~~~~~i~--~-~~i~~~k~vd~~~~~~~~~l~  420 (426)
                            -+      |-++.+++..++.+.|+.  . ..-...+..-|..+||.++-.
T Consensus       711 ~~~~~~~~~~~~~~s~~viGi~gS~~~F~pv~G~~~~~eT~~~~R~PK~~wWl~Lr~  767 (777)
T TIGR02478       711 ADKLAADDTKELTDSAVVIGIRGSNVLFTPVKGQLLAKETDFEHRRPKEQWWLDLRP  767 (777)
T ss_pred             HHHCCCCCCHHHHCEEEEEEEECCCCEEECCCCCHHHHCCCHHHCCCHHHHHHHHHH
T ss_conf             111123434011050689868737214613466503231023206880787976637


No 18 
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00  E-value=0  Score=542.55  Aligned_cols=379  Identities=20%  Similarity=0.188  Sum_probs=311.5

Q ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCC
Q ss_conf             48763379998368775148999999999999856997899983836601079913046269888874640787-40033
Q gi|254780227|r   25 KDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGN  103 (426)
Q Consensus        25 ~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~Lgt  103 (426)
                      +-.-+-||||+.|||+|||.||||+|++++++..++..++|||.+|..||++++++++++   +.++.++++|| ++|||
T Consensus       175 ~~~~~LrVGVvLSGGqAPGGHNVI~GlfD~lK~~Np~S~L~GFlgGp~Gl~~~~y~EiT~---e~i~~YRN~GGFDmIgS  251 (1439)
T PTZ00287        175 KGGNILKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITD---SLMNRFRNLGGFNMLWS  251 (1439)
T ss_pred             CCCCEEEEEEEEECCCCCCCCEEEHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEEEECH---HHHHHHHCCCCCCEECC
T ss_conf             888358999996479999864031526899986498787987567843322686599359---99986333888533215


Q ss_pred             CCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-
Q ss_conf             6788865301110123456745699999999863998899948825789999999999851899628852222347722-
Q gi|254780227|r  104 SRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII-  182 (426)
Q Consensus       104 sR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~-  182 (426)
                      +|.|+-             .+++++++.++++++++|+||+||||||++.|+.||||+++++++++|||||||||+||. 
T Consensus       252 GR~KIe-------------t~EQ~~~a~~t~~~L~LdgLVIIGGDdSNTNAA~LAEYf~~~~~~t~VIGvPKTIDGDLKn  318 (1439)
T PTZ00287        252 GRGKVK-------------NKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALIAEYFAERNIPISIIGIPKTIDGDLKS  318 (1439)
T ss_pred             CCCCCC-------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf             853237-------------9999999999999728987999848997488999999999669995798157441575557


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHH-------------
Q ss_conf             -211463356599999999999998775166616999976987428999987401433231011111-------------
Q gi|254780227|r  183 -PIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDG-------------  248 (426)
Q Consensus       183 -~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~-------------  248 (426)
                       .+|.|||||||+++++|.|.|++.||.|+.++||||++|||+|+|+||+|||+|+|++++|.|+.+             
T Consensus       319 ~~IEtSFGFDTA~K~YSElIGNI~~Da~Sa~KYyHFIkLMGRSASHIALECALQThPNi~lIgEEV~~kk~TL~~Iv~~I  398 (1439)
T PTZ00287        319 EAIEISFGFDTATKTYSEIIGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQTRPNIVLIGEEVEKEKLSLKDIVKNI  398 (1439)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCHHHHHHHH
T ss_conf             80511456331389999999899988631365259998226326789999875038757987398886379899999999


Q ss_pred             ----HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC----CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf             ----11000145765232878655989999999998502----8953899504211111101232011222223444544
Q gi|254780227|r  249 ----FIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK----KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHIL  320 (426)
Q Consensus       249 ----~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~~----~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~  320 (426)
                          ..+...++...+|||||..+++.+.++.+...++.    .....--+.|....-...+.....+-..+||+||+++
T Consensus       399 ~d~I~~Ra~~GknyGViLIPEGLIEFIPE~k~LI~ELN~lL~~~~~~~~~l~~s~~~~~~LP~~Iq~QLLldRDpHGNvq  478 (1439)
T PTZ00287        399 VNIILKRKSLNKNYGVILIPEGLIEFVPEIKILIGELNVILKDGPFDADKLKHSKEVWDFLPPIIRDQLLMDRESTGYIQ  478 (1439)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEE
T ss_conf             99999999749974189913506551188999999999998467643456688999998677999999852538888885


Q ss_pred             CCCCCHHHHHHHHHHHHHCCC-------CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC---
Q ss_conf             355664899999999871874-------3188418861235589867999999999999999977998669999859---
Q gi|254780227|r  321 LDKMNVGSWFADKFANMIKAE-------RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERE---  390 (426)
Q Consensus       321 l~~~~i~~~La~~i~~~~~~~-------~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~---  390 (426)
                      ++.+.++++|++++++++..+       ....|++||+.||+.||.||+.|||.||+.|..++.+|+||+|.++++-   
T Consensus       479 VS~IeTEkLL~~lV~~eL~k~~~~~~~f~~~~HFfGYEGRca~PSNFD~~YcYaLG~~A~~Li~~g~tGYMa~V~NL~~~  558 (1439)
T PTZ00287        479 VGKIATERLIIVLVESELAKLNDKNLNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDS  558 (1439)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCCC
T ss_conf             22213999999999999999751587740332003346656899867458888877899999964886057343012678


Q ss_pred             --CEEEEEEEHHHHCC--------------CCCCCCCHHHHHHHH
Q ss_conf             --86996430898526--------------882077758999999
Q gi|254780227|r  391 --NNILRIIKFEDIRG--------------GRVFDTNTPWFSDIL  419 (426)
Q Consensus       391 --~~~~~~i~~~~i~~--------------~k~vd~~~~~~~~~l  419 (426)
                        .+...-+|+..+.+              +-.||.+++.|+.+-
T Consensus       559 ~~eW~~~GiPlt~mM~v~~~~~Gk~~PvIkK~LVdL~G~~Fk~f~  603 (1439)
T PTZ00287        559 YANWIPAAIPFLRIMHVIKDNTGKEFPAVKRYLVDLNSPLFNVLK  603 (1439)
T ss_pred             HHHCEECCCCHHHHHCHHHHCCCCCCCEEEEEHHCCCCHHHHHHH
T ss_conf             877566644068763332313798665342201036777789999


No 19 
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00  E-value=0  Score=434.89  Aligned_cols=357  Identities=19%  Similarity=0.168  Sum_probs=283.7

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCCCCCCC
Q ss_conf             379998368775148999999999999856997899983836601079913046269888874640787-4003367888
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGNSRVKL  108 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~LgtsR~~~  108 (426)
                      -||||+.+|.++||.++||||+++++..+  +..++||+ |..||+.+.++++++   ++++.+.++|| .++|.+..+.
T Consensus       855 lRIGiv~~grQsPG~~NViwGL~~~l~~~--~~~~i~F~-G~~Gl~~~k~lei~~---~~l~~~~NQGG~el~grt~~~~  928 (1439)
T PTZ00287        855 IKIGIVFLSRQAPGAMNVLCGLYHRLKLL--KGVCIAFY-GLYGLLHNKYIIIDD---DNIAKHLNQGGLELTGNSPEHS  928 (1439)
T ss_pred             EEEEEEEECCCCCCCCHHHHHHHHHHHHH--CCEEEEEE-CHHHHHCCCEEEEEH---HHHHHHHCCCCEEEECCCHHHH
T ss_conf             49989984578987312167689999860--57489985-335552485699705---7767643276704423645644


Q ss_pred             CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCC
Q ss_conf             6530111012345674569999999986399889994882578999999999985189962885222234772--22114
Q gi|254780227|r  109 TNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI--IPIHQ  186 (426)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi--~~td~  186 (426)
                      .            ...++++++.+++.++++|+||+|||++|++.|+.|+|||.++++.++|||||+|+||||  +.+|.
T Consensus       929 l------------~~~e~~~~~~~Tc~~L~LDGLViiGg~~s~T~AA~LaEyFl~~~~kT~VIGVP~TidndLk~~~IEt  996 (1439)
T PTZ00287        929 L------------FDKENRNKVCETVTKLQLNGLVMPGSNITITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIET  996 (1439)
T ss_pred             H------------CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEEE
T ss_conf             0------------5888899999999864886289957874213789999999973997159964332478767762101


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHH-----------------HH
Q ss_conf             6335659999999999999877516661699997698742899998740143323101111-----------------11
Q gi|254780227|r  187 SLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYID-----------------GF  249 (426)
Q Consensus       187 tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~-----------------~~  249 (426)
                      |+|||||++.+++.|.|+++||.|++++|+||++|||.++|++|+|||+|+|++++|.|+.                 ..
T Consensus       997 cvGFDT~tKvyasLIGNvltDA~Sa~KYwhFIRLMGR~aSHivLECALQTHPNvViI~EEv~~~k~TL~~Iv~~IaD~Vc 1076 (1439)
T PTZ00287        997 CVGFDSSTKVYASLIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVC 1076 (1439)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             10542278899999988887641266227986200465047788775514896898638855431659999999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-------CCCE--------EEEEECCC-----------------C-
Q ss_conf             1000145765232878655989999999998502-------8953--------89950421-----------------1-
Q gi|254780227|r  250 IFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK-------KGSV--------AIFVSEGA-----------------C-  296 (426)
Q Consensus       250 ~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~~-------~~~~--------vIVvsEG~-----------------~-  296 (426)
                      .+...+++..+|||||..++..+.++.+-+.++.       ++..        .+-...+.                 . 
T Consensus      1077 kRAe~gKnyGvVLIPEgLI~~IPe~k~Li~Eln~~L~~a~e~~~~~~a~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~ 1156 (1439)
T PTZ00287       1077 ARADLGKNYGTVLIPDALLMHLPHMKILLSEISDILNDANEKGQLLEARNDLVNLSTTQGAAAGTAGTAGTVAGADHGHL 1156 (1439)
T ss_pred             HHHHCCCCCCEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88750876737980368987677899999999999975202001445444321432123554332212333442101222


Q ss_pred             -CC-------CCHHHHHHCCC----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC----------EEEECCCCCCCC
Q ss_conf             -11-------11012320112----222234445443556648999999998718743----------188418861235
Q gi|254780227|r  297 -RD-------VIMDNRLSSGE----KIKRDSFGHILLDKMNVGSWFADKFANMIKAER----------SIVQKSGYFARS  354 (426)
Q Consensus       297 -~~-------~~~~~~~~~~~----~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~----------~~~~~lGy~qRg  354 (426)
                       .+       |....+.+..+    ........+.+++.++++++|++++++++..++          ..++.+||+.||
T Consensus      1157 ~~~~~skLtPwS~ALF~slP~~I~~elL~~d~~~~q~s~IETE~LL~~lVe~EL~~RK~~G~YkG~F~~~~HFFGYQGR~ 1236 (1439)
T PTZ00287       1157 ASEWVLKLTPWSLALLKTFPQFIIKELLHVDLRSMRFEKLETEQLLLQMVKEELHDRKQKGKYSGSFMGLTHFFGYQGRS 1236 (1439)
T ss_pred             CCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCEECEEEEEEECCCCC
T ss_conf             10344317988999997513999999824882100255524999999999999999864473233231022011103436


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-----CEEEEEEEHHHHCC
Q ss_conf             589867999999999999999977998669999859-----86996430898526
Q gi|254780227|r  355 APSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERE-----NNILRIIKFEDIRG  404 (426)
Q Consensus       355 g~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~-----~~~~~~i~~~~i~~  404 (426)
                      +.||.||+.|||.+|+.|..++..|.||+|+.+.+-     .+.+..+|+..+..
T Consensus      1237 alPS~FDc~l~YalGh~A~ilvesGlTGym~sIr~L~~~v~dW~~~aiP~t~LM~ 1291 (1439)
T PTZ00287       1237 SLPSEFDCKLAYAYGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMK 1291 (1439)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCEECCCHHHHHHE
T ss_conf             6886456688888788999999659825774300235778880645330666540


No 20 
>KOG2440 consensus
Probab=100.00  E-value=0  Score=351.08  Aligned_cols=298  Identities=22%  Similarity=0.279  Sum_probs=243.4

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf             98368775148999999999999856997899983836601079913046269888874640787400336788865301
Q gi|254780227|r   34 FLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSD  113 (426)
Q Consensus        34 IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~  113 (426)
                      |+|||||+||||+++|++++.+  ++.+.++|+++.||+||+++.. .+.+..|..+++|.+.||+++||.|++.+...+
T Consensus         1 v~tsggd~~gmnaavr~~vr~~--i~~g~~~~~i~egy~gl~~g~~-~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~   77 (666)
T KOG2440           1 VLTSGGDSQGMNAAVRAVVRMG--IYRGCKVYLIYEGYEGLVRGGD-SIKEAQWLRVSYILSLGGTLIGTARCKAFRGRE   77 (666)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHC--CCCCCEEEEEECCCCCCCCCCC-CHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9277889888208899887732--2347548898517644346543-210036665178656898014511130224664


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH-----------------HCCCCCEEEEECCC
Q ss_conf             1101234567456999999998639988999488257899999999998-----------------51899628852222
Q gi|254780227|r  114 CIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLK-----------------EKNYNITVVGLPKT  176 (426)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~-----------------~~~~~i~vigiPKT  176 (426)
                      .+.            ++..++-+.+|+.|+++|||+|+++|+.+-.++.                 ..+.++.|+||+.+
T Consensus        78 gr~------------~aa~~~i~~~i~~l~~~ggdgsl~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgs  145 (666)
T KOG2440          78 GRL------------AAADNLIARGIPNLVVIGGDGSLTGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGS  145 (666)
T ss_pred             CEE------------CCCHHHHHHHCCEEEECCCCCCHHHHHHCCCCCCCCCHHHHHCCEEECCCCCCCCCCEEEEEECC
T ss_conf             311------------26266788526756752896521365528500132134777505341233465676589998622


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             34772221146335659999999999999877516661699997698742899998740143323101111111000145
Q gi|254780227|r  177 IDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFK  256 (426)
Q Consensus       177 IDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~  256 (426)
                      ||||++++|.++|-|||+..  ++||.+..||.||+ |-|++|+|||+|||+|+.+++|+++                  
T Consensus       146 idnd~~g~~~~iG~dsal~r--e~id~~~~ta~sh~-RgFv~evmgr~cg~lalv~~ia~~a------------------  204 (666)
T KOG2440         146 IDNDMYGTDMTIGIDSALHR--EAIDAITSTAQSHS-RGFVAEVMGRHCGYLALVAAIAGGA------------------  204 (666)
T ss_pred             CCCCCCCCCEEECCCCCHHH--HHHHHHHHHHCCCC-CEEEEEEHHHCCCHHHHHHHHHCCC------------------
T ss_conf             35653165202235620104--45655554312676-4577330333366299887765278------------------


Q ss_pred             CCCCCCCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             76523287865598-99999999985028953899504211111101232011222223444544355664899999999
Q gi|254780227|r  257 GIDGVYLPEMSFNL-EVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFA  335 (426)
Q Consensus       257 ~~d~iliPE~~~~~-~~~~~~i~~~~~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~  335 (426)
                        |.+++||.|..- +++++.+.. ...++...|+|+||.......+                      -+.+.+.+++.
T Consensus       205 --D~i~~pe~~~~~~~q~~~~l~~-~r~~Gln~viVigG~~~~~ga~----------------------i~ae~vk~~~~  259 (666)
T KOG2440         205 --DTIFIPERPGEDPEQLCEILDS-IRKRGLNIVIVIGGAIDNTGAP----------------------IIAEEVKERKL  259 (666)
T ss_pred             --CEEEECCCCCCCHHHHHHHHHH-HHHCCCCEEEEEECCCCCCCCC----------------------CCHHHHHHHHH
T ss_conf             --8798348899988999999999-9867987799972455788880----------------------46999998641


Q ss_pred             HHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEE
Q ss_conf             8718743188418861235589867999999999999999977998669999859869964
Q gi|254780227|r  336 NMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRI  396 (426)
Q Consensus       336 ~~~~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~  396 (426)
                      +.+.. .++++++||+||++.|++|||++|.++|+.||.+++.....   ++...+++-.|
T Consensus       260 k~lv~-g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s---~~~g~~~VRlm  316 (666)
T KOG2440         260 KVLVV-GVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAES---AENGNGIVRLM  316 (666)
T ss_pred             HEEEE-CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHH---HCCCCCEEEEH
T ss_conf             04220-66044327544478464420678999999999999862621---20554066601


No 21 
>KOG2440 consensus
Probab=100.00  E-value=3.7e-43  Score=297.94  Aligned_cols=387  Identities=16%  Similarity=0.083  Sum_probs=282.7

Q ss_pred             HHHCCHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEECCH----------------HHCCCCC
Q ss_conf             873321210348763379998368775148999999999999-85699789998383----------------6601079
Q gi|254780227|r   15 ILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYN-KILPKAELIYYRFG----------------YQGLLLD   77 (426)
Q Consensus        15 ~~~g~~~~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~-~~~~~~~v~G~~~G----------------~~GL~~~   77 (426)
                      -+++|+++..+.....|++|+|+||.|||+|.+|+++|-... .++.--+.+|..-+                ++|++.+
T Consensus       106 a~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv~e  185 (666)
T KOG2440         106 ARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFVAE  185 (666)
T ss_pred             HHHCCCCCCCCCHHHHHCCEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             55285001321347775053412334656765899986223565316520223562010445655554312676457733


Q ss_pred             CCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Q ss_conf             91304626988887464078740033678886530111012345674569999999986399889994882578999999
Q gi|254780227|r   78 DKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDL  157 (426)
Q Consensus        78 ~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L  157 (426)
                      ...+. ......+..++..++++++++|...              .++++..+++..++.++|.+|+|||+++.+++..+
T Consensus       186 vmgr~-cg~lalv~~ia~~aD~i~~pe~~~~--------------~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~  250 (666)
T KOG2440         186 VMGRH-CGYLALVAAIAGGADTIFIPERPGE--------------DPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPII  250 (666)
T ss_pred             EHHHC-CCHHHHHHHHHCCCCEEEECCCCCC--------------CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf             03333-6629988776527887983488999--------------88999999999986798779997245578888046


Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf             9999851899628852222347722211463356--59999999999999877516661699997698742899998740
Q gi|254780227|r  158 LRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGAL--TAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHC  235 (426)
Q Consensus       158 ~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfd--TA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala  235 (426)
                      +|+++++.....++++||||||||+-.+.+++||  ||++..+++|.+++.+|.++-+++.+|++|||.|+|+|+++++|
T Consensus       251 ae~vk~~~~k~lv~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla  330 (666)
T KOG2440         251 AEEVKERKLKVLVVGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLA  330 (666)
T ss_pred             HHHHHHHHHHEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCEEEEHHHHHHHHHHHHHHH
T ss_conf             99999864104220660443275444784644206789999999999998626212055406660138889999999985


Q ss_pred             CCCCCCCHHHHHHH----------------HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             14332310111111----------------10001457652328786559899999999985028953899504211111
Q gi|254780227|r  236 YLNMIQDRNYIDGF----------------IFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDV  299 (426)
Q Consensus       236 ~ga~~~~i~~~~~~----------------~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~~~~~~vIVvsEG~~~~~  299 (426)
                      ++...+..++..-.                .+.......+.. +|+.-..    .......++...+.+++++|+..++.
T Consensus       331 ~~~~d~~l~~elr~~~f~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~ii~----~g~~~~~lnaa~~~~v~~a~~~G~~~  405 (666)
T KOG2440         331 SRDKDFCLAPELRGRKFTLNLNTYKILDVVDPRAEQDPFYGE-IPGAIGL----FGAPAAGLNAAGHSVLRYAEGAGQDV  405 (666)
T ss_pred             CCCCCEEHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCE-ECCCEEE----ECHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             266313202454132666556666554102552236887741-2011366----52155688998888988655068613


Q ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC------EEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             1012320112222234445443556648999999998718743------1884188612355898679999999999999
Q gi|254780227|r  300 IMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAER------SIVQKSGYFARSAPSGSEDLSLIKKMVVLAV  373 (426)
Q Consensus       300 ~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~------~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av  373 (426)
                      ......+.+.  .+|..++..+.  +++.|+....++.+..+.      ...+.+.|+.|.-+....|-.++..++..++
T Consensus       406 ~~i~~~~~gl--~~d~~~~~~~~--dv~~w~~~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l  481 (666)
T KOG2440         406 IAISNGFEGL--AKDALGELIWK--DVGLWLSQGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSAL  481 (666)
T ss_pred             EEECCCHHHH--HHHHHHHHHHH--HHHHHHCCCCHHHEECCCCCCCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHH
T ss_conf             6631551133--44333244799--8641123685233131568420127776789997236510332315888889998


Q ss_pred             HHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             99977998669999859869964308985268820777589999998448898
Q gi|254780227|r  374 DSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILRHTGQKS  426 (426)
Q Consensus       374 ~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k~vd~~~~~~~~~l~~~gq~~  426 (426)
                      +..+++.+++.+.+.+....+.+.- ........+|+...+|.++++.|.||+
T Consensus       482 ~g~~~~yt~f~i~~v~ip~t~snnv-pgt~~s~gvdt~~N~~~~~~d~t~Q~a  533 (666)
T KOG2440         482 HGARAGYTGFDIPMVNIPATYSNNV-PGTEFSLGVDTALNAWARVCDSTKQSA  533 (666)
T ss_pred             HHHHCCCCCCCCCEEEEEEEECCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             6541389876533377630323776-032302550206767667763024776


No 22 
>pfam01513 NAD_kinase ATP-NAD kinase. Members of this family include ATP-NAD kinases EC:2.7.1.23, which catalyses the phosphorylation of NAD to NADP utilising ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus. Also includes NADH kinases EC:2.7.1.86.
Probab=96.16  E-value=0.025  Score=34.48  Aligned_cols=58  Identities=29%  Similarity=0.543  Sum_probs=40.3

Q ss_pred             HHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH--HHHHHHHHHHHH
Q ss_conf             9863998899948825789999999999851899628852222347722211463356599--999999999998
Q gi|254780227|r  134 LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA--QVSACFFDNISN  206 (426)
Q Consensus       134 l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~--~~~a~~i~~l~~  206 (426)
                      +.+.++|.++++|||||+-.+.+...     ..++|++||+.-          +.||-|..  +.+.++++++..
T Consensus        31 ~~~~~~Dlii~lGGDGT~L~~~~~~~-----~~~~PilGin~G----------~lGFL~~~~~~~~~~~l~~i~~   90 (243)
T pfam01513        31 MVEEGVDLIVVLGGDGTALDAARLLG-----DHDIPILGINTG----------TLGFLTEFSPEEAAKLLDALLE   90 (243)
T ss_pred             HHCCCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEECC----------CCCEECCCCHHHHHHHHHHHHC
T ss_conf             30559889999898789999999845-----679958998569----------7631003698899999999871


No 23 
>PRK02155 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.86  E-value=0.15  Score=29.47  Aligned_cols=125  Identities=15%  Similarity=0.152  Sum_probs=73.2

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r   27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV  106 (426)
Q Consensus        27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~  106 (426)
                      ..-|||||+.- -+.|..-...+.+...+..  .|.+|+--..-.                ... ++  .+..  ..+  
T Consensus         3 ~~fk~Vgiv~k-~~~~~~~~~~~~l~~~L~~--~g~~v~~e~~~a----------------~~~-~~--~~~~--~~~--   56 (291)
T PRK02155          3 SQFRTVALVGR-YQTPGIAEPLEALAACIAK--RGFEVVFEADTA----------------RNT-GL--TGYP--ALT--   56 (291)
T ss_pred             CCCCEEEEEEC-CCCHHHHHHHHHHHHHHHH--CCCEEEEEHHHH----------------HHC-CC--CCCC--CCC--
T ss_conf             87989999914-8986899999999999997--889999955577----------------763-99--8877--479--


Q ss_pred             CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             88653011101234567456999999998639988999488257899999999998518996288522223477222114
Q gi|254780227|r  107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ  186 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~  186 (426)
                                          .+.    + ..+.|-+|++|||||+-.+.+...     .+++||+||=.          =
T Consensus        57 --------------------~~~----~-~~~~Dlvi~lGGDGTlL~~a~~~~-----~~~~PilGiN~----------G   96 (291)
T PRK02155         57 --------------------PAE----I-GARADVAVVLGGDGTMLGIGRQLA-----PYGTPLIGINH----------G   96 (291)
T ss_pred             --------------------HHH----H-CCCCCEEEEECCCHHHHHHHHHHH-----CCCCCEEEEEC----------C
T ss_conf             --------------------799----4-637678999767889999999871-----15996899854----------7


Q ss_pred             CCCHHHHH--HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             63356599--99999999999877516661699
Q gi|254780227|r  187 SLGALTAA--QVSACFFDNISNERSATPRSLII  217 (426)
Q Consensus       187 tiGfdTA~--~~~a~~i~~l~~~A~s~~~~~~i  217 (426)
                      ++||-|.+  +.+.+.++++....-....|..+
T Consensus        97 ~lGFLt~~~~~~~~~~l~~i~~g~~~~~~R~~L  129 (291)
T PRK02155         97 RLGFITDIPLSDMQEALPPMLAGNYEEEERSLL  129 (291)
T ss_pred             CEEECCCCCHHHHHHHHHHHHCCCCEEEEECEE
T ss_conf             513406887788999999998599779550218


No 24 
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.63  E-value=0.032  Score=33.78  Aligned_cols=42  Identities=26%  Similarity=0.352  Sum_probs=31.1

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf             998899948825789999999999851899628852222347722211463356599
Q gi|254780227|r  138 GVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA  194 (426)
Q Consensus       138 ~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~  194 (426)
                      +-|.+++||||||+-.|.+...     ..++|++||=.          =++||-|..
T Consensus        33 ~~DlviviGGDGT~L~a~~~~~-----~~~iPilGIN~----------G~lGFLt~~   74 (259)
T PRK00561         33 GADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT----------GHLGFYTSF   74 (259)
T ss_pred             CCCEEEEECCHHHHHHHHHHHC-----CCCCCEEEEEC----------CCCEEEECC
T ss_conf             9999999897199999999855-----47996899966----------973364158


No 25 
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.70  E-value=0.088  Score=30.95  Aligned_cols=126  Identities=17%  Similarity=0.195  Sum_probs=68.3

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r   27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV  106 (426)
Q Consensus        27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~  106 (426)
                      |+.|||+|+.--+. |-.-.+.+.+.+.+..  +|.+|+-...+..-         .+           .++. +.    
T Consensus         1 m~lk~VlIV~k~~~-~~A~~~a~~l~~~L~~--rGi~v~~~~~~~~~---------~~-----------~~~~-~~----   52 (304)
T PRK02645          1 MQLKLVIIAYKAGS-PQAKEAAERCAKQLEA--RGIKVLMGPSGPKD---------NP-----------YPVF-LA----   52 (304)
T ss_pred             CCCCEEEEEECCCC-HHHHHHHHHHHHHHHH--CCCEEEECCCCCCC---------CC-----------CCCC-CC----
T ss_conf             97459999985899-9999999999999998--88999984443444---------77-----------7620-01----


Q ss_pred             CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             88653011101234567456999999998639988999488257899999999998518996288522223477222114
Q gi|254780227|r  107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ  186 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~  186 (426)
                                                 -.....|-++++|||||+-.+.+...     ..++||+||--      .   =
T Consensus        53 ---------------------------~~~~~~Dlvi~lGGDGT~L~aar~~~-----~~~iPilGiN~------~---G   91 (304)
T PRK02645         53 ---------------------------SAEELPDLAIVLGGDGTVLAAARHLA-----PHDIPILSFNV------G---G   91 (304)
T ss_pred             ---------------------------CCCCCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEEC------C---C
T ss_conf             ---------------------------44668889999786889999999854-----26998899824------8---6


Q ss_pred             CCCHHHH---HHHHHHHHHHHHHHHHHCCCCEEE-EEEC
Q ss_conf             6335659---999999999999877516661699-9976
Q gi|254780227|r  187 SLGALTA---AQVSACFFDNISNERSATPRSLII-HEVM  221 (426)
Q Consensus       187 tiGfdTA---~~~~a~~i~~l~~~A~s~~~~~~i-VEvM  221 (426)
                      ++||-|-   .....+.++++....-.-.+|..+ ++++
T Consensus        92 ~lGFLte~~~~~~~~~~l~~l~~g~~~ie~R~~L~~~v~  130 (304)
T PRK02645         92 HLGFLTHPRDLLQDESVWDRLLEDRYAIERRMMLQARVF  130 (304)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHCCCEEEEEEEEEEEEEE
T ss_conf             469716764221178999999769928998778999999


No 26 
>PRK13337 putative lipid kinase; Reviewed
Probab=94.56  E-value=0.14  Score=29.75  Aligned_cols=88  Identities=18%  Similarity=0.188  Sum_probs=54.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             74569999999986399889994882578999-99999998518996288522223477222114633565999999999
Q gi|254780227|r  123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTA-CDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFF  201 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a-~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i  201 (426)
                      .+.+...+++.....+.|.++++|||||..-+ +-|++    .....++--||.=--||+.   .++|.......+++  
T Consensus        43 ~~g~a~~~a~~~~~~~~d~vv~~GGDGTv~evvngl~~----~~~~~~lgiiP~GTgNdfa---r~lgi~~~~~~a~~--  113 (305)
T PRK13337         43 GPGDATLAARQAAERNFDLVIAAGGDGTLNEVVNGLAE----KENRPKLGIIPVGTTNDFA---RALGIPRDIEGAAD--  113 (305)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHC----CCCCCEEEEEECCCCHHHH---HHCCCCCCHHHHHH--
T ss_conf             80289999999877799989999576289999999855----8998628997078745789---98198989999998--


Q ss_pred             HHHHHHHHHCCCCEEEEEECCC
Q ss_conf             9999877516661699997698
Q gi|254780227|r  202 DNISNERSATPRSLIIHEVMGR  223 (426)
Q Consensus       202 ~~l~~~A~s~~~~~~iVEvMGR  223 (426)
                       .+..   ...+.+-+-++=+|
T Consensus       114 -~i~~---g~~~~iDlg~vn~~  131 (305)
T PRK13337        114 -VIIE---GHSVPVDIGKANDR  131 (305)
T ss_pred             -HHHC---CCEEEEEEEEECCE
T ss_conf             -7616---97599877998999


No 27 
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=94.49  E-value=0.22  Score=28.35  Aligned_cols=53  Identities=25%  Similarity=0.374  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             4569999999986399889994882578999999999985189962885222234772
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI  181 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi  181 (426)
                      .++.+++++.+++.+.|.+|.|||--++..|..++.+     .++|+|.||-|--++-
T Consensus        70 ~~~v~~~~~~~~~~~~D~IiavGGGS~iD~AKaia~~-----~~~P~i~IPTtAgTgS  122 (366)
T PRK09423         70 DNEIDRLVAIAEENGCDVIIGIGGGKTLDTAKAVADY-----LGVPVVIVPTIASTDA  122 (366)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH-----CCCCEEEECCCCCCCC
T ss_conf             9999999999986499989993783887779999998-----2899799568666788


No 28 
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.40  E-value=0.034  Score=33.65  Aligned_cols=120  Identities=13%  Similarity=0.094  Sum_probs=65.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
                      +||||+.--+ .|..-...+.+++.+..  +|++|+--..-+                   +.   .|. +-..+.    
T Consensus         1 MKigIv~n~~-k~~a~~~a~~l~~~L~~--~g~~v~ld~~~~-------------------~~---~~~-~~~~~~----   50 (278)
T PRK03708          1 MRFGIVARRD-KEEALKLAYRVYDFLKV--SGYEVVVDSDTY-------------------EH---LPQ-FSEEDV----   50 (278)
T ss_pred             CEEEEEEECC-CHHHHHHHHHHHHHHHH--CCCEEEEEHHHH-------------------HH---CCC-CCCCCC----
T ss_conf             9999992189-98999999999999998--899899974786-------------------56---665-555676----


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG  189 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG  189 (426)
                                            ..+.+.+.|.++++|||||+-.|..++      ..++||+||--       |   ++|
T Consensus        51 ----------------------~~~~~~~~Dlvi~lGGDGT~L~a~~~~------~~~iPilGiN~-------G---~lG   92 (278)
T PRK03708         51 ----------------------LPLEEFDVDFILAIGGDGTILRIEHKT------KKEIPILSINM-------G---TLG   92 (278)
T ss_pred             ----------------------CCCCCCCCCEEEEECCCHHHHHHHHHC------CCCCCEEEEEC-------C---CCC
T ss_conf             ----------------------754357878999987868999999964------78998898835-------8---753


Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             565999--9999999999877516661699
Q gi|254780227|r  190 ALTAAQ--VSACFFDNISNERSATPRSLII  217 (426)
Q Consensus       190 fdTA~~--~~a~~i~~l~~~A~s~~~~~~i  217 (426)
                      |-|.++  .+.++++++...--.-..|..+
T Consensus        93 FLt~~~~~~~~~~l~~i~~g~y~ie~r~~l  122 (278)
T PRK03708         93 FLTEVEPEDTFFALSRLLEGEYYIDERIKL  122 (278)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             035568789999999997289747731379


No 29 
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.21  E-value=0.075  Score=31.39  Aligned_cols=128  Identities=18%  Similarity=0.208  Sum_probs=71.4

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
                      +||||+.-- ..|.....++.+++.+..  ++.+|+ +...+...+..+.               ..-....+...    
T Consensus         1 MKIaIigk~-~~~~~~~~~~~Li~~L~~--~g~~v~-le~~~a~~l~~~~---------------~~~~~~~~~~~----   57 (290)
T PRK01911          1 MKIAIFGQT-YQASKSPHIKRLFELLEE--HGAEIY-IEEEFLNFLTQDL---------------KFEPKYKGFFD----   57 (290)
T ss_pred             CEEEEECCC-CCHHHHHHHHHHHHHHHH--CCCEEE-EEHHHHHHHHHCC---------------CCCCCCCCCCC----
T ss_conf             999998888-984799999999999998--899899-9768978776512---------------56643123211----


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG  189 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG  189 (426)
                                              ....+.|.++++|||||+-.|.+...     ..++||+||-.          =++|
T Consensus        58 ------------------------~~~~~~Dlvi~iGGDGT~L~a~~~~~-----~~~iPilGiN~----------G~lG   98 (290)
T PRK01911         58 ------------------------GNNFDFDMVISIGGDGTFLRAAARVG-----NSGIPILGINT----------GRLG   98 (290)
T ss_pred             ------------------------CCCCCCCEEEEECCCHHHHHHHHHHH-----HCCCCEEEEEC----------CCCE
T ss_conf             ------------------------35777779999787689999999861-----25996899944----------8813


Q ss_pred             HHHHH--HHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             56599--99999999999877516661699997
Q gi|254780227|r  190 ALTAA--QVSACFFDNISNERSATPRSLIIHEV  220 (426)
Q Consensus       190 fdTA~--~~~a~~i~~l~~~A~s~~~~~~iVEv  220 (426)
                      |-|.+  +.+-++++++....-.-..|..+ |+
T Consensus        99 FL~~~~~~~~~~~l~~i~~g~y~~~~r~~l-~~  130 (290)
T PRK01911         99 FLADVSPEEIEETIDELLQGKYTIEERSLL-QL  130 (290)
T ss_pred             EEECCCHHHHHHHHHHHHCCCCEEEEEEEE-EE
T ss_conf             750368889999999998699789877259-99


No 30 
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=94.21  E-value=0.059  Score=32.09  Aligned_cols=41  Identities=20%  Similarity=0.304  Sum_probs=30.6

Q ss_pred             HCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf             63998899948825789999999999851899628852222347722211463356
Q gi|254780227|r  136 QSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGAL  191 (426)
Q Consensus       136 ~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfd  191 (426)
                      -.+.|.+|++||||||-.+.+...     ..++|++||=.          =++||-
T Consensus        23 ~~eaDliIvlGGDGT~L~a~r~~~-----~~~~PilGIN~----------G~lGFL   63 (246)
T PRK04761         23 IEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR----------GTVGFL   63 (246)
T ss_pred             HHHCCEEEEECCCHHHHHHHHHHH-----CCCCCEEEEEC----------CCCCCC
T ss_conf             657999999898799999999874-----14993798977----------977754


No 31 
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.20  E-value=0.15  Score=29.41  Aligned_cols=66  Identities=18%  Similarity=0.160  Sum_probs=40.8

Q ss_pred             HHHHHHHHHC-------CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHH--HHHHH
Q ss_conf             9999999863-------99889994882578999999999985189962885222234772221146335659--99999
Q gi|254780227|r  128 EVSAHHLMQS-------GVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTA--AQVSA  198 (426)
Q Consensus       128 ~~~~~~l~~~-------~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA--~~~~a  198 (426)
                      +.+.+-++++       +=|.+++||||||+-.|.+....   ...++|++||=.       |   ++||-|-  .+...
T Consensus        18 ~~~~~~l~~~~~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~---~~~~vPilGIN~-------G---~lGFLt~~~~~~~~   84 (265)
T PRK04885         18 SKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYEN---QLDKVRFVGVHT-------G---HLGFYTDWRDFEVD   84 (265)
T ss_pred             HHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHC---CCCCCCEEEEEC-------C---CEEEECCCCHHHHH
T ss_conf             9999999876985587789999998873999999998630---367975898735-------8---52576147878999


Q ss_pred             HHHHHHHH
Q ss_conf             99999998
Q gi|254780227|r  199 CFFDNISN  206 (426)
Q Consensus       199 ~~i~~l~~  206 (426)
                      ++++++..
T Consensus        85 ~~l~~i~~   92 (265)
T PRK04885         85 KLVIALAK   92 (265)
T ss_pred             HHHHHHHC
T ss_conf             99999982


No 32 
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.05  E-value=0.074  Score=31.44  Aligned_cols=66  Identities=20%  Similarity=0.226  Sum_probs=42.3

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHCCCC
Q ss_conf             39988999488257899999999998518996288522223477222114633565999--9999999999877516661
Q gi|254780227|r  137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQ--VSACFFDNISNERSATPRS  214 (426)
Q Consensus       137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~--~~a~~i~~l~~~A~s~~~~  214 (426)
                      -++|-+|++|||||+-.|++...     .+++||+||=-          =++||-|.++  ..-+.++++...--.-.+|
T Consensus        67 ~~~Dl~IvlGGDGT~L~aar~~~-----~~~iPilGIN~----------G~LGFLt~i~~~~~~~~l~~il~g~y~ie~R  131 (305)
T PRK02649         67 SSMKFAIVLGGDGTVLSAARQTA-----PCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQLLAGQYTIEER  131 (305)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEEC----------CCEEEECCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             77339999837699999999853-----36997898944----------8623404479889999999998299658886


Q ss_pred             EEE
Q ss_conf             699
Q gi|254780227|r  215 LII  217 (426)
Q Consensus       215 ~~i  217 (426)
                      .++
T Consensus       132 ~~L  134 (305)
T PRK02649        132 TML  134 (305)
T ss_pred             EEE
T ss_conf             568


No 33 
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.94  E-value=0.082  Score=31.15  Aligned_cols=129  Identities=18%  Similarity=0.220  Sum_probs=73.9

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r   27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV  106 (426)
Q Consensus        27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~  106 (426)
                      ..-|+|||+.-= ..|..-.....+.+.+..  ++.+|+- ..-....+                          +....
T Consensus         3 ~~fk~IgIi~k~-~~~~a~~~~~~l~~~L~~--~g~~v~l-d~~~a~~l--------------------------~~~~~   52 (292)
T PRK03378          3 NHFKCIGIVGHP-RHPTALTTHEMLYRWLCT--KGYEVIV-EQQIAHEL--------------------------QLKNV   52 (292)
T ss_pred             CCCCEEEEEEEC-CCHHHHHHHHHHHHHHHH--CCCEEEE-CHHHHHHC--------------------------CCCCC
T ss_conf             769899999527-985899999999999997--8998998-34787652--------------------------99865


Q ss_pred             CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             88653011101234567456999999998639988999488257899999999998518996288522223477222114
Q gi|254780227|r  107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ  186 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~  186 (426)
                      ..                .++.    .+ ..+.|-+|++|||||+-.|.++..     .+++|++||=.          =
T Consensus        53 ~~----------------~~~~----~~-~~~~Dlvi~lGGDGT~L~aar~~~-----~~~~PilGIN~----------G   96 (292)
T PRK03378         53 KT----------------GTLA----EI-GQQADLAVVVGGDGNMLGAARTLA-----RYDIKVIGINR----------G   96 (292)
T ss_pred             CC----------------CCHH----HH-CCCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEEC----------C
T ss_conf             54----------------7866----85-305689999777889999999854-----36996898837----------9


Q ss_pred             CCCHHHHH--HHHHHHHHHHHHHHHHCCCCEEE-EEEC
Q ss_conf             63356599--99999999999877516661699-9976
Q gi|254780227|r  187 SLGALTAA--QVSACFFDNISNERSATPRSLII-HEVM  221 (426)
Q Consensus       187 tiGfdTA~--~~~a~~i~~l~~~A~s~~~~~~i-VEvM  221 (426)
                      ++||-|.+  +...+.++++..---...+|..+ +++.
T Consensus        97 ~lGFLt~~~~~~~~~~l~~i~~g~~~~~~R~~L~~~v~  134 (292)
T PRK03378         97 NLGFLTDLDPDNAQQQLADVLEGHYISEKRFLLEAQVC  134 (292)
T ss_pred             CCEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEE
T ss_conf             83688867878999999999838957711325899997


No 34 
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.87  E-value=0.24  Score=28.12  Aligned_cols=80  Identities=14%  Similarity=0.146  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHC---------CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH--H
Q ss_conf             99999999863---------998899948825789999999999851899628852222347722211463356599--9
Q gi|254780227|r  127 LEVSAHHLMQS---------GVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA--Q  195 (426)
Q Consensus       127 ~~~~~~~l~~~---------~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~--~  195 (426)
                      .+.+.+.++++         +-|.+++||||||+-.|.+....    ....+++||...         =++||-|.+  +
T Consensus        19 ~~~~~~~~~~~g~~~vdd~~~aDliI~iGGDGT~L~a~r~~~~----~~~~~~lGin~~---------G~lGFL~~~~~~   85 (264)
T PRK03501         19 VKPLKKIAEENGFTVVDDPKNANIIVSIGGDGTFLQAVRKTGF----REDCLYAGISTK---------DQISFYCDFHID   85 (264)
T ss_pred             HHHHHHHHHHCCCEEECCCCCCCEEEEECCHHHHHHHHHHHHC----CCCCEEEEEECC---------CCCEECCCCCHH
T ss_conf             9999999998798884898898999999971999999998734----489819999769---------844664678878


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             9999999999877516661699997
Q gi|254780227|r  196 VSACFFDNISNERSATPRSLIIHEV  220 (426)
Q Consensus       196 ~~a~~i~~l~~~A~s~~~~~~iVEv  220 (426)
                      ..-++++++...--... +..++|+
T Consensus        86 ~~~~~l~~i~~g~~~~~-~~~ll~~  109 (264)
T PRK03501         86 HVDKMIQAATKEEIEVR-KYPTIEV  109 (264)
T ss_pred             HHHHHHHHHHCCCCEEE-EEEEEEE
T ss_conf             99999999976996699-9867999


No 35 
>PRK04759 consensus
Probab=93.83  E-value=0.09  Score=30.90  Aligned_cols=125  Identities=14%  Similarity=0.166  Sum_probs=69.7

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             63379998368775148999999999999856997899983836601079913046269888874640787400336788
Q gi|254780227|r   28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK  107 (426)
Q Consensus        28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~  107 (426)
                      .-|+|||+.-= ..|-.=...+.+++.+..  .+.+||- .......+.+                  .+     ..+..
T Consensus         4 ~f~~I~Iv~k~-~~~~~~~~~~~l~~~L~~--~g~~v~v-d~~~~~~l~~------------------~~-----~~~~~   56 (294)
T PRK04759          4 PFNVIAIIGKP-RDQQAIQTHKELYHWLTS--LGYTVFI-DDRLAAILTD------------------VP-----QEHFA   56 (294)
T ss_pred             CCCEEEEEEEC-CCHHHHHHHHHHHHHHHH--CCCEEEE-CHHHHHHCCC------------------CC-----CCCCC
T ss_conf             99799999417-997999999999999986--8999999-1688655334------------------77-----22237


Q ss_pred             CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             86530111012345674569999999986399889994882578999999999985189962885222234772221146
Q gi|254780227|r  108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS  187 (426)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t  187 (426)
                                        +..    .+ ..+.|-++++|||||+-.+.++..     .+++||+||=          -=+
T Consensus        57 ------------------~~~----~l-~~~~Dlvi~lGGDGTlL~aar~~~-----~~~~PilgiN----------~G~   98 (294)
T PRK04759         57 ------------------SLV----EL-GKKADLAIVVGGDGNMLGAARVLS-----RFDISVIGVN----------RGN   98 (294)
T ss_pred             ------------------CHH----HC-CCCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEE----------CCC
T ss_conf             ------------------755----63-766568999847858999999860-----1699689884----------586


Q ss_pred             CCHHHHH--HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             3356599--99999999999877516661699
Q gi|254780227|r  188 LGALTAA--QVSACFFDNISNERSATPRSLII  217 (426)
Q Consensus       188 iGfdTA~--~~~a~~i~~l~~~A~s~~~~~~i  217 (426)
                      +||-|.+  +.+.+.++++..-.-...+|..+
T Consensus        99 lGFLt~~~~~~~~~~l~~il~g~~~~~~R~~L  130 (294)
T PRK04759         99 LGFLTDLNPEDFQERLQAVLDGEYIEEERFLL  130 (294)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             46741468889999999997599579663148


No 36 
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.80  E-value=0.17  Score=29.16  Aligned_cols=113  Identities=15%  Similarity=0.202  Sum_probs=64.4

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             63379998368775148999999999999856997899983836601079913046269888874640787400336788
Q gi|254780227|r   28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK  107 (426)
Q Consensus        28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~  107 (426)
                      .-|||||+.-=+ .|..-...+.+.+.+..  .+.+|+--..-.. .                     .++.-+....  
T Consensus         3 ~~k~vgIv~k~~-~~~a~~~~~~l~~~L~~--~gi~v~ld~~~a~-~---------------------~~~~~~~~~~--   55 (296)
T PRK01231          3 QFRNIGLIGRLG-SSQVVETLRRLKRFLLD--RHLHVILEEETAE-V---------------------LPGHGLQTVS--   55 (296)
T ss_pred             CCCEEEEEEECC-CHHHHHHHHHHHHHHHH--CCCEEEEEHHHHH-H---------------------CCCCCCCCCC--
T ss_conf             998999998489-87999999999999987--8899999324776-6---------------------5878866245--


Q ss_pred             CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             86530111012345674569999999986399889994882578999999999985189962885222234772221146
Q gi|254780227|r  108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS  187 (426)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t  187 (426)
                                         .+     ......|-++++|||||+-.+.+...     ..++||+||=.          =+
T Consensus        56 -------------------~~-----~~~~~~Dlii~lGGDGT~L~~~~~~~-----~~~~PilGiN~----------G~   96 (296)
T PRK01231         56 -------------------RK-----LLGEVCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR----------GR   96 (296)
T ss_pred             -------------------HH-----HCCCCEEEEEEECCCCHHHHHHHHHC-----CCCCCEEEEEC----------CC
T ss_conf             -------------------33-----41653049999578728999999960-----36997898855----------87


Q ss_pred             CCHHHHHH--HHHHHHHHHHH
Q ss_conf             33565999--99999999998
Q gi|254780227|r  188 LGALTAAQ--VSACFFDNISN  206 (426)
Q Consensus       188 iGfdTA~~--~~a~~i~~l~~  206 (426)
                      +||-|.++  ...+.++++..
T Consensus        97 lGFL~~~~~~~~~~~l~~i~~  117 (296)
T PRK01231         97 LGFLTDIRPDELEFKLAEVLD  117 (296)
T ss_pred             CEEECCCCHHHHHHHHHHHHH
T ss_conf             006345688999999999981


No 37 
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=93.79  E-value=0.11  Score=30.24  Aligned_cols=52  Identities=19%  Similarity=0.411  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             4569999999986399889994882578999999999985189962885222234772
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI  181 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi  181 (426)
                      -++.-.+++.+.+.+.|-++..|||||.+..+.-.      +.++||+|||.-.-|=.
T Consensus        86 a~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av------~~~vPvLGipaGvk~~S  137 (355)
T COG3199          86 AEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV------GADVPVLGIPAGVKNYS  137 (355)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHC------CCCCCEEEECCCCCEEC
T ss_conf             79999999999865961999957885299998532------67886674135650203


No 38 
>PRK00861 putative lipid kinase; Reviewed
Probab=93.65  E-value=0.19  Score=28.84  Aligned_cols=133  Identities=14%  Similarity=0.105  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             69999999986399889994882578999999999985189962885222234772221146335659999999999999
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS  205 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~  205 (426)
                      +-..+++...+.+.|.++++|||||+.-+..-   +.  +.++++--||.==-||+.   .++|.......+++.|.+  
T Consensus        45 ~a~~la~~a~~~~~d~vv~~GGDGTv~ev~~g---l~--~~~~~lgiiP~GTgNdfA---r~lgip~~~~~a~~~i~~--  114 (296)
T PRK00861         45 GADALAQEAVERGAELIIASGGDGTISAVAGA---LI--GTDIPLGIIPRGTANAFA---VALGIPDTLEQACETILQ--  114 (296)
T ss_pred             CHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH---HC--CCCCCEEEEECCCHHHHH---HHCCCCCCHHHHHHHHHC--
T ss_conf             69999999986799899998881899999975---33--589616998076657999---983999899999999852--


Q ss_pred             HHHHHCCCCEEEEEECCCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             8775166616999976987------4289999874014332310111111100014576523287865598999999999
Q gi|254780227|r  206 NERSATPRSLIIHEVMGRN------CGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSK  279 (426)
Q Consensus       206 ~~A~s~~~~~~iVEvMGR~------aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~  279 (426)
                          ...+++-+..+=||.      .|+.|..+..+..           ..+...+             .+--+...++.
T Consensus       115 ----g~~~~iDlg~~n~~~f~~~ag~G~da~v~~~~~~-----------~~k~~~G-------------~~aY~~~~l~~  166 (296)
T PRK00861        115 ----GKTRRVDVAYCNGQPMILLAGIGFEAETVEEADR-----------EAKNRFG-------------ILAYILSGLQQ  166 (296)
T ss_pred             ----CCEEEEEEEEECCEEEEEEECCCCCHHHHHHHHH-----------HHHCCCC-------------HHHHHHHHHHH
T ss_conf             ----9869988999999999999530500799987657-----------7510665-------------69999999999


Q ss_pred             HHHCCCCEEEEEECCCC
Q ss_conf             85028953899504211
Q gi|254780227|r  280 VMEKKGSVAIFVSEGAC  296 (426)
Q Consensus       280 ~~~~~~~~vIVvsEG~~  296 (426)
                      ..+.+.+-+.+..+|..
T Consensus       167 l~~~~~~~~~i~~d~~~  183 (296)
T PRK00861        167 LQELEPFEVEIETEDQI  183 (296)
T ss_pred             HHHCCCEEEEEEECCEE
T ss_conf             86079749999999999


No 39 
>PRK13057 putative lipid kinase; Reviewed
Probab=93.63  E-value=0.5  Score=26.10  Aligned_cols=86  Identities=23%  Similarity=0.247  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             45699999999863998899948825789999999999851899628852222347722211463356599999999999
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDN  203 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~  203 (426)
                      ..+...+++.+ ..+.|.+++.|||||...+..-.   .  +.++++--||.=-=||+.   .++|...-...+++.   
T Consensus        37 ~g~a~~~~~~~-~~~~d~vv~~GGDGTv~ev~~gl---~--~~~~~lgiiP~GTgNdfA---r~lgip~d~~~a~~~---  104 (287)
T PRK13057         37 PADLSEVIEAH-ADGVDLVIVGGGDGTLNAAAPAL---V--ETGLPLGILPLGTANDLA---RTLGIPLDLEAAARV---  104 (287)
T ss_pred             HHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHH---C--CCCCCEEEECCCCHHHHH---HHCCCCCCHHHHHHH---
T ss_conf             78999999998-66999899988589999999986---0--579836997388646789---983999899999999---


Q ss_pred             HHHHHHHCCCCEEEEEECCCC
Q ss_conf             998775166616999976987
Q gi|254780227|r  204 ISNERSATPRSLIIHEVMGRN  224 (426)
Q Consensus       204 l~~~A~s~~~~~~iVEvMGR~  224 (426)
                      +.   ....+++-+-++-||.
T Consensus       105 i~---~g~~~~iDlg~vn~~~  122 (287)
T PRK13057        105 IA---RGKVRRIDLGWVNGHY  122 (287)
T ss_pred             HH---CCCEEEEEEEEECCEE
T ss_conf             86---5984999688888989


No 40 
>TIGR00147 TIGR00147 conserved hypothetical protein TIGR00147; InterPro: IPR005218   Although the proteins in this group all contain the diacylglycerol kinase catalytic domain, their function is, as yet, unknown..
Probab=93.50  E-value=0.43  Score=26.52  Aligned_cols=123  Identities=17%  Similarity=0.180  Sum_probs=77.5

Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHHHHHHH
Q ss_conf             26988887464078740033678886530111012345674569999999986399889994882578999-99999998
Q gi|254780227|r   84 EDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTA-CDLLRYLK  162 (426)
Q Consensus        84 ~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a-~~L~e~~~  162 (426)
                      +..|..+-..+..-+....+.-+.-.            -..++.-+.++...+++++.+|++|||||+.-. +.|.+ ++
T Consensus        20 ~~~L~~v~~~L~~~~~e~~~~~T~~~------------Ghaed~A~~~~~~~~~~~~~vi~~GGDGTi~ev~naL~~-~d   86 (316)
T TIGR00147        20 EKALKEVVKKLEKEGVEVRVKLTKKK------------GHAEDAARAVKEAAEYKVDTVIALGGDGTIHEVVNALKD-LD   86 (316)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCC------------CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH-HC
T ss_conf             67799999999857775999851678------------846689999999874466689996189848999888875-12


Q ss_pred             HCCCCCEEEE-ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHH
Q ss_conf             5189962885-22223477222114633565999999999999987751666169999769874-2899
Q gi|254780227|r  163 EKNYNITVVG-LPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNC-GWLT  229 (426)
Q Consensus       163 ~~~~~i~vig-iPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~a-G~LA  229 (426)
                      .  .+||-+| +|.==.||..   .++|=.  -+...++++.+..   ...+.+.+-+|=+|+| +-+-
T Consensus        87 ~--~diP~lg~~P~Gt~NDFs---r~lgIp--~~~L~ka~~~~~~---G~~~~~d~gqvN~~~~ksqil  145 (316)
T TIGR00147        87 D--KDIPALGILPVGTANDFS---RALGIP--KEDLIKAAKKVIA---GKARAIDLGQVNKQYDKSQIL  145 (316)
T ss_pred             C--CCCCEEEEECCCCCCCHH---HHCCCC--HHHHHHHHHHHHC---CCCCEEEEECCCCCCHHHHHH
T ss_conf             5--778824543576555033---313875--8999999999838---897346642226720046787


No 41 
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.46  E-value=0.12  Score=30.04  Aligned_cols=128  Identities=14%  Similarity=0.196  Sum_probs=72.3

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCCCCC
Q ss_conf             63379998368775148999999999999856997899983836601079913046269888874640787-40033678
Q gi|254780227|r   28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGNSRV  106 (426)
Q Consensus        28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~LgtsR~  106 (426)
                      .-|+|||+.-=+ .|..-.+.+.+.+.+..  ++.+||--......+        ..      .. ....| .++.  + 
T Consensus         4 ~fk~Igiv~k~~-~~~~~~~~~~l~~~L~~--~g~~v~ld~~~~~~~--------~~------~~-~~~~~~~~~~--~-   62 (296)
T PRK04539          4 PFHNIGIVTRPN-TPDIQDTAHTLITFLKQ--HGFTVYLDEVGVKEG--------CI------YT-QDTVGCHIVN--K-   62 (296)
T ss_pred             CCCEEEEEEECC-CHHHHHHHHHHHHHHHH--CCCEEEEECCHHHHC--------CC------CC-CCCCCCCCCC--H-
T ss_conf             997899997089-87999999999999997--879999965411203--------54------64-3345655468--6-


Q ss_pred             CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             88653011101234567456999999998639988999488257899999999998518996288522223477222114
Q gi|254780227|r  107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ  186 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~  186 (426)
                           .                    .+ ....|-++++|||||+-.|.++..     .+++||+||=.          =
T Consensus        63 -----~--------------------~~-~~~~Dlii~lGGDGTlL~a~r~~~-----~~~~PilGiN~----------G  101 (296)
T PRK04539         63 -----T--------------------EL-GQYCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ----------G  101 (296)
T ss_pred             -----H--------------------HH-CCCCCEEEEECCCHHHHHHHHHHH-----HCCCCEEEEEC----------C
T ss_conf             -----7--------------------81-646779999787089999999860-----05997899844----------7


Q ss_pred             CCCHHHHH--HHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             63356599--99999999999877516661699
Q gi|254780227|r  187 SLGALTAA--QVSACFFDNISNERSATPRSLII  217 (426)
Q Consensus       187 tiGfdTA~--~~~a~~i~~l~~~A~s~~~~~~i  217 (426)
                      ++||-|.+  +...+.++++..---....|..+
T Consensus       102 ~lGFLt~~~~~~~~~~l~~il~g~~~~~~R~~l  134 (296)
T PRK04539        102 HLGFLTQIPREYMTDKLLPVLEGKYLAEERILI  134 (296)
T ss_pred             CEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             544525668799999999997589636243007


No 42 
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.30  E-value=0.13  Score=29.76  Aligned_cols=52  Identities=23%  Similarity=0.421  Sum_probs=36.7

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH--HHHHHHHH
Q ss_conf             39988999488257899999999998518996288522223477222114633565999--99999999
Q gi|254780227|r  137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQ--VSACFFDN  203 (426)
Q Consensus       137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~--~~a~~i~~  203 (426)
                      .+.|-+++||||||+-.+.+...     ..++||+||-.          =++||-|.++  ..-+.+++
T Consensus        41 ~~~Dlii~iGGDGT~L~a~r~~~-----~~~iPilGiN~----------G~lGFL~~~~~~~~~~~l~~   94 (272)
T PRK02231         41 QRAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR----------GNLGFLTDIDPKNAYSQLEA   94 (272)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-----CCCCCEEEECC----------CCCEEEECCCHHHHHHHHHH
T ss_conf             17789999787589999999860-----05997896537----------88627422585889999999


No 43 
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.16  E-value=0.13  Score=29.83  Aligned_cols=133  Identities=14%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             87633799983687751489999999999998569978999838366010799130462698888746407874003367
Q gi|254780227|r   26 DMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSR  105 (426)
Q Consensus        26 ~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR  105 (426)
                      +++.|||+|+.==+. |..-...+.+.+.+..  .+.+|+-...-..-+....                    ..++...
T Consensus         1 m~~~R~V~IV~k~~~-~~a~~~a~~l~~~L~~--~g~~v~v~~~~~~~~~~~~--------------------~~~~~~~   57 (303)
T PRK03372          1 MTAERTVLLVAHTGR-DEATESARRVVKQLGD--AGIGVRVLAAEAADLPDDM--------------------RALGVEI   57 (303)
T ss_pred             CCCCCEEEEEECCCC-HHHHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCC--------------------CCCCCCC
T ss_conf             998888999970899-8999999999999997--8898999704010024445--------------------5556542


Q ss_pred             CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             88865301110123456745699999999863998899948825789999999999851899628852222347722211
Q gi|254780227|r  106 VKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH  185 (426)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td  185 (426)
                      .....                     +.....++|-++++|||||+-.+.++..     ..++||+||=-          
T Consensus        58 ~~~~~---------------------~~~~~~~~Dlvi~lGGDGT~L~aar~~~-----~~~iPilGiN~----------  101 (303)
T PRK03372         58 EVVDA---------------------DPDAADGCELVLVLGGDGTFLRAAELAR-----NADVPVLGVNL----------  101 (303)
T ss_pred             CCCCC---------------------CCCCCCCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEEC----------
T ss_conf             23453---------------------2233578558999778789999999844-----47998898725----------


Q ss_pred             CCCCHHHHHH--HHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             4633565999--9999999999877516661699
Q gi|254780227|r  186 QSLGALTAAQ--VSACFFDNISNERSATPRSLII  217 (426)
Q Consensus       186 ~tiGfdTA~~--~~a~~i~~l~~~A~s~~~~~~i  217 (426)
                      =++||-|.+.  .+.++++++...--.-.+|..+
T Consensus       102 G~lGFLt~~~~~~~~~~l~~i~~g~~~ie~R~~l  135 (303)
T PRK03372        102 GHVGFLAEAEREDLDEAVERVVDRDYRVEERMTL  135 (303)
T ss_pred             CCCEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             9821312469889999999998089758762047


No 44 
>pfam00465 Fe-ADH Iron-containing alcohol dehydrogenase.
Probab=92.58  E-value=0.45  Score=26.37  Aligned_cols=57  Identities=16%  Similarity=0.300  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH-------------CCCCCEEEEECCCCCCC
Q ss_conf             4569999999986399889994882578999999999985-------------18996288522223477
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKE-------------KNYNITVVGLPKTIDND  180 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~-------------~~~~i~vigiPKTIDND  180 (426)
                      .++++++++.+++++.|.+|.|||.-++..|..++-....             ....+|+|.||-|--.+
T Consensus        65 ~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTG  134 (312)
T pfam00465        65 LEEVDEAAAAAREEGADVIIAVGGGSVIDTAKAIALLLTNPGDVWDYLGGKKLTKPALPLIAIPTTAGTG  134 (312)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEEEECCCCCC
T ss_conf             9999999999996499899980897612499999999719998899855765556789889971786677


No 45 
>PRK11914 diacylglycerol kinase; Reviewed
Probab=92.30  E-value=0.46  Score=26.33  Aligned_cols=60  Identities=22%  Similarity=0.295  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf             56999999998639988999488257899999999998518996288522223477222114633565
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALT  192 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdT  192 (426)
                      .+...+++...+.+.|.++++|||||...+..-   +.  +.++++--||.===||+.   .++|..+
T Consensus        49 ~~a~~la~~a~~~g~d~vv~~GGDGTv~ev~~~---l~--~~~~plgiiP~GTgNdfA---r~lgip~  108 (304)
T PRK11914         49 HHARHLVAAALAKGTDALVVVGGDGVISNALQV---LA--GTDIPLGIIPAGTGNDHA---REFGIPT  108 (304)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH---HC--CCCCEEEEECCCCHHHHH---HHCCCCC
T ss_conf             899999998886499699999562598898764---13--578608996388726889---9729998


No 46 
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=92.04  E-value=0.78  Score=24.84  Aligned_cols=54  Identities=19%  Similarity=0.266  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH---------------HCCCCCEEEEECCCC
Q ss_conf             456999999998639988999488257899999999998---------------518996288522223
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLK---------------EKNYNITVVGLPKTI  177 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~---------------~~~~~i~vigiPKTI  177 (426)
                      .+..+++++.+++.+.|.+|.+||--++.+|..++-...               ..+..+|+|.||-|=
T Consensus        72 ~~~V~~~~~~~r~~~~D~IiavGGGSviD~AKaia~~~~~~~~~~~~~~~g~~~~~~~~lP~iaIPTTa  140 (381)
T PRK10624         72 ISVVKEGLEVFQASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLAPTKKPSVPIIAIPTTA  140 (381)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCEEEEECCC
T ss_conf             999999999998649998998089408889999999970985114787526565557888889974897


No 47 
>PRK13059 putative lipid kinase; Reviewed
Probab=91.96  E-value=0.56  Score=25.75  Aligned_cols=86  Identities=20%  Similarity=0.263  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             69999999986399889994882578999999999985189962885222234772221146335659999999999999
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS  205 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~  205 (426)
                      +.+.+.+.+ +.+.|.++++|||||..-+..-   +...+.++++--+|.=--||+.   .++|...-..   ++++.+.
T Consensus        45 ~~~~a~~~~-~~~~d~vv~~GGDGTinevvng---l~~~~~~~~lgiiP~GTgNdfA---r~Lgip~~~~---~a~~~i~  114 (294)
T PRK13059         45 DLKEAFKDI-DESYKYILIAGGDGTVDNVVNA---MKKLNIDIPIGILPVGTANDFA---KFIGMPTNVG---EACEQIL  114 (294)
T ss_pred             HHHHHHHHH-HCCCCEEEEEECCCHHHHHHHH---HHHCCCCCCEEEEECCCCCHHH---HHCCCCCCHH---HHHHHHH
T ss_conf             899999988-7489889999567889999999---9856999857998267750789---9829999999---9999884


Q ss_pred             HHHHHCCCCEEEEEECCCC
Q ss_conf             8775166616999976987
Q gi|254780227|r  206 NERSATPRSLIIHEVMGRN  224 (426)
Q Consensus       206 ~~A~s~~~~~~iVEvMGR~  224 (426)
                      .   ...+.+-+-++=+|+
T Consensus       115 ~---g~~~~iDlg~vn~r~  130 (294)
T PRK13059        115 K---SKPVKVDLGKVNDKY  130 (294)
T ss_pred             C---CCEEEEEEEEECCEE
T ss_conf             3---966999887899989


No 48 
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.59  E-value=0.28  Score=27.66  Aligned_cols=53  Identities=23%  Similarity=0.254  Sum_probs=35.2

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH--HHHHHHHHHHHHH
Q ss_conf             3998899948825789999999999851899628852222347722211463356599--9999999999987
Q gi|254780227|r  137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA--QVSACFFDNISNE  207 (426)
Q Consensus       137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~--~~~a~~i~~l~~~  207 (426)
                      .+-|.+++||||||+--+.+.        ...||+||--          =++||-|.+  +.+-++++++...
T Consensus        51 ~~~Dlvi~iGGDGTlLr~~~~--------~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~~~~g  105 (272)
T PRK01185         51 ISADIIIVIGGDGTVLRTLQF--------AKGPVLGINM----------GGLGFLTEIEIDEVGSSILKLIRG  105 (272)
T ss_pred             CCCCEEEEECCCHHHHHHHHH--------CCCCEEEECC----------CCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             898899997783999999987--------7999999817----------854368848868999999999818


No 49 
>PRK10586 hypothetical protein; Provisional
Probab=89.97  E-value=1.3  Score=23.47  Aligned_cols=58  Identities=19%  Similarity=0.140  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             4569999999986399889994882578999999999985189962885222234772221146
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS  187 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t  187 (426)
                      +++++++.+.... +.|.+|-+||--++++|..++.+     .++|+|-||-.-.||=|.|-.|
T Consensus        73 ~~ei~rl~~~~~~-~~d~IigvGGGK~iDtaK~vA~~-----~~~pvv~vPTiAStcAp~S~ls  130 (362)
T PRK10586         73 ESDVAQLAAESGD-DRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTPLS  130 (362)
T ss_pred             HHHHHHHHHHHCC-CCCEEEEECCCHHHHHHHHHHHH-----CCCCEEEEECHHCCCCCCCCEE
T ss_conf             9999999997355-88789995571999999999998-----1999899605110576666137


No 50 
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=89.73  E-value=1.5  Score=22.94  Aligned_cols=53  Identities=9%  Similarity=0.190  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH-------------CCCCCEEEEECCC
Q ss_conf             4569999999986399889994882578999999999985-------------1899628852222
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKE-------------KNYNITVVGLPKT  176 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~-------------~~~~i~vigiPKT  176 (426)
                      .+..+..++-+++.+.|.+|.+||--++..|..++-....             ....+|+|.||-|
T Consensus        74 ~~~v~~~~~~~r~~~~D~ivavGGGS~iD~AKaia~~~~~~~~~~d~~g~~~~~~~~lP~iaIPTT  139 (383)
T PRK09860         74 TENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTT  139 (383)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEECCC
T ss_conf             999999999998739999999389622678999999980899889973667556888988987399


No 51 
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=89.44  E-value=1.6  Score=22.80  Aligned_cols=54  Identities=17%  Similarity=0.242  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH-------------CCCCCEEEEECCCC
Q ss_conf             4569999999986399889994882578999999999985-------------18996288522223
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKE-------------KNYNITVVGLPKTI  177 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~-------------~~~~i~vigiPKTI  177 (426)
                      .+..+..++.+++.+.|.+|.+||--++..|..++-....             .....++|.||-|=
T Consensus        72 ~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTa  138 (377)
T COG1454          72 IETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTA  138 (377)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEEEECCCC
T ss_conf             8899999999981699989997793087899999999608740666405566667899879826998


No 52 
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.40  E-value=1.6  Score=22.78  Aligned_cols=80  Identities=15%  Similarity=0.136  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999863998899948825789999999999851899628852222347722211463356599999999999998
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN  206 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~  206 (426)
                      .++.++.+.++++|++|+.++..+......+.+      .++|+|.+=...++.  .. .+++.|-. .-..++++.+..
T Consensus        43 ~e~~l~~l~~~~vDGiIi~~~~~~~~~~~~~~~------~~iPvV~i~~~~~~~--~~-~~V~~Dn~-~~~~~a~~~L~~  112 (266)
T cd06278          43 LDAALRQLLQYRVDGVIVTSGTLSSELAEECRR------NGIPVVLINRYVDGP--GV-DAVCSDNY-EAGRLAAELLLA  112 (266)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEECCCCCCC--CC-CEEEECHH-HHHHHHHHHHHH
T ss_conf             999999999559999999489899999999997------699899978768999--99-89997789-999999999998


Q ss_pred             HHHHCCCCEEEEE
Q ss_conf             7751666169999
Q gi|254780227|r  207 ERSATPRSLIIHE  219 (426)
Q Consensus       207 ~A~s~~~~~~iVE  219 (426)
                        .. |+++.++-
T Consensus       113 --~G-h~~I~~i~  122 (266)
T cd06278         113 --KG-CRRIAFIG  122 (266)
T ss_pred             --CC-CCEEEEEE
T ss_conf             --09-98899996


No 53 
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia.  This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=89.39  E-value=1.6  Score=22.78  Aligned_cols=80  Identities=13%  Similarity=0.049  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             6999999998639988999488257899999999998518996288522223477-222114633565999999999999
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND-IIPIHQSLGALTAAQVSACFFDNI  204 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND-i~~td~tiGfdTA~~~~a~~i~~l  204 (426)
                      .....++.+.++++|++|+.+...+-.....+.+      .++|+|.+=...+++ ++    ++..|- ..-..++++.+
T Consensus        43 ~e~~~l~~l~~~~vDGiIi~~~~~~~~~~~~l~~------~~iPvV~id~~~~~~~~~----~V~~d~-~~~~~~a~~~L  111 (265)
T cd06299          43 TENRYLDNLLSQRVDGIIVVPHEQSAEQLEDLLK------RGIPVVFVDREITGSPIP----FVTSDP-QPGMTEAVSLL  111 (265)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH------CCCCEEEECCCCCCCCCC----EEEECH-HHHHHHHHHHH
T ss_conf             9999999999479999999806799899999996------699899837868999886----899676-99999999999


Q ss_pred             HHHHHHCCCCEEEEE
Q ss_conf             987751666169999
Q gi|254780227|r  205 SNERSATPRSLIIHE  219 (426)
Q Consensus       205 ~~~A~s~~~~~~iVE  219 (426)
                      . + .. |+++.++-
T Consensus       112 ~-~-~G-~~~i~~i~  123 (265)
T cd06299         112 V-A-LG-HKKIGYIS  123 (265)
T ss_pred             H-H-CC-CCEEEEEC
T ss_conf             9-7-49-98388604


No 54 
>pfam01761 DHQ_synthase 3-dehydroquinate synthase. The 3-dehydroquinate synthase EC:4.6.1.3 domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide. 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.
Probab=89.13  E-value=0.57  Score=25.72  Aligned_cols=67  Identities=18%  Similarity=0.251  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             74569999999986399---88999488257899999999998518996288522223477222114633565999
Q gi|254780227|r  123 DENPLEVSAHHLMQSGV---TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQ  195 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~I---d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~  195 (426)
                      +.+.++++.+.+.+.++   |.++.+||.-....|...+...   .-+++++.||-|..+.   +|-++|.-++++
T Consensus        62 ~~~~~~~i~~~l~~~~~~r~d~iiaiGGG~v~D~ak~~A~~~---~rg~~~i~iPTt~~a~---~da~~g~k~~i~  131 (310)
T pfam01761        62 TLETVARIYDALLEKGLTRSDVIIALGGGVIGDLAGFAAATY---MRGIPFIQVPTTLLAQ---VDSSIGGKTAIN  131 (310)
T ss_pred             CHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHH---HCCCCEEEECCHHHHH---HCCCCCCCEEEE
T ss_conf             999999999999974999775499954962116899999999---7699779867088874---365553487997


No 55 
>PRK13054 lipid kinase; Reviewed
Probab=88.72  E-value=1.4  Score=23.24  Aligned_cols=88  Identities=16%  Similarity=0.150  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             56999999998639988999488257899999-99999851899628852222347722211463356599999999999
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACD-LLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDN  203 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~-L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~  203 (426)
                      .+-.+.++...+.+.|.+|++|||||..-+.. |...  ......++--||.===||+.   .++|...-...   +++.
T Consensus        43 gda~~la~~a~~~g~d~vv~~GGDGTv~evvngl~~~--~~~~~~~LgiiP~GTgNdfA---R~lgip~d~~~---a~~~  114 (299)
T PRK13054         43 GDAARYVEEALALGVATVIAGGGDGTLNEVATALAQL--EGDDRPSLGILPLGTANDFA---TAAGIPLEPDK---ALKL  114 (299)
T ss_pred             CHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHC--CCCCCCEEEEECCCCHHHHH---HHCCCCCCHHH---HHHH
T ss_conf             4599999999877998999987722999999999747--88778639996387568999---98299989999---9977


Q ss_pred             HHHHHHHCCCCEEEEEECCC
Q ss_conf             99877516661699997698
Q gi|254780227|r  204 ISNERSATPRSLIIHEVMGR  223 (426)
Q Consensus       204 l~~~A~s~~~~~~iVEvMGR  223 (426)
                      +..   ...+++-+.++=||
T Consensus       115 i~~---g~~~~iDlg~vn~~  131 (299)
T PRK13054        115 AIE---GNAQPIDLARVNDQ  131 (299)
T ss_pred             HHC---CCEEEEEEEEECCE
T ss_conf             846---98799859999998


No 56 
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=88.43  E-value=1.8  Score=22.42  Aligned_cols=55  Identities=22%  Similarity=0.317  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             745699999999863998899948825789999999999851899628852222347722
Q gi|254780227|r  123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII  182 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~  182 (426)
                      ..++.+++...+.+.+.|.++-|||--+.++|..++.     ..++|+|.||-+=.+|=+
T Consensus        69 ~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~-----~~~~pfIsvPT~AS~Da~  123 (360)
T COG0371          69 SEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAY-----RLGLPFISVPTIASTDAI  123 (360)
T ss_pred             CHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHH-----HCCCCEEECCCCCCCCCC
T ss_conf             7779999998704479998999568189999999999-----819997980576444555


No 57 
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=88.31  E-value=1.9  Score=22.30  Aligned_cols=60  Identities=17%  Similarity=0.078  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHH--CCCCEEEEECCHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             4569999999986--39988999488257899-99999999851899628852222347722211
Q gi|254780227|r  124 ENPLEVSAHHLMQ--SGVTILHTIGGDDTNTT-ACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH  185 (426)
Q Consensus       124 ~~~~~~~~~~l~~--~~Id~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td  185 (426)
                      ++++.++++.+++  .+.|++||.=|-|||.- |..|+-.++  +.+.|||-.=.=.--|-+.+|
T Consensus        65 p~~w~~la~~I~~~~~~~dG~VVtHGTDTm~~TA~aLs~~l~--~l~kPVVlTGSqrp~~~~~sD  127 (335)
T PRK09461         65 PEDWQHIADDIKANYDDYDGFVILHGTDTMAYTASALSFMLE--NLGKPVIVTGSQIPLAELRSD  127 (335)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH--CCCCCEEEECCCCCCCCCCCC
T ss_conf             999999999999887259869995374409999999999971--899877984365677666764


No 58 
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=88.26  E-value=1.9  Score=22.28  Aligned_cols=78  Identities=12%  Similarity=0.017  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             69999999986399889994882578999999999985189962885222234772221146335659999999999999
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS  205 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~  205 (426)
                      .-...++.|.++++|++|+.+-+.+-.....|.+      .++|+|.+    |.+.++.+ |+.+|-. .....+++.+.
T Consensus        43 ~e~~~l~~l~~~~vDGiIl~~~~~~~~~~~~l~~------~~iPvV~i----~~~~~~~~-~V~~Dn~-~~~~~a~~~L~  110 (259)
T cd01542          43 KEIEALELLARQKVDGIILLATTITDEHREAIKK------LNVPVVVV----GQDYPGIS-SVVYDDY-GAGYELGEYLA  110 (259)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEE----CCCCCCCC-EEEECHH-HHHHHHHHHHH
T ss_conf             9999999999569998999377777599999996------69999995----98689998-8998679-99999999999


Q ss_pred             HHHHHCCCCEEEE
Q ss_conf             8775166616999
Q gi|254780227|r  206 NERSATPRSLIIH  218 (426)
Q Consensus       206 ~~A~s~~~~~~iV  218 (426)
                      .  .. |+++.++
T Consensus       111 ~--~G-hr~I~~i  120 (259)
T cd01542         111 Q--QG-HKNIAYL  120 (259)
T ss_pred             H--HC-CCEEEEE
T ss_conf             8--28-9859999


No 59 
>PRK13055 putative lipid kinase; Reviewed
Probab=88.18  E-value=1.9  Score=22.41  Aligned_cols=59  Identities=17%  Similarity=0.248  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf             6999999998639988999488257899999-99999851899628852222347722211463356
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACD-LLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGAL  191 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~-L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfd  191 (426)
                      +-..+.+...+.+.|.++++|||||..-+.. |+    ......++--||.===||+.   .++|..
T Consensus        47 ~a~~~a~~a~~~g~d~Iva~GGDGTinevvngl~----~~~~~~~LgiIP~GTgNDfA---r~Lgip  106 (334)
T PRK13055         47 SAKNEARRAAKAGFDLIIAAGGDGTINEVVNGIA----PLEKRPKMAIIPAGTTNDYA---RALKIP  106 (334)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH----CCCCCCEEEEEECCCCHHHH---HHCCCC
T ss_conf             7999999876579989999877608999999873----46999718998077707899---982999


No 60 
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=87.99  E-value=2  Score=22.18  Aligned_cols=81  Identities=10%  Similarity=0.044  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             56999999998639988999488257899999999998518996288522223477222114633565999999999999
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNI  204 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l  204 (426)
                      +.....+++|.++++|++|+++...+......+.      ..++|+|.+=.+.+..++    ++++|..- ....+++.+
T Consensus        43 ~~~~~~i~~l~~~~vdGiI~~~~~~~~~~~~~~~------~~~iPvV~i~~~~~~~~~----~V~~Dn~~-~~~~a~~~L  111 (264)
T cd01574          43 EALRAAVRRLLAQRVDGVIVNAPLDDADAALAAA------PADVPVVFVDGSPSPRVS----TVSVDQEG-GARLATEHL  111 (264)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH------HCCCCEEEECCCCCCCCC----EEEECHHH-HHHHHHHHH
T ss_conf             9999999999964999999916889969999998------589968998667999998----89978899-999999999


Q ss_pred             HHHHHHCCCCEEEEE
Q ss_conf             987751666169999
Q gi|254780227|r  205 SNERSATPRSLIIHE  219 (426)
Q Consensus       205 ~~~A~s~~~~~~iVE  219 (426)
                      ..  ..+ +++.++-
T Consensus       112 ~~--~G~-~~i~~i~  123 (264)
T cd01574         112 LE--LGH-RTIAHVA  123 (264)
T ss_pred             HH--CCC-CCEEECC
T ss_conf             98--499-8273258


No 61 
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=87.57  E-value=0.82  Score=24.69  Aligned_cols=55  Identities=25%  Similarity=0.352  Sum_probs=38.6

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             399889994882578999999999985189962885222234772221146335659999999999999877
Q gi|254780227|r  137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNER  208 (426)
Q Consensus       137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A  208 (426)
                      ...|.++++||||++..+++...     ..++||+||=-         . ++||-|-..  .+.++.+....
T Consensus        54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin~---------G-~lGFLt~~~--~~~~~~~~~~~  108 (281)
T COG0061          54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGINL---------G-HLGFLTDFE--PDELEKALDAL  108 (281)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHC-----CCCCCEEEEEC---------C-CCCCCCCCC--HHHHHHHHHHH
T ss_conf             77649999899689999999745-----56997899988---------9-830036768--78999999998


No 62 
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=87.50  E-value=2.2  Score=21.99  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             45699999999863998899948825789999999999851899628852222347722
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII  182 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~  182 (426)
                      .++.+++.+.++..+.|.++.+||.-....+...+.     ..++|+|.||-+-.||=+
T Consensus        74 ~~~i~~l~~~~~~~~~d~vi~~GgG~~~D~~k~~a~-----~~~~p~i~vpT~as~da~  127 (351)
T PRK00843         74 MEEVEKVEEKARDSGAGFLIGVGGGSSIDVAKLAST-----RLGIPFISVPTAASHDGI  127 (351)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH-----HCCCCEEEECCCCCCCCC
T ss_conf             999999999998459998999565168489999999-----829998995272103766


No 63 
>pfam02569 Pantoate_ligase Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyses the formation of pantothenate from pantoate and alanine.
Probab=87.45  E-value=0.97  Score=24.23  Aligned_cols=17  Identities=29%  Similarity=0.358  Sum_probs=9.0

Q ss_pred             HHHHHHHHHCCCCEEEE
Q ss_conf             99999998639988999
Q gi|254780227|r  128 EVSAHHLMQSGVTILHT  144 (426)
Q Consensus       128 ~~~~~~l~~~~Id~Li~  144 (426)
                      +.=++-|++.+.|.+++
T Consensus        76 ~~D~~ll~~~~vD~vF~   92 (280)
T pfam02569        76 ERDLALLEKEGVDIVFA   92 (280)
T ss_pred             HHHHHHHHHCCCCEEEC
T ss_conf             99999999869989977


No 64 
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro: IPR010187   This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity acting on X-H and Y-H to form an X-Y bond with a disulfide as acceptor, 0030700 glycine reductase complex.
Probab=86.85  E-value=0.2  Score=28.63  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC-CHH--HCCCCCCCEECC-CCCHHHHHHHH-HCCCCC
Q ss_conf             8763379998368775148999999999999856997899983-836--601079913046-26988887464-078740
Q gi|254780227|r   26 DMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYR-FGY--QGLLLDDKITIT-EDMRQNAEQLL-SYGGSP  100 (426)
Q Consensus        26 ~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~-~G~--~GL~~~~~~~l~-~l~~~~v~~~~-~~GGt~  100 (426)
                      +|=+|.+=|+..+--|.||--.+.++.+.|.++-.|-++.--. +||  +|.-.+.+.+=. +-..+.|..+. .+-|-.
T Consensus       122 ~~fkK~~YV~~~~~~Aa~MR~~l~A~AK~A~K~~~GE~Ig~~~EeGy~~RG~R~~~f~ed~kp~s~R~V~ML~KKL~GEE  201 (433)
T TIGR01918       122 DMFKKDVYVMITGDSAAGMRKDLPALAKFANKLAKGEEIGSPDEEGYFERGVRVNAFREDRKPGSERAVDMLVKKLKGEE  201 (433)
T ss_pred             CEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             15653588970774033565545889999988643565588654672226821012001376257899999874306862


Q ss_pred             CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             03367888653011101234567456999999998639988999488
Q gi|254780227|r  101 IGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGG  147 (426)
Q Consensus       101 LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGG  147 (426)
                      +.|----|.            .+.-...+.+.+|.|-.| +++.-||
T Consensus       202 F~TE~P~P~------------~D~V~~~~ai~d~sKA~I-A~VT~GG  235 (433)
T TIGR01918       202 FQTEYPMPV------------FDRVEPAAAIKDLSKAKI-AVVTSGG  235 (433)
T ss_pred             EECCCCCCC------------CCCCCCCCCHHHHCCCEE-EEEECCC
T ss_conf             002688873------------362013630222023328-9984075


No 65 
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=86.55  E-value=2.4  Score=21.67  Aligned_cols=38  Identities=11%  Similarity=-0.011  Sum_probs=24.5

Q ss_pred             HHHHHCCCCEEEEEECCC-CCCHHHHHHHHHCCCCCCCH
Q ss_conf             877516661699997698-74289999874014332310
Q gi|254780227|r  206 NERSATPRSLIIHEVMGR-NCGWLTAYSAHCYLNMIQDR  243 (426)
Q Consensus       206 ~~A~s~~~~~~iVEvMGR-~aG~LAl~~ala~ga~~~~i  243 (426)
                      ....+..+++.+|=|||- |.||++|...-...++.++.
T Consensus        14 ~~~r~~g~~Ig~VPTMGaLH~GHlsLI~~A~~~~d~vvV   52 (283)
T PRK00380         14 RALRREGKRIGFVPTMGNLHEGHLSLVREARAEADVVVV   52 (283)
T ss_pred             HHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEEE
T ss_conf             999971993999858722758999999999974992999


No 66 
>cd00560 PanC PanC  Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine.  PanC  belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=85.74  E-value=2.5  Score=21.54  Aligned_cols=29  Identities=21%  Similarity=0.091  Sum_probs=12.9

Q ss_pred             CCCEEEEEECCC-CCCHHHHHHHHHCCCCC
Q ss_conf             661699997698-74289999874014332
Q gi|254780227|r  212 PRSLIIHEVMGR-NCGWLTAYSAHCYLNMI  240 (426)
Q Consensus       212 ~~~~~iVEvMGR-~aG~LAl~~ala~ga~~  240 (426)
                      .+++.||=|||- |.||++|...-...++.
T Consensus        21 ~~~ig~VPTMGaLH~GHlsLi~~A~~~~d~   50 (276)
T cd00560          21 GKSIGFVPTMGALHEGHLSLIKRAKKENDK   50 (276)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             990999738622658999999999985992


No 67 
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=84.85  E-value=2.9  Score=21.13  Aligned_cols=125  Identities=15%  Similarity=0.099  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHH--HHHHHHHHHHH
Q ss_conf             6999999998639988999488257899999999998518996288522223477222114633565--99999999999
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALT--AAQVSACFFDN  203 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdT--A~~~~a~~i~~  203 (426)
                      .-...++.|.++++|++|+.+-..+-.....+.    +  .++|+|.+-...+++-.   .++++|-  |..   .+++.
T Consensus        43 ~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~----~--~~iP~V~~~~~~~~~~~---~~V~~Dn~~~~~---~~~~~  110 (268)
T cd06273          43 REYAQARKLLERGVDGLALIGLDHSPALLDLLA----R--RGVPYVATWNYSPDSPY---PCVGFDNREAGR---LAARH  110 (268)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH----H--CCCCEEEECCCCCCCCC---CEEEECHHHHHH---HHHHH
T ss_conf             999999999965999999918999989999999----7--59989998465788999---789967799999---99999


Q ss_pred             HHHHHHHCCCCEEEEEEC--------CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             998775166616999976--------987428999987401433231011111110001457652328786559899999
Q gi|254780227|r  204 ISNERSATPRSLIIHEVM--------GRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIE  275 (426)
Q Consensus       204 l~~~A~s~~~~~~iVEvM--------GR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~  275 (426)
                      +. + ..+ +++.++---        -|..||.......                    +-......+.+..++.+.-.+
T Consensus       111 L~-~-~G~-~~i~~i~~~~~~~~~~~~R~~gf~~al~~~--------------------~~~~~~~~~~~~~~~~~~~~~  167 (268)
T cd06273         111 LI-A-LGH-RRIAMIFGPTQGNDRARARRAGVRAALAEA--------------------GLELPELWQVEAPYSIADGRA  167 (268)
T ss_pred             HH-H-CCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHH--------------------CCCCCHHHEEECCCCHHHHHH
T ss_conf             98-7-298-747999468777778999999999999980--------------------999871420315789899999


Q ss_pred             HHHHHHHCCC
Q ss_conf             9999850289
Q gi|254780227|r  276 RLSKVMEKKG  285 (426)
Q Consensus       276 ~i~~~~~~~~  285 (426)
                      .+++.+....
T Consensus       168 ~~~~~l~~~~  177 (268)
T cd06273         168 ALRQLLEQPP  177 (268)
T ss_pred             HHHHHHHCCC
T ss_conf             9999984799


No 68 
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain  is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=84.12  E-value=1.4  Score=23.23  Aligned_cols=49  Identities=20%  Similarity=0.073  Sum_probs=33.5

Q ss_pred             HHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             9863998899948825789999999999851899628852222347722
Q gi|254780227|r  134 LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII  182 (426)
Q Consensus       134 l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~  182 (426)
                      .+..+-+.++++|||||..-+..--.........+++--||.=-=||+.
T Consensus        45 ~~~~~~~~vvv~GGDGTv~evlngl~~~~~~~~~~plgiIP~GTGNdfa   93 (124)
T smart00046       45 RDLPKFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGTGNDLA   93 (124)
T ss_pred             HCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHH
T ss_conf             5245356699953775199999999854355789878981686778999


No 69 
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=83.82  E-value=3.2  Score=20.88  Aligned_cols=37  Identities=14%  Similarity=0.022  Sum_probs=25.8

Q ss_pred             HHHHCCCCEEEEEECCC-CCCHHHHHHHHHCCCCCCCH
Q ss_conf             77516661699997698-74289999874014332310
Q gi|254780227|r  207 ERSATPRSLIIHEVMGR-NCGWLTAYSAHCYLNMIQDR  243 (426)
Q Consensus       207 ~A~s~~~~~~iVEvMGR-~aG~LAl~~ala~ga~~~~i  243 (426)
                      ..+.+.+++.||-+||- |.||++|.-.--..+|.++.
T Consensus        16 ~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVV   53 (285)
T COG0414          16 ALRKEGKRVGLVPTMGNLHEGHLSLVRRAKKENDVVVV   53 (285)
T ss_pred             HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             99971987999827742116799999998640993999


No 70 
>pfam07355 GRDB Glycine/sarcosine/betaine reductase selenoprotein B (GRDB). This family represents a conserved region approximately 350 residues long within the selenoprotein B component of the bacterial glycine, sarcosine and betaine reductase complexes.
Probab=83.53  E-value=0.36  Score=26.99  Aligned_cols=50  Identities=12%  Similarity=0.070  Sum_probs=26.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHH--H-HHHHHHHHHCCCCCEEEE
Q ss_conf             67456999999998639988999488257899--9-999999985189962885
Q gi|254780227|r  122 KDENPLEVSAHHLMQSGVTILHTIGGDDTNTT--A-CDLLRYLKEKNYNITVVG  172 (426)
Q Consensus       122 ~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~--a-~~L~e~~~~~~~~i~vig  172 (426)
                      ..++..+.+++.+++++-|.+|.==....-+.  | -.+.++.+ ..++||+|-
T Consensus        64 n~dea~~~il~mv~~~~pDlfiAGPAFnAGRYGvACG~i~kaV~-e~l~IP~vT  116 (349)
T pfam07355        64 NIEEAVAEILEMLKEEKPDLFIAGPAFNAGRYGVACGTIAKAVK-EELGIPAVT  116 (349)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHH-HHHCCCEEE
T ss_conf             99999999999998429998987663256425888999999999-986996386


No 71 
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=82.33  E-value=3.7  Score=20.47  Aligned_cols=70  Identities=20%  Similarity=0.175  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHH-HHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCCCCHHH-HHHHHHHHH
Q ss_conf             56999999998639988999488257899-9999999985189962-88522223477222114633565-999999999
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTT-ACDLLRYLKEKNYNIT-VVGLPKTIDNDIIPIHQSLGALT-AAQVSACFF  201 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~-vigiPKTIDNDi~~td~tiGfdT-A~~~~a~~i  201 (426)
                      .+...+++.+...+.|.+++.|||||..- ++-|++.      +.+ +--||.===||+.   .++|... ....+.+.+
T Consensus        45 g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~------~~~~LgilP~GT~NdfA---r~Lgip~~~~~~Al~~i  115 (301)
T COG1597          45 GDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGT------DDPPLGILPGGTANDFA---RALGIPLDDIEAALELI  115 (301)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCC------CCCCEEEECCCCHHHHH---HHCCCCCHHHHHHHHHH
T ss_conf             2299999998645898899963488799999887337------99817993486577889---98599945499999998


Q ss_pred             HH
Q ss_conf             99
Q gi|254780227|r  202 DN  203 (426)
Q Consensus       202 ~~  203 (426)
                      ..
T Consensus       116 ~~  117 (301)
T COG1597         116 KS  117 (301)
T ss_pred             HC
T ss_conf             63


No 72 
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.55  E-value=4.3  Score=20.07  Aligned_cols=81  Identities=11%  Similarity=0.009  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC-CCCHHHHHHHHHHHHHH
Q ss_conf             56999999998639988999488257899999999998518996288522223477222114-63356599999999999
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ-SLGALTAAQVSACFFDN  203 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~-tiGfdTA~~~~a~~i~~  203 (426)
                      +.....++.+.++++|++|+++..-+-.....+.+      .++|+|.+    |+++++.+. ++++|-. ....++++.
T Consensus        42 ~~e~~~i~~l~~~~vdGiIl~~~~~~~~~~~~~~~------~~~PvV~i----~~~~~~~~~~~V~~Dn~-~~~~~~~~~  110 (269)
T cd06293          42 ERELTYLRWLDTNHVDGLIFVTNRPDDGALAKLIN------SYGNIVLV----DEDVPGAKVPKVFCDNE-QGGRLATRH  110 (269)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEE----ECCCCCCCCCEEEECHH-HHHHHHHHH
T ss_conf             99999999998469999998068899799999996------59999999----57788899988997679-999999999


Q ss_pred             HHHHHHHCCCCEEEEE
Q ss_conf             9987751666169999
Q gi|254780227|r  204 ISNERSATPRSLIIHE  219 (426)
Q Consensus       204 l~~~A~s~~~~~~iVE  219 (426)
                      +. + .. |+++.++-
T Consensus       111 L~-~-~G-~~~I~~i~  123 (269)
T cd06293         111 LA-R-AG-HRRIAFVG  123 (269)
T ss_pred             HH-H-HC-CCEEEEEC
T ss_conf             99-8-29-98389954


No 73 
>TIGR00018 panC pantoate--beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis . Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway .; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process.
Probab=79.62  E-value=2.2  Score=21.90  Aligned_cols=71  Identities=14%  Similarity=0.086  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEECCC-CCCHHHHHHHHHCCCCCCCHH-----------HHHH--------HHHHC
Q ss_conf             999999999999877516661699997698-742899998740143323101-----------1111--------11000
Q gi|254780227|r  194 AQVSACFFDNISNERSATPRSLIIHEVMGR-NCGWLTAYSAHCYLNMIQDRN-----------YIDG--------FIFSP  253 (426)
Q Consensus       194 ~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR-~aG~LAl~~ala~ga~~~~i~-----------~~~~--------~~~~~  253 (426)
                      +....+.+.++..+. .-.+++.||=|||- |.||..|..-=...++.++.+           |+.+        -....
T Consensus         7 i~~L~~~~~q~~~eG-rfrk~vGfVPTMG~LH~GH~sL~~~a~~End~vvvSIFVNP~QFgp~EDl~~YPR~l~~D~~l~   85 (310)
T TIGR00018         7 IEELREYIKQLEREG-RFRKTVGFVPTMGALHEGHLSLIDRAVKENDLVVVSIFVNPLQFGPNEDLEAYPRDLEEDLALL   85 (310)
T ss_pred             HHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHCCCCHHHHHHHH
T ss_conf             789999999865168-5012331226731015678999999986688589999757878888754544579858999999


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             145765232878
Q gi|254780227|r  254 DFKGIDGVYLPE  265 (426)
Q Consensus       254 ~~~~~d~iliPE  265 (426)
                      +..++|+++.|.
T Consensus        86 E~lgVd~~FaP~   97 (310)
T TIGR00018        86 EKLGVDVVFAPK   97 (310)
T ss_pred             HHCCCCEEECCC
T ss_conf             838965885572


No 74 
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=76.76  E-value=4.6  Score=19.85  Aligned_cols=30  Identities=20%  Similarity=0.334  Sum_probs=20.7

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             999836877514899999999999985699789998
Q gi|254780227|r   32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYY   67 (426)
Q Consensus        32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~   67 (426)
                      ++++|+|   ||.-|++-++..+...   ..-|+-+
T Consensus        66 v~~~t~G---PG~tN~~tgl~~A~~d---~~Pvl~i   95 (535)
T TIGR03394        66 VAAVTYG---AGAFNMVNAIAGAYAE---KSPVVVI   95 (535)
T ss_pred             EEEECCC---HHHHHHHHHHHHHHHH---CCCEEEE
T ss_conf             9996657---7899999999999961---9986999


No 75 
>pfam00781 DAGK_cat Diacylglycerol kinase catalytic domain. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The catalytic domain is assumed from the finding of bacterial homologues. YegS is the Escherichia coli protein in this family whose crystal structure reveals an active site in the inter-domain cleft formed by four conserved sequence motifs, revealing a novel metal-binding site. The residues of this site are conserved across the family.
Probab=76.31  E-value=5.7  Score=19.27  Aligned_cols=52  Identities=21%  Similarity=0.213  Sum_probs=35.0

Q ss_pred             HCCCCEEEEECCHHHHHHHH-HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf             63998899948825789999-9999998518996288522223477222114633565
Q gi|254780227|r  136 QSGVTILHTIGGDDTNTTAC-DLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALT  192 (426)
Q Consensus       136 ~~~Id~Li~IGGdgS~~~a~-~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdT  192 (426)
                      +...|.++++|||||+.-+. -|.+.  ......++--||.=--||+.   .++|...
T Consensus        52 ~~~~d~vv~~GGDGTv~evvngl~~~--~~~~~~plgiIP~GTgNdfa---~~lgip~  104 (127)
T pfam00781        52 GDFKDLVVVAGGDGTVNEVLNGLAGR--EDRLKPPLGIIPLGTGNDFA---RALGIPG  104 (127)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHC--CCCCCCCEEEECCCCHHHHH---HHCCCCC
T ss_conf             35888899988975799999999746--88778978992487675899---9829999


No 76 
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.08  E-value=5.8  Score=19.23  Aligned_cols=129  Identities=14%  Similarity=0.030  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             56999999998639988999488257899999999998518996288522223477222114633565999999999999
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNI  204 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l  204 (426)
                      +..+.+.+.+..+.+|++|+++...+-.....|.    +  .++|+|.+=...++ ... ..+++.|- ..-..++++.+
T Consensus        47 ~~~~~~~~~l~~~~vDGiIi~~~~~~~~~~~~l~----~--~~iP~V~i~r~~~~-~~~-~~~V~~Dn-~~~~~~a~~~L  117 (270)
T cd06294          47 ELLEEVKKMIQQKRVDGFILLYSREDDPIIDYLK----E--EKFPFVVIGKPEDD-KEN-ITYVDNDN-IQAGYDATEYL  117 (270)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH----H--CCCCEEEECCCCCC-CCC-CEEEECCH-HHHHHHHHHHH
T ss_conf             9999999999827998899957989849999999----7--69999998775688-899-84993777-99999999999


Q ss_pred             HHHHHHCCCCEEEEEEC-C------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             98775166616999976-9------8742899998740143323101111111000145765232878655989999999
Q gi|254780227|r  205 SNERSATPRSLIIHEVM-G------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERL  277 (426)
Q Consensus       205 ~~~A~s~~~~~~iVEvM-G------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i  277 (426)
                      ..  .. |+++.++--. .      |..||..+...                    .+..++..++++..++.+.-.+.+
T Consensus       118 ~~--~G-hr~I~~i~~~~~~~~~~~R~~Gf~~al~~--------------------~g~~~~~~~~~~~~~~~~~~~~~~  174 (270)
T cd06294         118 IK--LG-HKKIAFVGGDLDLEVTQDRLQGYKQALED--------------------HGIPDRNEVIISLDFSEEGGYKAL  174 (270)
T ss_pred             HH--CC-CCEEEEECCCCCCHHHHHHHHHHHHHHHH--------------------CCCCCCCCEEECCCCCHHHHHHHH
T ss_conf             97--69-95699981899865899999999999998--------------------699977333313776678899999


Q ss_pred             HHHHHCCC
Q ss_conf             99850289
Q gi|254780227|r  278 SKVMEKKG  285 (426)
Q Consensus       278 ~~~~~~~~  285 (426)
                      ++.++...
T Consensus       175 ~~ll~~~~  182 (270)
T cd06294         175 KKLLEQHP  182 (270)
T ss_pred             HHHHHCCC
T ss_conf             99984699


No 77 
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1.  The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=75.52  E-value=3.6  Score=20.54  Aligned_cols=63  Identities=13%  Similarity=0.136  Sum_probs=34.6

Q ss_pred             HHHHHHCCCCEEEEECCHHHHHHHH----------------HHHHHHHHCCCCCEEEEECCC-CCCCCC-CCCCCCCHHH
Q ss_conf             9999863998899948825789999----------------999999851899628852222-347722-2114633565
Q gi|254780227|r  131 AHHLMQSGVTILHTIGGDDTNTTAC----------------DLLRYLKEKNYNITVVGLPKT-IDNDII-PIHQSLGALT  192 (426)
Q Consensus       131 ~~~l~~~~Id~Li~IGGdgS~~~a~----------------~L~e~~~~~~~~i~vigiPKT-IDNDi~-~td~tiGfdT  192 (426)
                      +..++..++|+||+=||.|..+...                ++-..+.+.+.+|-.++|--. +-.=++ +...|+|.|.
T Consensus        75 l~~~~~~d~DaLiiPGGfGaAKNLs~fA~~g~~~~v~~~V~~~i~~f~~a~KPiG~iCIAP~l~a~vl~~~~~~TiG~D~  154 (213)
T cd03133          75 LAKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILGEGVEVTIGNDA  154 (213)
T ss_pred             HHHCCHHHCCEEEECCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCEEECCCCH
T ss_conf             45699867898997885145553100210588756989999999999984999999757899999981898289668987


Q ss_pred             H
Q ss_conf             9
Q gi|254780227|r  193 A  193 (426)
Q Consensus       193 A  193 (426)
                      .
T Consensus       155 ~  155 (213)
T cd03133         155 G  155 (213)
T ss_pred             H
T ss_conf             8


No 78 
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=75.15  E-value=6.1  Score=19.08  Aligned_cols=50  Identities=22%  Similarity=0.317  Sum_probs=33.0

Q ss_pred             HHHHHHHHH--HCCCCEEEEECCHHHHHHHHHHHHHHHH-------------C----CCCCEEEEECCC
Q ss_conf             999999998--6399889994882578999999999985-------------1----899628852222
Q gi|254780227|r  127 LEVSAHHLM--QSGVTILHTIGGDDTNTTACDLLRYLKE-------------K----NYNITVVGLPKT  176 (426)
Q Consensus       127 ~~~~~~~l~--~~~Id~Li~IGGdgS~~~a~~L~e~~~~-------------~----~~~i~vigiPKT  176 (426)
                      .+..++.++  +.+.|.+|.+||--++..|..++-....             +    ...+|+|.||-|
T Consensus        67 v~~~~~~~~~~e~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~lP~iaIPTT  135 (355)
T TIGR03405        67 LDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTT  135 (355)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEECCC
T ss_conf             999999998423699889980785187889999999718975888988733776775578998984389


No 79 
>PRK06179 short chain dehydrogenase; Provisional
Probab=74.48  E-value=4.7  Score=19.80  Aligned_cols=30  Identities=20%  Similarity=0.137  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             899999999985028953899504211111
Q gi|254780227|r  270 LEVEIERLSKVMEKKGSVAIFVSEGACRDV  299 (426)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~vIVvsEG~~~~~  299 (426)
                      +..+.+.+...+..++--|..|+.|.....
T Consensus       152 l~~~t~sla~El~~~gIrVn~v~PG~v~T~  181 (270)
T PRK06179        152 VEGYSESLDHEVRQFGIRVSLVEPAYTRTS  181 (270)
T ss_pred             HHHHHHHHHHHHHHHCCEEEEEEECCCCCC
T ss_conf             999999999985012968999984789171


No 80 
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=74.35  E-value=6.4  Score=18.95  Aligned_cols=69  Identities=22%  Similarity=0.253  Sum_probs=49.1

Q ss_pred             CCHHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             6745699999999863998---89994882578999999999985189962885222234772221146335659999
Q gi|254780227|r  122 KDENPLEVSAHHLMQSGVT---ILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQV  196 (426)
Q Consensus       122 ~~~~~~~~~~~~l~~~~Id---~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~  196 (426)
                      ++-+.++++.+.+.+++++   .++.+||.=..+-|--.|..+   .-+|+.|.||-|.-   .-+|.|+|--||+|+
T Consensus        74 K~l~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~DlaGF~As~y---~RGi~~i~iPTTLL---a~vDssiGgKtgvN~  145 (360)
T PRK00002         74 KSLETLERIYDALLEAGLDRSDTLIALGGGVVGDLAGFAAATY---MRGIRFIQVPTTLL---AQVDSSVGGKTGINH  145 (360)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHH---HCCCCEEECCCHHH---HHHHCCCCCCCCCCC
T ss_conf             7798999999999976999887315306637658899999998---47997797460089---998144564420569


No 81 
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed
Probab=74.20  E-value=6.4  Score=18.93  Aligned_cols=72  Identities=13%  Similarity=0.120  Sum_probs=43.0

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             87633799983687751489999999999998569978999838366010799130462698888746407874003367
Q gi|254780227|r   26 DMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSR  105 (426)
Q Consensus        26 ~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR  105 (426)
                      +|++|||+|.-|||.    -+++.+...  .  ..|++|+|+.      ++.         |+...   ..     +.|.
T Consensus         1 ~~sk~rV~VamSGGV----DSsVaA~LL--~--~~Gy~V~Gv~------m~~---------w~~~~---~~-----~~C~   49 (355)
T PRK00143          1 DPSKKRVVVGMSGGV----DSSVAAALL--K--EQGYDVIGLF------MKL---------WDDDD---GS-----GGCC   49 (355)
T ss_pred             CCCCCEEEEEECCCH----HHHHHHHHH--H--HCCCCEEEEE------EEC---------CCCCC---CC-----CCCC
T ss_conf             998888999916789----999999999--9--7799589999------988---------76887---77-----8998


Q ss_pred             CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8886530111012345674569999999986399889994
Q gi|254780227|r  106 VKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTI  145 (426)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~I  145 (426)
                                       .+++++.+...+++++|...++-
T Consensus        50 -----------------~~~d~~dA~~va~~LgIp~~v~d   72 (355)
T PRK00143         50 -----------------AEEDIADARAVADKLGIPLYVVD   72 (355)
T ss_pred             -----------------CHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             -----------------57889999999998698579968


No 82 
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=74.08  E-value=6.5  Score=18.91  Aligned_cols=124  Identities=13%  Similarity=0.138  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999863998899948825789999999999851899628852222347722211-46335659999999999999
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH-QSLGALTAAQVSACFFDNIS  205 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td-~tiGfdTA~~~~a~~i~~l~  205 (426)
                      -...++.|.++++|++|+.+...+-.....+    .  ..++|+|.+    |...+..+ .+++.|- ..-+..+++.+.
T Consensus        44 e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~----~--~~~iPvV~i----dr~~~~~~~~~V~~Dn-~~~~~~a~~~L~  112 (264)
T cd06274          44 ERETVETLIARQVDALIVAGSLPPDDPYYLC----Q--KAGLPVVAL----DRPGDPSRFPSVVSDN-RDGAAELTRELL  112 (264)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHHHHH----H--HCCCCEEEE----ECCCCCCCCCEEEECH-HHHHHHHHHHHH
T ss_conf             9999999996699879976788987999999----9--759988998----5058989997899766-999999999999


Q ss_pred             HHHHHCCCCEEEEE-EC------CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             87751666169999-76------987428999987401433231011111110001457652328786559899999999
Q gi|254780227|r  206 NERSATPRSLIIHE-VM------GRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLS  278 (426)
Q Consensus       206 ~~A~s~~~~~~iVE-vM------GR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~  278 (426)
                      .  .. |+++.++- ..      -|..||..+.....                    ...+..++.+..++.+.-.+.+.
T Consensus       113 ~--~G-hr~I~~i~~~~~~~~~~~R~~Gf~~al~~~g--------------------~~~~~~~i~~~~~~~~~g~~~~~  169 (264)
T cd06274         113 A--AP-PEEVLFLGGLPELSPSRERLAGFRQALADAG--------------------LPVQPDWIYAEGYSPESGYQLMA  169 (264)
T ss_pred             H--CC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCC--------------------CCCCCEEEEECCCCHHHHHHHHH
T ss_conf             8--59-9669997689877309999999999999779--------------------98774079826888789999999


Q ss_pred             HHHHCC
Q ss_conf             985028
Q gi|254780227|r  279 KVMEKK  284 (426)
Q Consensus       279 ~~~~~~  284 (426)
                      +.+++.
T Consensus       170 ~~l~~~  175 (264)
T cd06274         170 ELLARL  175 (264)
T ss_pred             HHHHHC
T ss_conf             999865


No 83 
>TIGR01481 ccpA catabolite control protein A; InterPro: IPR006377   Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [e.g. acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription.
Probab=72.54  E-value=7  Score=18.67  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=59.0

Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999998639988999488257899999999998518996288522223477222114633565999999999999987
Q gi|254780227|r  128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNE  207 (426)
Q Consensus       128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~  207 (426)
                      -.++.||-...+|++|+.||    ....+|.|+|..-  ..||| +-.|.|-|=...--+|=|--|.+.++.   ++-  
T Consensus       106 ~~v~NTLl~KQVDGiIfmG~----~Ite~~re~F~rs--~~PVV-LAGt~D~~~~~pSVNIDy~~A~kEav~---~l~--  173 (332)
T TIGR01481       106 VQVLNTLLSKQVDGIIFMGG----EITEKLREEFSRS--PVPVV-LAGTVDKENELPSVNIDYKQATKEAVK---ELI--  173 (332)
T ss_pred             HHHHHHHHHHHCCEEEECCH----HHHHHHHHHHHCC--CCCEE-EECCCCCCCCCCCCCCCHHHHHHHHHH---HHH--
T ss_conf             67666533101011344430----2108999997128--99889-953548654677310167899999999---986--


Q ss_pred             HHHCCCCEEEEEECCCC
Q ss_conf             75166616999976987
Q gi|254780227|r  208 RSATPRSLIIHEVMGRN  224 (426)
Q Consensus       208 A~s~~~~~~iVEvMGR~  224 (426)
                      +..| +++-||  -|-+
T Consensus       174 ~~Gh-K~iAfv--~G~L  187 (332)
T TIGR01481       174 AKGH-KKIAFV--SGSL  187 (332)
T ss_pred             HCCC-CEEEEE--ECCC
T ss_conf             3358-268887--3675


No 84 
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=72.31  E-value=7.1  Score=18.64  Aligned_cols=96  Identities=18%  Similarity=0.074  Sum_probs=62.6

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCE------ECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             998368775148999999999999856997899983836601079913------04626988887464078740033678
Q gi|254780227|r   33 AFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKI------TITEDMRQNAEQLLSYGGSPIGNSRV  106 (426)
Q Consensus        33 ~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~------~l~~l~~~~v~~~~~~GGt~LgtsR~  106 (426)
                      +++.+||+.|-....     +.  ...+..-++++-+|..-|++....      +++.++.+..+.+...+-.++...  
T Consensus         1 ~lIi~nG~~~~~~~~-----~~--~~~~~~~iIaaDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p--   71 (208)
T cd07995           1 ALILLGGPLPDSPLL-----LK--LWKKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFP--   71 (208)
T ss_pred             CEEEECCCCCCHHHH-----HH--HHHHCCEEEEECCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEECC--
T ss_conf             999989999973899-----99--986399899981189999986998789985543489899999885398389997--


Q ss_pred             CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             88653011101234567456999999998639988999488257
Q gi|254780227|r  107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT  150 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS  150 (426)
                                   ..++.-+++++++-+.+++.+.++++|+.|.
T Consensus        72 -------------~~kD~TD~ekAl~~~~~~~~~~i~i~Ga~Gg  102 (208)
T cd07995          72 -------------DEKDFTDFEKALKLALERGADEIVILGATGG  102 (208)
T ss_pred             -------------CCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             -------------1036407999999999779988999937899


No 85 
>KOG4180 consensus
Probab=71.95  E-value=3  Score=21.08  Aligned_cols=74  Identities=20%  Similarity=0.328  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC-----------------CEEEEE
Q ss_conf             626988887464078740033678886530111012345674569999999986399-----------------889994
Q gi|254780227|r   83 TEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGV-----------------TILHTI  145 (426)
Q Consensus        83 ~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~I-----------------d~Li~I  145 (426)
                      ..++.+.+..++..-||-.|.--.+-.            ...+.+..+.+-|.+.+|                 |.+|-.
T Consensus        45 ~~lspdql~q~L~srgtdv~~ll~~hK------------vhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~Visv  112 (395)
T KOG4180          45 SGLSPDQLLQYLESRGTDVGRLLSKHK------------VHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISV  112 (395)
T ss_pred             CCCCHHHHHHHHHHCCCHHHHHHHHHH------------HHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHEEEEE
T ss_conf             589989999999862851888888767------------78889999999986178630353453326757623179971


Q ss_pred             CCHHHHHHHHH-HHHHHHHCCCCCEEEEEC
Q ss_conf             88257899999-999998518996288522
Q gi|254780227|r  146 GGDDTNTTACD-LLRYLKEKNYNITVVGLP  174 (426)
Q Consensus       146 GGdgS~~~a~~-L~e~~~~~~~~i~vigiP  174 (426)
                      |||||+--|+- +.+      -..|||||-
T Consensus       113 GGDGTfL~Aasrv~~------~~~PViGvN  136 (395)
T KOG4180         113 GGDGTFLLAASRVID------DSKPVIGVN  136 (395)
T ss_pred             CCCCCEEEHHHHHHC------CCCCEEEEC
T ss_conf             686313210012221------688445534


No 86 
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=71.08  E-value=4.3  Score=20.03  Aligned_cols=101  Identities=19%  Similarity=0.195  Sum_probs=50.0

Q ss_pred             EEEEEEECCC---CCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             3799983687---7514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r   30 HKVAFLTAGG---IAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV  106 (426)
Q Consensus        30 krI~IltsGG---~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~  106 (426)
                      |||||+.||=   |=.=++-++..+.. +.+  .|.++.-|---..-.                .-+.+.-|..-+.+|-
T Consensus         2 kkvaViLSGCGv~DGSEIhEavltlla-L~r--~ga~~~cfAPd~~Q~----------------hvvnH~tge~~~e~RN   62 (217)
T PRK11780          2 KKIAVILSGCGVYDGSEIHEAVLTLLA-LDR--AGAEAQCFAPDIPQL----------------HVINHLTGEEMAETRN   62 (217)
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHHH-HHH--CCCEEEEECCCCCCC----------------CCEECCCCCCCCHHHH
T ss_conf             618999607888774089999999999-986--798679976996520----------------1211258983732477


Q ss_pred             CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf             8865301110123456745699999999863998899948825789999999
Q gi|254780227|r  107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLL  158 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~  158 (426)
                      -+ .+...+.|+.+.        -+..++..++|+||+=||.|..+....++
T Consensus        63 VL-vESARIaRG~I~--------~l~~~~~~d~DaLI~PGGfGaAKNLs~fA  105 (217)
T PRK11780         63 VL-VESARIARGEIK--------DLAEADAEDFDALIVPGGFGAAKNLSNFA  105 (217)
T ss_pred             HH-HHHHHHHCCCCC--------CHHHCCHHHCCEEEECCCCHHHHCCCCHH
T ss_conf             89-999887615866--------74569975678799678620443110165


No 87 
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily.  In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=70.96  E-value=7.6  Score=18.45  Aligned_cols=120  Identities=11%  Similarity=0.093  Sum_probs=65.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             99983687751489999999999998569978999838366010799130462698888746407874003367888653
Q gi|254780227|r   32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNF  111 (426)
Q Consensus        32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~  111 (426)
                      ||++...-.-|=.+..+.++-+.++.  .|+++.-...      ++                                  
T Consensus         2 Igvi~p~~~~~f~~~~~~gi~~~a~~--~gy~~~i~~~------~~----------------------------------   39 (264)
T cd06267           2 IGVIVPDISNPFFAELLRGIEEAARE--AGYSVLLCNS------DE----------------------------------   39 (264)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHH--CCCEEEEEEC------CC----------------------------------
T ss_conf             89996899769999999999999998--6998999978------99----------------------------------


Q ss_pred             CHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCH
Q ss_conf             01110123456745699999999863998899948825789999999999851899628852222347-72221146335
Q gi|254780227|r  112 SDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDN-DIIPIHQSLGA  190 (426)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDN-Di~~td~tiGf  190 (426)
                                 +.+.....++.+...++|++|+.+.+.+-.....+.+      .++|+|.+-...++ +++    ++++
T Consensus        40 -----------~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~~~~~------~~iPvV~~~~~~~~~~~~----~V~~   98 (264)
T cd06267          40 -----------DPEKEREALELLLSRRVDGIILAPSRLDDELLEELAA------LGIPVVLVDRPLDGLGVD----SVGI   98 (264)
T ss_pred             -----------CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH------CCCCEEEEEECCCCCCCC----EEEE
T ss_conf             -----------9899999999999579999996788899899999998------699889996047999987----9997


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             6599999999999998775166616999
Q gi|254780227|r  191 LTAAQVSACFFDNISNERSATPRSLIIH  218 (426)
Q Consensus       191 dTA~~~~a~~i~~l~~~A~s~~~~~~iV  218 (426)
                      |-.- ...++++.+..  .. ++++.++
T Consensus        99 D~~~-a~~~a~~~L~~--~G-~~~i~~i  122 (264)
T cd06267          99 DNRA-GAYLAVEHLIE--LG-HRRIAFI  122 (264)
T ss_pred             CHHH-HHHHHHHHHHH--HC-CCCEEEE
T ss_conf             8799-99999999987--18-8856896


No 88 
>pfam00532 Peripla_BP_1 family. This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (pfam00356).
Probab=70.82  E-value=7.7  Score=18.43  Aligned_cols=174  Identities=11%  Similarity=0.064  Sum_probs=89.5

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
                      ..||++..-=.-|=...+++++-+.+..  .|++++-.                                   ++..   
T Consensus         2 ~TIGvivpdi~npff~~i~~gie~~a~~--~Gy~~ll~-----------------------------------~t~~---   41 (281)
T pfam00532         2 LKLGALVPQLDEPFFQDLVKGITKAAKD--HGFDVFLL-----------------------------------AVGD---   41 (281)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHH--CCCEEEEE-----------------------------------ECCC---
T ss_conf             5999997988618999999999999998--39989999-----------------------------------7999---


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG  189 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG  189 (426)
                                   +.+.....++.+.++++|++|+.+-..+......+.   +  ..++|+|.+=...+++...  .++.
T Consensus        42 -------------~~~~e~~~l~~l~~~~vDGiIi~~~~~~~~~~~~~~---~--~~~iPvV~~~~~~~~~~~~--~~V~  101 (281)
T pfam00532        42 -------------GEDTLTNAIDLLLASGADGIIITTPAPSGDDITAKA---E--GYGIPVIAADDAFDNPDGV--PCVM  101 (281)
T ss_pred             -------------CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH---H--HCCCCEEEEECCCCCCCCC--CEEE
T ss_conf             -------------989999999999965999899936889849999999---8--5799789992465788888--6899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             565999999999999987751666169999769-------8742899998740143323101111111000145765232
Q gi|254780227|r  190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMG-------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVY  262 (426)
Q Consensus       190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMG-------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~il  262 (426)
                      .|- ..-...+++.|..  ..|.+.++++...-       |..||..+....                    +...+..+
T Consensus       102 ~Dn-~~~~~~a~~~Li~--~Ghrr~i~~~~~~~~~~~~~~R~~Gf~~al~~~--------------------g~~~~~~~  158 (281)
T pfam00532       102 PDD-TQAGYESTQYLIA--EGHKRPIAVMAGPASALTARERVQGFMAALAAA--------------------GREVKIYH  158 (281)
T ss_pred             ECH-HHHHHHHHHHHHH--HCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHC--------------------CCCCCCEE
T ss_conf             667-9999999999998--389770477307876507899999999999975--------------------99998206


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             878655989999999998502895
Q gi|254780227|r  263 LPEMSFNLEVEIERLSKVMEKKGS  286 (426)
Q Consensus       263 iPE~~~~~~~~~~~i~~~~~~~~~  286 (426)
                      +++..++.+.-.+.+++.++....
T Consensus       159 ~~~~~~~~~~g~~~~~~ll~~~~~  182 (281)
T pfam00532       159 VATGDNDIPDAALAANAMLVSHPT  182 (281)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCC
T ss_conf             883688889999999999854999


No 89 
>pfam07905 PucR Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.
Probab=69.44  E-value=8.2  Score=18.24  Aligned_cols=96  Identities=19%  Similarity=0.266  Sum_probs=56.0

Q ss_pred             CCEEEEECCHHHCCCCC-CCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             97899983836601079-91304626988887464078740033678886530111012345674569999999986399
Q gi|254780227|r   61 KAELIYYRFGYQGLLLD-DKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGV  139 (426)
Q Consensus        61 ~~~v~G~~~G~~GL~~~-~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~I  139 (426)
                      +.+++   -|-.||-+. ..+.+.+  ..+...|.+ ||.++=|+=..+.            .+++.+...++.|.+.+.
T Consensus        11 ~~~lv---aG~~gL~r~V~~v~i~E--~pd~~~~l~-~gElvlTtg~~~~------------~~~~~~~~~i~~L~~~g~   72 (122)
T pfam07905        11 LAKVL---AGEEGLDRPVRWVHVSE--LPDISPWLR-GGELLLTTGYGLK------------DDPEALREFVRELAEAGA   72 (122)
T ss_pred             CCEEE---CCCCCCCCCEEEEEEEC--CCCHHHHCC-CCEEEEEECCCCC------------CCHHHHHHHHHHHHHCCC
T ss_conf             98997---17655799687889762--679889636-9859997255447------------999999999999997896


Q ss_pred             CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             8899948825789999999999851899628852222
Q gi|254780227|r  140 TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKT  176 (426)
Q Consensus       140 d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT  176 (426)
                      -+|++-=|..--..-..+-+++.+  +++|++-+|..
T Consensus        73 agL~i~~g~~~~~iP~~~i~~a~~--~~~Pli~iP~~  107 (122)
T pfam07905        73 AGLGIKTGRYIPEIPEELIAAANR--LGLPLIELPRE  107 (122)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHH--CCCCEEEECCC
T ss_conf             499994255546699999999997--49977994597


No 90 
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=68.89  E-value=8.4  Score=18.16  Aligned_cols=14  Identities=14%  Similarity=0.131  Sum_probs=8.8

Q ss_pred             EEEEECCHHHHHHH
Q ss_conf             89994882578999
Q gi|254780227|r  141 ILHTIGGDDTNTTA  154 (426)
Q Consensus       141 ~Li~IGGdgS~~~a  154 (426)
                      ..+++=|||-|.-.
T Consensus       149 rv~~~~GDgEldEg  162 (386)
T cd02017         149 KVWAFLGDGEMDEP  162 (386)
T ss_pred             EEEEEECCCCCCHH
T ss_conf             38999625211509


No 91 
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033    Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=68.34  E-value=8.7  Score=18.09  Aligned_cols=79  Identities=18%  Similarity=0.068  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHC---CCCEEEEECCHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             45699999999863---9988999488257899-9999999985189962885222234772221146335659999999
Q gi|254780227|r  124 ENPLEVSAHHLMQS---GVTILHTIGGDDTNTT-ACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSAC  199 (426)
Q Consensus       124 ~~~~~~~~~~l~~~---~Id~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~  199 (426)
                      ++++..+++.++++   |-|++|+.=|=|||.. |+.|+=.++  ..+.|||-+=.=|.-|-+-+|-.+=--.|++++++
T Consensus        65 PEyW~eiAe~vk~~~~dG~DG~VI~HGTDTM~YTaaALSFML~--~~~kPvv~tGaQrs~d~~~SDA~~Nl~~A~~~A~e  142 (347)
T TIGR00519        65 PEYWVEIAEAVKKEYDDGYDGVVITHGTDTMAYTAAALSFMLE--TLPKPVVFTGAQRSSDRPSSDAALNLLCAVRAATE  142 (347)
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             6257999999999851689839992378836899999999997--37997999837676766666466779999998516


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780227|r  200 FFDNI  204 (426)
Q Consensus       200 ~i~~l  204 (426)
                      .|..+
T Consensus       143 ~i~eV  147 (347)
T TIGR00519       143 EIKEV  147 (347)
T ss_pred             CCCEE
T ss_conf             89636


No 92 
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=68.26  E-value=8.7  Score=18.08  Aligned_cols=80  Identities=11%  Similarity=0.074  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999863998899948825789999999999851899628852222347722211463356599999999999998
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN  206 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~  206 (426)
                      -...++.+.++++|++|+..++.+......+   +.  ..++|+|.+-...+.+.    .++..|- .+-..++++.|..
T Consensus        44 e~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~---~~--~~~iPvV~~~r~~~~~~----~~V~~D~-~~~~~~a~~~L~~  113 (269)
T cd06281          44 ELEILRSFEQRRMDGIIIAPGDERDPELVDA---LA--SLDLPIVLLDRDMGGGA----DAVLFDH-AAGMRQAVEYLIS  113 (269)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCHHHHHH---HH--HCCCCEEEEECCCCCCC----CEEEECH-HHHHHHHHHHHHH
T ss_conf             9999999985799899976777799999999---98--47998899844689999----9899875-9999999999997


Q ss_pred             HHHHCCCCEEEEE
Q ss_conf             7751666169999
Q gi|254780227|r  207 ERSATPRSLIIHE  219 (426)
Q Consensus       207 ~A~s~~~~~~iVE  219 (426)
                        ..+ +++.++-
T Consensus       114 --~G~-~~I~~i~  123 (269)
T cd06281         114 --LGH-RRIALVG  123 (269)
T ss_pred             --CCC-CCEEEEE
T ss_conf             --599-8668980


No 93 
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=67.09  E-value=4.9  Score=19.66  Aligned_cols=124  Identities=14%  Similarity=0.018  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHCCCC-----EEEEECC---HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99999999863998-----8999488---257899999999998518996288522223477222114633565999999
Q gi|254780227|r  127 LEVSAHHLMQSGVT-----ILHTIGG---DDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSA  198 (426)
Q Consensus       127 ~~~~~~~l~~~~Id-----~Li~IGG---dgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a  198 (426)
                      -+.+.+++++++|.     .|--++=   .+|-.....+.+.+++++    ||           ++    .+++|++..-
T Consensus       105 p~ei~~tf~kLGIp~~e~k~Lagv~vda~~dS~~V~~~~~~~l~~~G----VI-----------f~----~~~~A~~~hp  165 (484)
T PRK11814        105 DPELLETFEKLGIPLREQKRLAGVAVDAVFDSVSVATTFKEKLAEAG----VI-----------FC----SISEAIQEHP  165 (484)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCC----EE-----------EE----CHHHHHHHHH
T ss_conf             89999999883886778775236524322052012355689998688----59-----------96----6999999989


Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf             999999987751666169999769874289999874014332310111111100014576523287865598999999--
Q gi|254780227|r  199 CFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIER--  276 (426)
Q Consensus       199 ~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~--  276 (426)
                      +.+..-.-++.....           --+.||++|+-++-..                    +|+|...-...++...  
T Consensus       166 eLVkkylg~~v~~~d-----------~kfaALn~A~~s~G~F--------------------vYVPkgV~v~~pL~~~f~  214 (484)
T PRK11814        166 ELVKKYLGSVVPVND-----------NFFAALNSAVFSDGSF--------------------VYIPKGVRCPMELSTYFR  214 (484)
T ss_pred             HHHHHHHHCCCCCCC-----------CHHHHHHHHHHCCCEE--------------------EEECCCEEECCEEEEEEE
T ss_conf             999999846568751-----------0889988998639769--------------------996698267536799999


Q ss_pred             HHH-HHHCCCCEEEEEECCCCCCCC
Q ss_conf             999-850289538995042111111
Q gi|254780227|r  277 LSK-VMEKKGSVAIFVSEGACRDVI  300 (426)
Q Consensus       277 i~~-~~~~~~~~vIVvsEG~~~~~~  300 (426)
                      +.. ......+.+||+-||+....+
T Consensus       215 i~~~~~~qf~htLIIaEegS~v~yi  239 (484)
T PRK11814        215 INAANTGQFERTLIIADEGSYVSYL  239 (484)
T ss_pred             ECCCCCCEEEEEEEEECCCCEEEEE
T ss_conf             8577654001579996278579999


No 94 
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=66.92  E-value=9.2  Score=17.91  Aligned_cols=68  Identities=13%  Similarity=0.214  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             45699999999863998---899948825789999999999851899628852222347722211463356599999
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVT---ILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVS  197 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id---~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~  197 (426)
                      ...++++.+.+.+.++|   .++.+||.=-...+--.+. .-  .-+|+.|-||-|.   +.-+|-|+|--|++|+-
T Consensus        94 ~~~~~~i~~~l~~~~~~R~~~viaiGGGvv~D~~GfaAs-~y--~RGi~~i~iPTTl---La~vDssvGgKtgvN~~  164 (390)
T PRK06203         94 PQLLEQLLAAINEAGIDRHSYVLAIGGGAVLDMVGYAAA-TA--HRGVRLIRIPTTV---LAQNDSGVGVKNGINAF  164 (390)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHH-HH--HCCCCEEECCCHH---HHHHHCCCCCCCEECCC
T ss_conf             999999999999759998975999768399789999999-98--6399852155469---88871356763125589


No 95 
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B; InterPro: IPR010186   Some anaerobic bacteria can conserve energy by a soluble substrate level phosphorylation system which reduces glycine to acetyl-phosphate . The exact mechanism by which this conversion occurs is not currently known, but the glycine reductase system includes three sequentially acting proteins known as protein A, protein B and protein C. Protein B, the substrate-specific component of this complex, is a selenoprotein thought to convert glycine to a protein-bound Se-carboxymethyl selenoether intermediate. This intermediate is then thought to be passed to protein A, another selenoprotein, which uses it to acetylate the final component of this system, protein C. Protein C subsequently phosphorylates this acetyl group, generating acetyl phosphate.   This entry represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this entry, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity acting on X-H and Y-H to form an X-Y bond with a disulfide as acceptor, 0030700 glycine reductase complex.
Probab=66.15  E-value=1.7  Score=22.65  Aligned_cols=42  Identities=14%  Similarity=0.174  Sum_probs=27.0

Q ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             487633799983687751489999999999998569978999
Q gi|254780227|r   25 KDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIY   66 (426)
Q Consensus        25 ~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G   66 (426)
                      -|+-+|.+=|+...--|.||--++-++.+.+.++-+|.++.-
T Consensus       121 ~d~~~k~vyv~~t~dsaaGmrk~lPa~akfa~k~akGeei~s  162 (431)
T TIGR01917       121 LDVYKKEVYVISTADSAAGMRKALPALAKFALKLAKGEEILS  162 (431)
T ss_pred             CCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             411100367862551222356545889999876514531368


No 96 
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=66.04  E-value=9.6  Score=17.80  Aligned_cols=99  Identities=10%  Similarity=0.081  Sum_probs=52.5

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             99983687751489999999999998569978999838366010799130462698888746407874003367888653
Q gi|254780227|r   32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNF  111 (426)
Q Consensus        32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~  111 (426)
                      ||++...=.-|=-..++.++-+.++..  |++++-+                                   .+..     
T Consensus         2 IGvivp~l~npff~~~~~gi~~~a~~~--Gy~~~i~-----------------------------------~s~~-----   39 (268)
T cd06323           2 IGLSVSTLNNPFFVTLKDGAQKEAKEL--GYELTVL-----------------------------------DAQN-----   39 (268)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEE-----------------------------------ECCC-----
T ss_conf             899988897999999999999999975--9989998-----------------------------------1999-----


Q ss_pred             CHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             011101234567456999999998639988999488--257899999999998518996288522223477222114633
Q gi|254780227|r  112 SDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGG--DDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG  189 (426)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGG--dgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG  189 (426)
                                 +.+...+.++.+...++|++++..-  +.+......+.      ..+||||.+=..++++.+  ..++|
T Consensus        40 -----------~~~~e~~~i~~l~~~~vdgiI~~p~~~~~~~~~i~~~~------~~~iPvV~id~~~~~~~~--~~~V~  100 (268)
T cd06323          40 -----------DAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAAN------EAGIPVFTIDREANGGEV--VSQIA  100 (268)
T ss_pred             -----------CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHH------HCCCCEEEECCCCCCCCC--CCEEE
T ss_conf             -----------99999999999996499989975654212469999999------769968996366678886--61898


Q ss_pred             HH
Q ss_conf             56
Q gi|254780227|r  190 AL  191 (426)
Q Consensus       190 fd  191 (426)
                      .|
T Consensus       101 ~d  102 (268)
T cd06323         101 SD  102 (268)
T ss_pred             EC
T ss_conf             53


No 97 
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.31  E-value=9.9  Score=17.71  Aligned_cols=128  Identities=10%  Similarity=0.060  Sum_probs=69.2

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r   31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN  110 (426)
Q Consensus        31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~  110 (426)
                      |||++..-=.-|=...+++|+-+.++.+..+..++..                                   .++.    
T Consensus         1 KIGvivp~i~npff~~~~~gie~~a~~~g~~~~v~~~-----------------------------------~~~~----   41 (271)
T cd06321           1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVV-----------------------------------SADY----   41 (271)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE-----------------------------------CCCC----
T ss_conf             9899948998989999999999999971997699980-----------------------------------7988----


Q ss_pred             CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCH
Q ss_conf             30111012345674569999999986399889994882578999999999985189962885222234772221146335
Q gi|254780227|r  111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGA  190 (426)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGf  190 (426)
                                  +.+.....++.+...++|++++.-.|..... ..+. .+.  ..+||||.+    |.+.++.+.++|.
T Consensus        42 ------------d~~~q~~~i~~li~~~vDgIii~~~~~~~~~-~~i~-~a~--~~gIpvV~~----d~~~~~~~~~V~~  101 (271)
T cd06321          42 ------------DLNKQVSQIDNFIAAKVDLILLNAVDSKGIA-PAVK-RAQ--AAGIVVVAV----DVAAEGADATVTT  101 (271)
T ss_pred             ------------CHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-HHHH-HHH--HCCCEEEEE----EECCCCCCCEEEE
T ss_conf             ------------9999999999999749988999347840359-9999-999--749918998----6058998728997


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             65999999999999987751666169999
Q gi|254780227|r  191 LTAAQVSACFFDNISNERSATPRSLIIHE  219 (426)
Q Consensus       191 dTA~~~~a~~i~~l~~~A~s~~~~~~iVE  219 (426)
                      |-.. ....+.+.+... ...++++.++.
T Consensus       102 dn~~-~g~~a~~~L~~~-~~~~~~i~~~~  128 (271)
T cd06321         102 DNVQ-AGEISCQYLADR-LGGKGNVAILN  128 (271)
T ss_pred             CHHH-HHHHHHHHHHHH-CCCCEEEEEEC
T ss_conf             6999-999999878875-28960799975


No 98 
>TIGR00250 TIGR00250 conserved hypothetical protein TIGR00250; InterPro: IPR005227   Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VIIcolicin E and RusA (IPR008822 from INTERPRO):  The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined.  The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex.   Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold.     Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes.   This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes.   The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma urealyticum (Q9PQY7 from SWISSPROT, ). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase . This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC . ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0004518 nuclease activity, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus.
Probab=64.98  E-value=6  Score=19.13  Aligned_cols=81  Identities=22%  Similarity=0.260  Sum_probs=41.2

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             39988999488257899999999998518996288522223477222114633565999999999999987751666169
Q gi|254780227|r  137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLI  216 (426)
Q Consensus       137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~  216 (426)
                      .+|.++..--+++-. +...|.+-.++.+.+.-|||.|+|+|..+..       .|.         +.+.=|..-+.+++
T Consensus        24 ~gi~tik~~~~~~d~-Gl~~i~~l~ke~~~d~~vvGlP~nM~Gt~g~-------~~~---------~~~kFA~r~~~~~~   86 (133)
T TIGR00250        24 QGIPTIKAQDGEPDW-GLSRIEELLKEWKVDKIVVGLPLNMDGTVGP-------LTK---------RAQKFAKRLEGRFG   86 (133)
T ss_pred             CCCHHHHHCCCCCCC-CHHHHHHHHHHCCCCEEEECCCCCCCCCCCH-------HHH---------HHHHHHHHHHHHHC
T ss_conf             440311210488862-1799999873158897886178787887250-------268---------88999988655406


Q ss_pred             E-EEECCCCCCHHHHHHHH
Q ss_conf             9-99769874289999874
Q gi|254780227|r  217 I-HEVMGRNCGWLTAYSAH  234 (426)
Q Consensus       217 i-VEvMGR~aG~LAl~~al  234 (426)
                      + |+.|=-+=.=..+.+.|
T Consensus        87 v~v~l~DERL~t~~A~~~L  105 (133)
T TIGR00250        87 VPVELMDERLSTVEAESQL  105 (133)
T ss_pred             CCEEEECCCCCHHHHHHHH
T ss_conf             6437861761378999988


No 99 
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.71  E-value=11  Score=17.52  Aligned_cols=77  Identities=16%  Similarity=0.102  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999863998899948825789999999999851899628852222347-72221146335659999999999999
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDN-DIIPIHQSLGALTAAQVSACFFDNIS  205 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDN-Di~~td~tiGfdTA~~~~a~~i~~l~  205 (426)
                      -...++.+.+.++|++|+.+.+-+-.....+       ..++|+|.+-.+.++ +++    ++.+|- .....++++.+.
T Consensus        44 e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~-------~~~iPvV~i~~~~~~~~~~----~V~~Dn-~~~~~~~~~~L~  111 (265)
T cd06290          44 ELEALELLKSRRVDALILLGGDLPEEEILAL-------AEEIPVLAVGRRVPGPGAA----SIAVDN-FQGGYLATQHLI  111 (265)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-------HCCCCEEEECCCCCCCCCC----EEEECH-HHHHHHHHHHHH
T ss_conf             9999999996599989992688885999998-------5599989982567889999----898477-999999999999


Q ss_pred             HHHHHCCCCEEEE
Q ss_conf             8775166616999
Q gi|254780227|r  206 NERSATPRSLIIH  218 (426)
Q Consensus       206 ~~A~s~~~~~~iV  218 (426)
                      .  ..+ +++.++
T Consensus       112 ~--~G~-~~i~~i  121 (265)
T cd06290         112 D--LGH-RRIAHI  121 (265)
T ss_pred             H--HCC-CCEEEE
T ss_conf             8--299-865560


No 100
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, 
Probab=63.65  E-value=11  Score=17.51  Aligned_cols=130  Identities=15%  Similarity=0.009  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             56999999998639988999488257899999999998518996288522223477222114633565999999999999
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNI  204 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l  204 (426)
                      +..+..++.+.+.++|++|+.+-+.+-.....|.+      .++|+|-+-.+.+++   .++++.+|- .....++++.+
T Consensus        42 ~~e~~~i~~l~~~~vDGiIi~~~~~~~~~~~~l~~------~~iPvV~~~~~~~~~---~~~~V~~Dn-~~~~~~a~~~L  111 (268)
T cd01575          42 EREEELLRTLLSRRPAGLILTGLEHTERTRQLLRA------AGIPVVEIMDLPPDP---IDMAVGFSH-AEAGRAMARHL  111 (268)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEECCCCCCC---CCCEEECCH-HHHHHHHHHHH
T ss_conf             99999999999569999999437799899999997------799699848868888---885897388-99999999999


Q ss_pred             HHHHHHCCCCEEEEEECCCCCCHHHH------HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98775166616999976987428999------987401433231011111110001457652328786559899999999
Q gi|254780227|r  205 SNERSATPRSLIIHEVMGRNCGWLTA------YSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLS  278 (426)
Q Consensus       205 ~~~A~s~~~~~~iVEvMGR~aG~LAl------~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~  278 (426)
                      ..  . -|+++.++.  |....+.+.      ..+++                 ..+..+...++.+.+.+.+.-.+.++
T Consensus       112 ~~--~-G~~~i~~i~--~~~~~~~~~~R~~G~~~al~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~  169 (268)
T cd01575         112 LA--R-GYRRIGFLG--ARMDDTRAQQRLEGFRAALR-----------------AAGLDPPLVVTTPEPSSFALGRELLA  169 (268)
T ss_pred             HH--C-CCCEEEEEC--CCCCCHHHHHHHHHHHHHHH-----------------HCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             97--4-997699984--89887369999999999999-----------------76989880899548998899999999


Q ss_pred             HHHHCCCC
Q ss_conf             98502895
Q gi|254780227|r  279 KVMEKKGS  286 (426)
Q Consensus       279 ~~~~~~~~  286 (426)
                      +.++....
T Consensus       170 ~~l~~~~~  177 (268)
T cd01575         170 ELLARWPD  177 (268)
T ss_pred             HHHHCCCC
T ss_conf             99956999


No 101
>KOG1342 consensus
Probab=63.21  E-value=11  Score=17.46  Aligned_cols=52  Identities=15%  Similarity=0.081  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             99999999863998899948825789999999999851899628852222347722211
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH  185 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td  185 (426)
                      ..+.++.+++.++--|++=||.=|.+..++...|.      + -|.+-..++|++|..|
T Consensus       280 h~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYe------T-~v~~~~~~~~elP~n~  331 (425)
T KOG1342         280 HAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYE------T-GVLLDQELPNELPYND  331 (425)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH------H-HHHHCCCCCCCCCCCC
T ss_conf             89999999973986799747865513478899887------6-6741765643278741


No 102
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal  HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=62.56  E-value=11  Score=17.39  Aligned_cols=66  Identities=14%  Similarity=-0.137  Sum_probs=39.1

Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             999999986399889994882578999999999985189962885222234772221146335659999999999999
Q gi|254780227|r  128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS  205 (426)
Q Consensus       128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~  205 (426)
                      ..+.+.+....+|++|+.+.+.+-.....+.+      .++|+|.+    |.+.++.+ |+..|-. .-...+++.|.
T Consensus        45 ~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~------~~~PvV~i----d~~~~~~~-~v~~Dn~-~~~~~a~~~L~  110 (269)
T cd06297          45 RYLESTTLAYLTDGLLLASYDLTERLAERRLP------TERPVVLV----DAENPRFD-SFYLDNR-LGGRLAGAYLA  110 (269)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH------CCCCEEEE----ECCCCCCC-EEEECHH-HHHHHHHHHHH
T ss_conf             99999998448887997788999899999986------39989999----33789989-8997729-99999999999


No 103
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=61.03  E-value=12  Score=17.21  Aligned_cols=103  Identities=14%  Similarity=0.135  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCC-E-EEEECCH-----HHCCCCCCCEECCCCCHHHHHHHHHCC-------CCCCCCCCCC
Q ss_conf             148999999999999856997-8-9998383-----660107991304626988887464078-------7400336788
Q gi|254780227|r   42 PCLSSIIGMLINHYNKILPKA-E-LIYYRFG-----YQGLLLDDKITITEDMRQNAEQLLSYG-------GSPIGNSRVK  107 (426)
Q Consensus        42 PG~N~~I~~iv~~a~~~~~~~-~-v~G~~~G-----~~GL~~~~~~~l~~l~~~~v~~~~~~G-------Gt~LgtsR~~  107 (426)
                      +.+..-++..++.+..+.|.. . -||.-++     -.|+++.+. ...+-|.+.++.|.+.-       -|.+|++|  
T Consensus        11 ~~g~~~L~~t~~~L~~l~P~FvSVTyGAgGs~~~~~~~G~l~~~~-R~r~~T~~~~~~I~~~~~~~~v~HLtC~~~t~--   87 (302)
T TIGR00676        11 EEGEENLWETVDRLEQLDPDFVSVTYGAGGSTRDRLGDGLLKRRI-RIRPGTVRIVRRIKKETGIPTVPHLTCIGSTR--   87 (302)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH--
T ss_conf             356899999999974269985888654888524658897546664-26777899999998732886300000236898--


Q ss_pred             CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHH-----------HHHHHHHHHHHHHC
Q ss_conf             8653011101234567456999999998639988999488257-----------89999999999851
Q gi|254780227|r  108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT-----------NTTACDLLRYLKEK  164 (426)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS-----------~~~a~~L~e~~~~~  164 (426)
                                       ++++.+++.++.+||..++..=||=.           +..|..|-++.++.
T Consensus        88 -----------------~e~~~~L~~y~~~Gi~~ilALRGD~p~~~~~~~~~~~~~yA~eLV~~Ir~~  138 (302)
T TIGR00676        88 -----------------EEIEEILREYRELGIRNILALRGDPPDETDFEPAPGGFKYASELVEFIRSE  138 (302)
T ss_pred             -----------------HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             -----------------999999999987488679874376888886565887667768999999836


No 104
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=60.83  E-value=12  Score=17.19  Aligned_cols=44  Identities=14%  Similarity=0.100  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             6999999998639988999488257899999999998518996288522
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLP  174 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiP  174 (426)
                      .....++.+.+.++|++|+++.+........+.     +..++|+|.+-
T Consensus       100 ~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~-----~~~~iP~V~~d  143 (327)
T PRK10423        100 RMNRNLETLMQKRVDGLLLLCTETHQPSREIMQ-----RYPSVPTVMMD  143 (327)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH-----HCCCCCEEEEC
T ss_conf             999999999955987699974777762899997-----27998689963


No 105
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=60.65  E-value=6.9  Score=18.73  Aligned_cols=27  Identities=22%  Similarity=0.439  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             99999999863998899948825789999
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTAC  155 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~  155 (426)
                      ..+..+.+++++||  ++.||+-|+.-|.
T Consensus         8 ~p~~a~vf~~~gID--FCCgG~~~L~eac   34 (216)
T TIGR03652         8 IPRAARIFRKYGID--FCCGGNVSLAEAC   34 (216)
T ss_pred             CCCHHHHHHHCCCC--EECCCCHHHHHHH
T ss_conf             94488999992972--0289961699999


No 106
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=60.42  E-value=12  Score=17.15  Aligned_cols=83  Identities=12%  Similarity=0.033  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             69999999986399889994882578999-9999999851899628852222347-722211463356599999999999
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTA-CDLLRYLKEKNYNITVVGLPKTIDN-DIIPIHQSLGALTAAQVSACFFDN  203 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a-~~L~e~~~~~~~~i~vigiPKTIDN-Di~~td~tiGfdTA~~~~a~~i~~  203 (426)
                      .....++.|.++++|++|+++...+.... ..+.+.+++  .++|+|.+-.+.++ ++    .++++|-.. .+..+++.
T Consensus        43 ~e~~~l~~l~~~~vdGiIl~~~~~~~~~~~~~~~~~l~~--~~iPvV~i~~~~~~~~~----~~V~~Dn~~-a~~~a~~~  115 (273)
T cd01541          43 RERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEK--LGIPYVFINASYEELNF----PSLVLDDEK-GGYKATEY  115 (273)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHH--CCCCEEEEECCCCCCCC----CEEEECCHH-HHHHHHHH
T ss_conf             999999999965999899925310357877799999997--69989999567788999----889978599-99999999


Q ss_pred             HHHHHHHCCCCEEEE
Q ss_conf             998775166616999
Q gi|254780227|r  204 ISNERSATPRSLIIH  218 (426)
Q Consensus       204 l~~~A~s~~~~~~iV  218 (426)
                      +..  .. |+++.++
T Consensus       116 L~~--~G-~~~i~~i  127 (273)
T cd01541         116 LIE--LG-HRKIAGI  127 (273)
T ss_pred             HHH--CC-CCCEEEE
T ss_conf             985--69-9608998


No 107
>KOG0571 consensus
Probab=59.94  E-value=11  Score=17.30  Aligned_cols=23  Identities=30%  Similarity=0.205  Sum_probs=10.9

Q ss_pred             EEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             89994882578999999999985
Q gi|254780227|r  141 ILHTIGGDDTNTTACDLLRYLKE  163 (426)
Q Consensus       141 ~Li~IGGdgS~~~a~~L~e~~~~  163 (426)
                      +.+.-||=||--.|...+.+.++
T Consensus       229 GvLLSGGLDSSLvAsia~R~lk~  251 (543)
T KOG0571         229 GVLLSGGLDSSLVASIAARELKK  251 (543)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHH
T ss_conf             58950773189999999999987


No 108
>PRK06186 hypothetical protein; Validated
Probab=59.76  E-value=12  Score=17.07  Aligned_cols=70  Identities=14%  Similarity=0.097  Sum_probs=41.2

Q ss_pred             CCCCEEEEECCHHH--HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf             39988999488257--89999999999851899628852222347722211463356599999999999998775166--
Q gi|254780227|r  137 SGVTILHTIGGDDT--NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATP--  212 (426)
Q Consensus       137 ~~Id~Li~IGGdgS--~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~--  212 (426)
                      .++|++++.||.|.  ..+...-.+|++++  +||..             -.|+|++.|+=..+.-+-.+ .+|.|+.  
T Consensus        52 ~~~dgilv~pGfG~RG~eGki~Ai~yARen--~iP~L-------------GICLGmQ~avIEfARnvlgl-~dAnS~Efd  115 (229)
T PRK06186         52 AGFDGIWCVPGSPYRNEDGALTAIRFAREN--GIPFL-------------GTCGGFQHALLEYARNVLGW-ADAEHAETD  115 (229)
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHC--CCCEE-------------EEHHHHHHHHHHHHHHHCCC-CCCCCCCCC
T ss_conf             259989989987776563899999999876--99878-------------64277899999999986599-888764557


Q ss_pred             --CCEEEEEECC
Q ss_conf             --6169999769
Q gi|254780227|r  213 --RSLIIHEVMG  222 (426)
Q Consensus       213 --~~~~iVEvMG  222 (426)
                        ....++..|+
T Consensus       116 ~~~~~pvi~~l~  127 (229)
T PRK06186        116 PEASRPVIAPLS  127 (229)
T ss_pred             CCCCCEEEECCC
T ss_conf             899971893688


No 109
>pfam02401 LYTB LytB protein. The mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis is essential in many eubacteria, plants, and the malaria parasite. The LytB gene is involved in the trunk line of the MEP pathway.
Probab=59.70  E-value=12  Score=17.07  Aligned_cols=29  Identities=10%  Similarity=0.098  Sum_probs=18.0

Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             3687751489999999999998569978999
Q gi|254780227|r   36 TAGGIAPCLSSIIGMLINHYNKILPKAELIY   66 (426)
Q Consensus        36 tsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G   66 (426)
                      ..-|=|.|...+|.-+-+++.. + +..+|-
T Consensus         5 ~~~GFC~GV~rAi~~a~~~~~~-~-~~~vy~   33 (280)
T pfam02401         5 EPRGFCAGVKRAIQIAERALQK-S-GGPVYV   33 (280)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHH-C-CCCEEE
T ss_conf             7898681399999999999987-6-997798


No 110
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=59.14  E-value=13  Score=17.01  Aligned_cols=93  Identities=17%  Similarity=0.190  Sum_probs=56.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r   31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN  110 (426)
Q Consensus        31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~  110 (426)
                      ||.|+-|||=   =|+..+.+.+    .....++|.+.+ =.|..     .+                   .++-     
T Consensus         1 kILvIGsGgR---EHAi~~~l~~----s~~~~~l~~~pg-N~gi~-----~~-------------------~~~~-----   43 (99)
T pfam02844         1 KVLVVGSGGR---EHALAWKLAQ----SPRVEKVYVAPG-NPGTA-----QL-------------------AKNV-----   43 (99)
T ss_pred             CEEEECCCHH---HHHHHHHHHC----CCCCCEEEEECC-CCHHH-----HH-------------------CEEE-----
T ss_conf             9899878879---9999999964----999776999589-81577-----74-------------------7501-----


Q ss_pred             CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             30111012345674569999999986399889994882578999999999985189962885222
Q gi|254780227|r  111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPK  175 (426)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPK  175 (426)
                                ..+..+++.+++-+++++|| |++||-..-+..  =|++++.++  +|+|+|=.|
T Consensus        44 ----------~i~~~d~~~i~~~~~~~~id-lviiGPE~pL~~--Gl~D~l~~~--gi~vfGP~k   93 (99)
T pfam02844        44 ----------NIDITDFEALADFAKEENID-LVVVGPEAPLVA--GIVDALRAA--GIPVFGPSK   93 (99)
T ss_pred             ----------CCCCCCHHHHHHHHHHCCCC-EEEECCCHHHHH--HHHHHHHHC--CCEEECCCH
T ss_conf             ----------45844799999999981974-999896067787--889999868--991799286


No 111
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=59.01  E-value=13  Score=16.99  Aligned_cols=90  Identities=18%  Similarity=0.207  Sum_probs=53.2

Q ss_pred             CEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC--CCCC-CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             7899983836601079913046269888874640787--4003-367888653011101234567456999999998639
Q gi|254780227|r   62 AELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG--SPIG-NSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSG  138 (426)
Q Consensus        62 ~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG--t~Lg-tsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  138 (426)
                      -.-+=+-+|-.|-       ....+...+..+.+..|  .+.+ |+|..               +...++..+..+..+|
T Consensus        29 pd~isVT~gaggs-------~~~~t~~~a~~i~~~~gi~~i~Hltcr~~---------------n~~~l~~~L~~~~~~G   86 (274)
T cd00537          29 PDFVSVTDGAGGS-------TRDMTLLAAARILQEGGIEPIPHLTCRDR---------------NRIELQSILLGAHALG   86 (274)
T ss_pred             CCEEEECCCCCCC-------CHHHHHHHHHHHHHHHCCCEEEEEECCCC---------------CHHHHHHHHHHHHHCC
T ss_conf             9989938898985-------62409999999999739982268601789---------------9999999999999859


Q ss_pred             CCEEEEECCHH------------HHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             98899948825------------789999999999851899628852
Q gi|254780227|r  139 VTILHTIGGDD------------TNTTACDLLRYLKEKNYNITVVGL  173 (426)
Q Consensus       139 Id~Li~IGGdg------------S~~~a~~L~e~~~~~~~~i~vigi  173 (426)
                      |+.++++.||-            ....+..|-++.+..+.+.-.||+
T Consensus        87 i~niLaLrGD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igv  133 (274)
T cd00537          87 IRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGV  133 (274)
T ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECC
T ss_conf             86388735888877888888887746799999999997589850056


No 112
>KOG1184 consensus
Probab=57.21  E-value=14  Score=16.80  Aligned_cols=92  Identities=20%  Similarity=0.164  Sum_probs=62.5

Q ss_pred             HHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCCHH-------------------HHH
Q ss_conf             863998899948825789999999999851899628852222347722-211463356-------------------599
Q gi|254780227|r  135 MQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII-PIHQSLGAL-------------------TAA  194 (426)
Q Consensus       135 ~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~-~td~tiGfd-------------------TA~  194 (426)
                      +.+||.++|+-=|-|-++.-+-++-...++-.=+-|+|+|-|=|++-. ...||+|-.                   +-.
T Consensus        63 R~~Gi~a~VtTfgVGeLSAlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~lLHHTLG~gDF~~f~rm~k~vsc~~a~I~~~  142 (561)
T KOG1184          63 RSKGIGACVTTFGVGELSALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDI  142 (561)
T ss_pred             HHCCCEEEEEEECCCHHHHHCCCCHHHHHCCCEEEEECCCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf             53582189997021312331131033652488799977898540012302101137886168999987655677534487


Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
Q ss_conf             9999999999987751666169999769874289
Q gi|254780227|r  195 QVSACFFDNISNERSATPRSLIIHEVMGRNCGWL  228 (426)
Q Consensus       195 ~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~L  228 (426)
                      +.+.+.||+.-.+|-..+|.+++ ++ =-+.+++
T Consensus       143 e~A~~~ID~aI~~~~~~~kPVYi-~v-P~n~~~~  174 (561)
T KOG1184         143 EDAPEQIDKAIRTALKESKPVYI-GV-PANLADL  174 (561)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEE-EC-CCCCCCC
T ss_conf             67699999999999874498599-82-1430357


No 113
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=56.87  E-value=14  Score=16.76  Aligned_cols=82  Identities=21%  Similarity=0.235  Sum_probs=59.9

Q ss_pred             HCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCCCCC-------------------HHHHHH
Q ss_conf             63998899948825789999999999851899628852222347722-2114633-------------------565999
Q gi|254780227|r  136 QSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII-PIHQSLG-------------------ALTAAQ  195 (426)
Q Consensus       136 ~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~-~td~tiG-------------------fdTA~~  195 (426)
                      -+||.+|+.-=|-|-++..+-++--..++-.=+-|+|+|-|=+..-. ...||+|                   +-|..+
T Consensus        64 ~~Gi~alvTTfGVGELSA~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~  143 (557)
T COG3961          64 LNGISALVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDIN  143 (557)
T ss_pred             HCCCEEEEEECCCCHHHHHCCCCHHHHHCCCEEEEECCCCCCHHHCCCHHEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             44841899950330455430300345640877999758982421225111432268862899997566566766437710


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             9999999999877516661699
Q gi|254780227|r  196 VSACFFDNISNERSATPRSLII  217 (426)
Q Consensus       196 ~~a~~i~~l~~~A~s~~~~~~i  217 (426)
                      .+...||++-.++...+|.+++
T Consensus       144 ~A~~eIDrvi~~~~~~~RPvYI  165 (557)
T COG3961         144 TAPREIDRVIRTALKQRRPVYI  165 (557)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEE
T ss_conf             1179999999999975498489


No 114
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=56.57  E-value=14  Score=16.73  Aligned_cols=58  Identities=21%  Similarity=0.152  Sum_probs=27.1

Q ss_pred             CCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC-CCHHHHHHHHHHHHHH
Q ss_conf             9889994882578999999999985189962885222234772221146-3356599999999999
Q gi|254780227|r  139 VTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS-LGALTAAQVSACFFDN  203 (426)
Q Consensus       139 Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t-iGfdTA~~~~a~~i~~  203 (426)
                      -|.|+++   |...-...+.|.   ++.+||||++--| |+|-.++|+- ||=|-|.+-++-...-
T Consensus       157 Pd~l~Vi---Dp~~e~iAv~EA---~klgIPVvAlvDT-n~dpd~VD~~IP~Ndda~rsi~Li~~~  215 (252)
T COG0052         157 PDVLFVI---DPRKEKIAVKEA---NKLGIPVVALVDT-NCDPDGVDYVIPGNDDAIRSIALIYWL  215 (252)
T ss_pred             CCEEEEE---CCCHHHHHHHHH---HHCCCCEEEEECC-CCCCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf             9989996---881768999999---9759998998418-999765765522887089899999999


No 115
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.54  E-value=14  Score=16.73  Aligned_cols=127  Identities=10%  Similarity=0.032  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             45699999999863998899948825789999999999851899628852222347722211463356599999999999
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDN  203 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~  203 (426)
                      ++.....++.+.++++|++|+.+....-.....|.+      .++|+|.+=... ++.+    ++..|-.- .+..+++.
T Consensus        41 ~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~------~~iPvV~~~~~~-~~~~----~v~~dn~~-~~~~~~~~  108 (265)
T cd06285          41 PDAQRRAIEMLLDRRVDGLILGDARSDDHFLDELTR------RGVPFVLVLRHA-GTSP----AVTGDDVL-GGRLATRH  108 (265)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH------CCCCEEEECCCC-CCCC----EEEECHHH-HHHHHHHH
T ss_conf             899999999999569999997688799899999996------799789985568-9999----79877799-99999999


Q ss_pred             HHHHHHHCCCCEEEEEECC-------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             9987751666169999769-------874289999874014332310111111100014576523287865598999999
Q gi|254780227|r  204 ISNERSATPRSLIIHEVMG-------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIER  276 (426)
Q Consensus       204 l~~~A~s~~~~~~iVEvMG-------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~  276 (426)
                      +. + .. |+++.++--..       |..||.......                    +......++.+..++.+...+.
T Consensus       109 Li-~-~G-~~~i~~l~~~~~~~~~~~R~~Gf~~a~~~~--------------------~~~~~~~~i~~~~~~~~~~~~~  165 (265)
T cd06285         109 LL-D-LG-HRRIAVLAGPDYASTARDRLAGFRAALAEA--------------------GIEVPPERIVYSGFDIEGGEAA  165 (265)
T ss_pred             HH-H-HC-CCCEEECCCCCCCCHHHHHHHHHHHHHHHC--------------------CCCCCHHHEECCCCCHHHHHHH
T ss_conf             99-8-38-865875478877705999999999999986--------------------9998756601366215569999


Q ss_pred             HHHHHHCCC
Q ss_conf             999850289
Q gi|254780227|r  277 LSKVMEKKG  285 (426)
Q Consensus       277 i~~~~~~~~  285 (426)
                      +++.+....
T Consensus       166 ~~~~l~~~~  174 (265)
T cd06285         166 AEKLLRSDS  174 (265)
T ss_pred             HHHHHHCCC
T ss_conf             999985699


No 116
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=56.40  E-value=14  Score=16.71  Aligned_cols=128  Identities=14%  Similarity=-0.010  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHCCHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCH
Q ss_conf             86899998733212103487633799983687751489999999999998569978999838366010799130462698
Q gi|254780227|r    8 ISNLDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMR   87 (426)
Q Consensus         8 ~~~~~~~~~~g~~~~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~   87 (426)
                      .+...+|.-+|...-   ++.+--|||++|..|--=.|.-+.-+.+.++.--...-.+.+..+.-++-++          
T Consensus        24 ~~~r~l~~a~G~~~~---~~~kP~IgI~~s~~d~~p~h~hl~~l~~~vk~~i~~aGg~p~ef~t~~v~DG----------   90 (575)
T COG0129          24 AGHRSLLRATGLTDE---DFGKPIIGIANSYNDMVPGHQHLKDLAQLVKEGIREAGGVPVEFGTIAVCDG----------   90 (575)
T ss_pred             CCHHHHHHHHCCCHH---HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC----------
T ss_conf             105899988299957---8299869998134667672063999999999999983994167278866572----------


Q ss_pred             HHHHHHHHCCCCCCC--CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCC
Q ss_conf             888746407874003--367888653011101234567456999999998639988999488257899999999998518
Q gi|254780227|r   88 QNAEQLLSYGGSPIG--NSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKN  165 (426)
Q Consensus        88 ~~v~~~~~~GGt~Lg--tsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~  165 (426)
                           +.+.-.-+.-  -||                  +--...+...+..+-+|++|+|||=|-..=+..++..    .
T Consensus        91 -----iamG~~GM~~SL~SR------------------elIAds~e~~~~~~~~Da~V~i~~CDKi~PG~lmaa~----r  143 (575)
T COG0129          91 -----IAMGHDGMPYSLPSR------------------ELIADSVEEVLSAHPFDGVVLIGGCDKITPGMLMAAA----R  143 (575)
T ss_pred             -----CCCCCCCCCCCCCCH------------------HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH----H
T ss_conf             -----014889861431159------------------9999999999735775548984678875489999998----6


Q ss_pred             CCCEEEEECC
Q ss_conf             9962885222
Q gi|254780227|r  166 YNITVVGLPK  175 (426)
Q Consensus       166 ~~i~vigiPK  175 (426)
                      .+||.|-||.
T Consensus       144 ~niPaIfv~g  153 (575)
T COG0129         144 LNIPAIFVSG  153 (575)
T ss_pred             CCCCEEEECC
T ss_conf             5998799537


No 117
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.07  E-value=14  Score=16.68  Aligned_cols=139  Identities=12%  Similarity=0.048  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCCCEEEEECCCCCCC-CCCCCCCCCHH--HHHHHHHH
Q ss_conf             4569999999986399889994882578-99999999998518996288522223477-22211463356--59999999
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTN-TTACDLLRYLKEKNYNITVVGLPKTIDND-IIPIHQSLGAL--TAAQVSAC  199 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~-~~a~~L~e~~~~~~~~i~vigiPKTIDND-i~~td~tiGfd--TA~~~~a~  199 (426)
                      .+.....++.+.++++|++|+.|=.++. .....+.      ..++|||.+-...+++ ++    +++.|  .|...++ 
T Consensus        41 ~~~e~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~l~------~~~iPvV~i~~~~~~~~~~----~V~~d~~~~~~~a~-  109 (268)
T cd06289          41 VERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLA------ESGIPVVLVAREVAGAPFD----YVGPDNAAGARLAT-  109 (268)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH------HCCCCEEEECCCCCCCCCC----EEEECHHHHHHHHH-
T ss_conf             899999999999659998999468889999999999------7599899836767999987----89977799999999-


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999987751666169999769874289999874014332310111111100014576523287865598999999999
Q gi|254780227|r  200 FFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSK  279 (426)
Q Consensus       200 ~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~  279 (426)
                        +.+. + ..+ +++.++  .|...-..+. --.. |         ....-...+...+..++.+.+++.+.-.+.+++
T Consensus       110 --~~L~-~-~G~-~~i~~i--~~~~~~~~~~-~R~~-G---------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (268)
T cd06289         110 --EHLI-S-LGH-RRIAFI--GGLEDSSTRR-ERLA-G---------YRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQ  171 (268)
T ss_pred             --HHHH-H-HCC-CEEEEE--CCCCCCCHHH-HHHH-H---------HHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf             --9999-7-398-709995--2898870699-9999-9---------999999769986643453168865569999999


Q ss_pred             HHHCCCCEEEEE
Q ss_conf             850289538995
Q gi|254780227|r  280 VMEKKGSVAIFV  291 (426)
Q Consensus       280 ~~~~~~~~vIVv  291 (426)
                      .++.+...-.++
T Consensus       172 ~l~~~~~~~aii  183 (268)
T cd06289         172 LLDLPPRPTAIV  183 (268)
T ss_pred             HHHCCCCCCEEC
T ss_conf             984699986203


No 118
>KOG4435 consensus
Probab=56.00  E-value=14  Score=16.67  Aligned_cols=54  Identities=19%  Similarity=0.235  Sum_probs=37.2

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             745699999999863998899948825789999999999851899628852222347
Q gi|254780227|r  123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDN  179 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDN  179 (426)
                      ++.+.+..++-+.... |.+++.|||||....-  .-.++.++-..+|=-+|.--||
T Consensus       102 ~~gqak~l~e~~~t~~-Dii~VaGGDGT~~eVV--TGi~Rrr~~~~pv~~~P~G~~~  155 (535)
T KOG4435         102 NQGQAKALAEAVDTQE-DIIYVAGGDGTIGEVV--TGIFRRRKAQLPVGFYPGGYDN  155 (535)
T ss_pred             CHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHH--HHHHHCCCCCCCEEECCCCCCH
T ss_conf             3778999999861677-7699956887277765--7887545665854543576454


No 119
>PRK12361 hypothetical protein; Provisional
Probab=55.91  E-value=14  Score=16.66  Aligned_cols=49  Identities=29%  Similarity=0.401  Sum_probs=37.1

Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHH-HHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             9999999863998899948825789999-999999851899628852222347722
Q gi|254780227|r  128 EVSAHHLMQSGVTILHTIGGDDTNTTAC-DLLRYLKEKNYNITVVGLPKTIDNDII  182 (426)
Q Consensus       128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~-~L~e~~~~~~~~i~vigiPKTIDNDi~  182 (426)
                      +..++.-.+.|.|-+|+.|||||.+.+. .|.      +.+++.=-||-==-||+.
T Consensus       286 ~~LArqAv~~GaDlVVAaGGDGTVneVA~aLv------gTdv~LGIIPlGTaN~lA  335 (546)
T PRK12361        286 NTLAKQARKAGADIIIACGGDGTVTEVASELV------NTDITLGIIPLGTANALS  335 (546)
T ss_pred             HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC------CCCCCEEEECCCCHHHHH
T ss_conf             99999999749999999888529999999971------899824996177557889


No 120
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=55.87  E-value=10  Score=17.61  Aligned_cols=49  Identities=8%  Similarity=0.092  Sum_probs=37.9

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             745699999999863998899948825789999999999851899628852
Q gi|254780227|r  123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL  173 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi  173 (426)
                      ++++.+++++++++.+=|-.|+|+=|+..-+-..-.|.+++.  ++|+|.|
T Consensus        44 ~pe~~~~v~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~--~iP~IvI   92 (276)
T PRK00994         44 GPEEVERVVKKMKEWKPDFIIVISPNPAAPGPTKAREILSAA--GIPCIVI   92 (276)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHC--CCCEEEE
T ss_conf             978999999998840899899978998899956799999756--9988997


No 121
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=55.75  E-value=12  Score=17.27  Aligned_cols=65  Identities=18%  Similarity=0.062  Sum_probs=36.0

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECC----CCCCCCCCCCCCCCHHH
Q ss_conf             74569999999986399889994882578999999999985189962885222----23477222114633565
Q gi|254780227|r  123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPK----TIDNDIIPIHQSLGALT  192 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPK----TIDNDi~~td~tiGfdT  192 (426)
                      .++.++++++.|.+-+ .-+|++|+.-....+......+.+ ..++||+.-|.    .+++|-|   ...|+..
T Consensus       183 ~~~~l~~~~~~L~~Ak-rPvii~G~g~~~~~a~~~l~~lae-~l~~PV~~t~~~gk~~~~~~hp---~~~G~~~  251 (521)
T PRK07092        183 DPAALAALGDALDAAR-NPALVVGPAVDRAGAWDDAVRLAE-RHRAPVWVAPMSGRCSFPERHP---LFAGFLP  251 (521)
T ss_pred             CHHHHHHHHHHHHCCC-CCEEEECCCCCCCCHHHHHHHHHH-HHCCCEEEECCCCCCCCCCCCC---CCCCCCC
T ss_conf             9999999999997289-978998767040354999999999-8699778732766424689986---4324254


No 122
>COG3395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.16  E-value=14  Score=16.85  Aligned_cols=24  Identities=13%  Similarity=0.027  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             999999999999997799866999
Q gi|254780227|r  363 SLIKKMVVLAVDSAISGISGVTGE  386 (426)
Q Consensus       363 ~~a~~lG~~Av~~~~~G~sgvmv~  386 (426)
                      .....|+..|.+++..|.++..++
T Consensus       330 ~v~~~l~~la~~l~~~~v~~liva  353 (413)
T COG3395         330 AVEALLGDLARRLVARGVRRLIVA  353 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHCEEEEC
T ss_conf             999999999999988542058860


No 123
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=55.14  E-value=15  Score=16.58  Aligned_cols=35  Identities=14%  Similarity=0.207  Sum_probs=24.5

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             3799983687751489999999999998569978999
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIY   66 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G   66 (426)
                      ++|-+-.+-|=|.|...+|.-+-+++...  +..+|-
T Consensus         1 MkI~lA~~~GFC~GV~rAi~~a~~~~~~~--~~~iyt   35 (304)
T PRK01045          1 MKILLANPRGFCAGVDRAIEIVERALEKY--GAPIYV   35 (304)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEE
T ss_conf             97999378986825999999999999854--996898


No 124
>TIGR01980 sufB FeS assembly protein SufB; InterPro: IPR010231   Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems.   The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly .   The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets.   In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen .   This entry represents SufB, which is part of the SUF system and forms a complex with SufBCD.; GO: 0005515 protein binding, 0016226 iron-sulfur cluster assembly.
Probab=53.82  E-value=5.3  Score=19.48  Aligned_cols=124  Identities=12%  Similarity=-0.004  Sum_probs=74.1

Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEE------EEECCCCCCCCC--CCCCCCCHHHHHHHHHH
Q ss_conf             9999999863998899948825789999999999851899628------852222347722--21146335659999999
Q gi|254780227|r  128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITV------VGLPKTIDNDII--PIHQSLGALTAAQVSAC  199 (426)
Q Consensus       128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~v------igiPKTIDNDi~--~td~tiGfdTA~~~~a~  199 (426)
                      +.|.++++||||=-                +|-  +.=.++.|      ..|=-||--||.  |+=+| =+|||++.+=+
T Consensus       100 ~eIk~TFEkLGIPe----------------aE~--k~LaGvav~AQYdSEviY~~~Ke~L~~~GVIF~-d~d~Al~~YPd  160 (469)
T TIGR01980       100 DEIKDTFEKLGIPE----------------AER--KALAGVAVGAQYDSEVIYHNIKEDLEEKGVIFC-DMDTALKEYPD  160 (469)
T ss_pred             HHHHHHHHHCCCCH----------------HHH--HHHCCCEEEEEEEEEEEECCCHHHHHHCCEEEC-CHHHHHHHCHH
T ss_conf             89998764448617----------------999--874253577886204462220467562987863-85998651725


Q ss_pred             HHHHHHHHH-HHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-
Q ss_conf             999999877-516661699997698742899998740143323101111111000145765232878655989999999-
Q gi|254780227|r  200 FFDNISNER-SATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERL-  277 (426)
Q Consensus       200 ~i~~l~~~A-~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i-  277 (426)
                      .|.+-.-+. ..-...-           |-||++|..||=.                    +||+|+..--..+|..+. 
T Consensus       161 LVKeYF~~v~VPp~DnK-----------FAALn~AVWSGGs--------------------FvYVPkGV~v~~PLqtYFR  209 (469)
T TIGR01980       161 LVKEYFGKVCVPPSDNK-----------FAALNGAVWSGGS--------------------FVYVPKGVRVDMPLQTYFR  209 (469)
T ss_pred             HHHHHCCCCCCCCCCCH-----------HHHHHHHEEECCE--------------------EEEECCCCEECCCCCCCEE
T ss_conf             67866270025876341-----------4664021102785--------------------7984789866663000000


Q ss_pred             -HHHHH-CCCCEEEEEECCCCCCCCH
Q ss_conf             -99850-2895389950421111110
Q gi|254780227|r  278 -SKVME-KKGSVAIFVSEGACRDVIM  301 (426)
Q Consensus       278 -~~~~~-~~~~~vIVvsEG~~~~~~~  301 (426)
                       ..... .--|.+||+=||+...++.
T Consensus       210 IN~~~~GQFErTLiIadeGa~VhYiE  235 (469)
T TIGR01980       210 INSENTGQFERTLIIADEGASVHYIE  235 (469)
T ss_pred             CCCCCCCCCEEEEEEEEECCEEEEEE
T ss_conf             28477886325889995177488870


No 125
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=53.02  E-value=16  Score=16.37  Aligned_cols=129  Identities=15%  Similarity=0.114  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             569999999986399889994882578999999999985189962885222-2347722211463356599999999999
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPK-TIDNDIIPIHQSLGALTAAQVSACFFDN  203 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPK-TIDNDi~~td~tiGfdTA~~~~a~~i~~  203 (426)
                      +.....++.+.+.++|++|++++..+-.....+.+.     .++|+|.+-- ..+.+.  ++ ++. +-...-...+++.
T Consensus       102 ~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~l~~~-----~~iP~V~id~~~~~~~~--~~-~v~-~~~~~~~~~a~~~  172 (335)
T PRK10703        102 EKQRAYLSMLAQKRVDGLLVMCSEYPEPLLSMLEEY-----RHIPMVVMDWGEAKADF--TD-AII-DNAFEGGYLAGRY  172 (335)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH-----CCCCEEEEECCCCCCCC--CC-EEE-CCHHHHHHHHHHH
T ss_conf             999999999995588779997688997999999970-----89988999477777888--95-997-4879999999999


Q ss_pred             HHHHHHHCCCCEEEEEE-------CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             99877516661699997-------69874289999874014332310111111100014576523287865598999999
Q gi|254780227|r  204 ISNERSATPRSLIIHEV-------MGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIER  276 (426)
Q Consensus       204 l~~~A~s~~~~~~iVEv-------MGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~  276 (426)
                      |. + .. |+++.++--       -.|..||.......                    +-..+-.++-+..++.+.-.+.
T Consensus       173 L~-~-~G-hr~Ia~i~~~~~~~~~~~R~~gf~~al~~~--------------------gl~~~~~~i~~~~~~~~~g~~~  229 (335)
T PRK10703        173 LI-E-RG-HRDIGVIPGPLERNTGAGRLAGFMKAMEEA--------------------NIKVPEEWIVQGDFEPESGYEA  229 (335)
T ss_pred             HH-H-CC-CCEEEEEECCCCCCHHHHHHHHHHHHHHHC--------------------CCCCCHHEEEECCCCHHHHHHH
T ss_conf             99-7-59-986999958876521789999999999985--------------------9998813289657885889999


Q ss_pred             HHHHHHCCC
Q ss_conf             999850289
Q gi|254780227|r  277 LSKVMEKKG  285 (426)
Q Consensus       277 i~~~~~~~~  285 (426)
                      +++.+....
T Consensus       230 ~~~ll~~~~  238 (335)
T PRK10703        230 MQQILSQEH  238 (335)
T ss_pred             HHHHHHCCC
T ss_conf             999995699


No 126
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031   Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=52.08  E-value=13  Score=17.01  Aligned_cols=74  Identities=12%  Similarity=0.208  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             74569999999986399-88999488257899999999998518996288522223477222114633565999999999
Q gi|254780227|r  123 DENPLEVSAHHLMQSGV-TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFF  201 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~I-d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i  201 (426)
                      .++.+...+++.++.|+ ..+|.+=|.     |+-|.=... -.-.+||||||---.+ +.|.|                
T Consensus        38 TP~~~~~ya~~a~~~G~P~ViIAgAGg-----aAHLPGmvA-a~T~~PVIGVPv~~~~-l~G~D----------------   94 (159)
T TIGR01162        38 TPELMFEYAKEAEERGIPKVIIAGAGG-----AAHLPGMVA-ALTTLPVIGVPVPSKA-LSGLD----------------   94 (159)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCC-----CCCCCCCCC-CCCCCCEEECCCCCCC-CCCHH----------------
T ss_conf             808899999999867899799840351-----133401001-1478775503477342-45213----------------


Q ss_pred             HHHHHHHHHCCCCEEEEEECC
Q ss_conf             999987751666169999769
Q gi|254780227|r  202 DNISNERSATPRSLIIHEVMG  222 (426)
Q Consensus       202 ~~l~~~A~s~~~~~~iVEvMG  222 (426)
                       .|.+.. .+|..+=+ =||+
T Consensus        95 -SLlSiV-QMP~GvPV-ATva  112 (159)
T TIGR01162        95 -SLLSIV-QMPAGVPV-ATVA  112 (159)
T ss_pred             -HHHHHH-HCCCCCCE-EEEE
T ss_conf             -544543-07589746-5300


No 127
>pfam09001 DUF1890 Domain of unknown function (DUF1890). This domain is found in a set of hypothetical archaeal proteins.
Probab=52.07  E-value=17  Score=16.27  Aligned_cols=88  Identities=19%  Similarity=0.240  Sum_probs=51.1

Q ss_pred             HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCC--CCCCCCCH---HHHHHHHHHHHHH
Q ss_conf             9999986399889994882578999999999985189962-8852222347722--21146335---6599999999999
Q gi|254780227|r  130 SAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNIT-VVGLPKTIDNDII--PIHQSLGA---LTAAQVSACFFDN  203 (426)
Q Consensus       130 ~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~-vigiPKTIDNDi~--~td~tiGf---dTA~~~~a~~i~~  203 (426)
                      ....|++.|++.+|.  |   ...|.+|.+.....++=+. ++-+-++|.+ +.  ..|.+|||   |+++++++.+=  
T Consensus        19 l~~~Lk~~G~~v~Va--~---npAA~kLl~vaDpe~~Ylk~~~dld~~l~~-i~e~~~d~~~~FvHNDagvsYa~T~~--   90 (138)
T pfam09001        19 LSNKLKDKGFRVVVA--A---NPAALKLLEVADPEKYYLKEVVDLDKGIAD-IAEGDFDLIFGFVHNDAGVSYAVTMK--   90 (138)
T ss_pred             HHHHHHHCCCCEEEE--C---CHHHHHHHHHCCCCCCHHCCEEEHHHHHHH-HHCCCCCEEEEEEECCCHHHHHHHHH--
T ss_conf             999987669606996--6---988873612118764001043559998745-52068887999973562266789888--


Q ss_pred             HHHHHHHCCCCEEEEEECCCCCCHHHHH
Q ss_conf             9987751666169999769874289999
Q gi|254780227|r  204 ISNERSATPRSLIIHEVMGRNCGWLTAY  231 (426)
Q Consensus       204 l~~~A~s~~~~~~iVEvMGR~aG~LAl~  231 (426)
                          +. +. .=.+.=++||++..|+-.
T Consensus        91 ----~i-~~-~~~~aiVFg~~~e~la~~  112 (138)
T pfam09001        91 ----AV-SN-AKTYAIVFGEHAEELAET  112 (138)
T ss_pred             ----HH-CC-CCEEEEEECCCHHHHHHH
T ss_conf             ----75-47-865899935887999998


No 128
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=52.04  E-value=17  Score=16.27  Aligned_cols=58  Identities=16%  Similarity=0.133  Sum_probs=33.7

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCC
Q ss_conf             379998368775148999999999999856997899983836601079913046269888874640787400
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPI  101 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~L  101 (426)
                      ++|-+-..-|=|.|..-+|.-+.+.+.. +.+..||-.    -=|+.|         ++.+..+...|=..+
T Consensus         1 MkI~lA~~~GFC~GV~rAi~~a~~~~~~-~~~~~vy~l----G~iVHN---------~~vv~~L~~~Gv~~v   58 (281)
T PRK12360          1 MNILIAKNAGFCFGVKRAIDTAYKEIEK-NDKKKIYTL----GPLIHN---------NQVVSDLEEKGVKVI   58 (281)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEE----CCCCCC---------HHHHHHHHHCCCEEE
T ss_conf             9799947998681499999999999997-699968983----777679---------899999997799798


No 129
>pfam00731 AIRC AIR carboxylase. Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.
Probab=51.84  E-value=17  Score=16.25  Aligned_cols=82  Identities=15%  Similarity=0.172  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECC-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             7456999999998639988999488-257899999999998518996288522223477222114633565999999999
Q gi|254780227|r  123 DENPLEVSAHHLMQSGVTILHTIGG-DDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFF  201 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~Id~Li~IGG-dgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i  201 (426)
                      .++.+...+++.++.+++.+|.+-| ...+.+.  ++-     .-.+||||||-.-       ++--|+|          
T Consensus        40 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpGv--vA~-----~T~~PVIgVP~~~-------~~l~G~d----------   95 (150)
T pfam00731        40 TPERLFEYAKEAEARGIKVIIAGAGGAAHLPGM--VAA-----LTTLPVIGVPVKS-------KALGGLD----------   95 (150)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH--HHH-----HCCCCEEECCCCC-------CCCCCHH----------
T ss_conf             878999999999975973999956842012000--176-----4799668577787-------7775454----------


Q ss_pred             HHHHHHHHHCCCCEEEEEECC----CCCCHHHHH
Q ss_conf             999987751666169999769----874289999
Q gi|254780227|r  202 DNISNERSATPRSLIIHEVMG----RNCGWLTAY  231 (426)
Q Consensus       202 ~~l~~~A~s~~~~~~iVEvMG----R~aG~LAl~  231 (426)
                       .|.++. .++..+-+ =+||    ++|+++|..
T Consensus        96 -sllS~v-qMP~Gvpv-atv~i~~~~NAallA~~  126 (150)
T pfam00731        96 -SLLSIV-QMPSGIPV-ATVAIGGAKNAALLAAQ  126 (150)
T ss_pred             -HHHHHH-CCCCCCCE-EEEECCCHHHHHHHHHH
T ss_conf             -599996-19999976-89865866669999999


No 130
>PRK08639 threonine dehydratase; Validated
Probab=51.44  E-value=17  Score=16.21  Aligned_cols=45  Identities=24%  Similarity=0.339  Sum_probs=31.5

Q ss_pred             HHHHHHHHC--CCCEEEE-ECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             999999863--9988999-48825789999999999851899628852222
Q gi|254780227|r  129 VSAHHLMQS--GVTILHT-IGGDDTNTTACDLLRYLKEKNYNITVVGLPKT  176 (426)
Q Consensus       129 ~~~~~l~~~--~Id~Li~-IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT  176 (426)
                      ...+-+++.  .+|++++ +||.|...+...   +++..+.++.||||=-.
T Consensus       166 iglEI~eq~~~~~D~vvvpvGGGGLiaGia~---~lK~~~P~ikIiGVEp~  213 (418)
T PRK08639        166 VAVEILEQLEEEPDYVFVPVGGGGLISGVTT---YLKEVSPKTKVIGVEPA  213 (418)
T ss_pred             HHHHHHHHCCCCCCEEEEEECCCHHHHHHHH---HHHHHCCCCEEEEEEEC
T ss_conf             9999998568878889996187368999999---99850999718998158


No 131
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=51.39  E-value=17  Score=16.20  Aligned_cols=50  Identities=22%  Similarity=0.235  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHCCCCE-EEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             999999998639988-99948825789999999999851899628852222
Q gi|254780227|r  127 LEVSAHHLMQSGVTI-LHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKT  176 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~-Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT  176 (426)
                      .+.+.+.+++-++|+ |-.+||.+.+..+..|.+...-..++++++|-+.+
T Consensus        59 ~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~e  109 (400)
T COG0458          59 KEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPE  109 (400)
T ss_pred             HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCHHHCCCEEEECCHH
T ss_conf             788999997537662632468741346889987726456449779945878


No 132
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=51.14  E-value=17  Score=16.18  Aligned_cols=58  Identities=21%  Similarity=0.218  Sum_probs=37.6

Q ss_pred             CCCCEEEEECCHHHHHH--HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             39988999488257899--999999998518996288522223477222114633565999999999999987751
Q gi|254780227|r  137 SGVTILHTIGGDDTNTT--ACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA  210 (426)
Q Consensus       137 ~~Id~Li~IGGdgS~~~--a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s  210 (426)
                      .+.|++++-||.|.--.  ...-.+|++++  +||..|             .|+||+.|+=..|.-+-.+ .+|.|
T Consensus        54 ~~~dgilvpgGFG~rG~eGki~Ai~yARen--~iPfLG-------------IClGmQ~aviE~ARnvlg~-~~A~s  113 (235)
T cd01746          54 KGADGILVPGGFGIRGVEGKILAIKYAREN--NIPFLG-------------ICLGMQLAVIEFARNVLGL-PDANS  113 (235)
T ss_pred             HCCCCEEECCCCCCCCHHHHHHHHHHHHHC--CCCEEE-------------EECCCCHHHHHHHHHHCCC-CCCCC
T ss_conf             306978957888877645889999999973--997254-------------4103432268999875299-77674


No 133
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=50.94  E-value=17  Score=16.16  Aligned_cols=40  Identities=15%  Similarity=0.118  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf             5699999999863-998899948825789999999999851
Q gi|254780227|r  125 NPLEVSAHHLMQS-GVTILHTIGGDDTNTTACDLLRYLKEK  164 (426)
Q Consensus       125 ~~~~~~~~~l~~~-~Id~Li~IGGdgS~~~a~~L~e~~~~~  164 (426)
                      +.++..++.+++. +++.+|+||=.||.-++..+.+.+...
T Consensus         5 ~~i~~f~~~i~~g~~~~~iv~iGiGGS~LG~k~l~~al~~~   45 (158)
T cd05015           5 ERIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPY   45 (158)
T ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             99999999997599888699981433389999999997624


No 134
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=49.80  E-value=18  Score=16.04  Aligned_cols=81  Identities=14%  Similarity=0.105  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHCCHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCC
Q ss_conf             88868999987332121034876337999836877514899999999999985699789998383660107991304626
Q gi|254780227|r    6 SYISNLDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITED   85 (426)
Q Consensus         6 ~~~~~~~~~~~~g~~~~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l   85 (426)
                      .|+|++=--+|...-.. ...  -.+|-.--+=|=|-|...||.-+.+++. .+++-.+|-..    =++.         
T Consensus        24 ~y~s~~i~~~~~~~~~~-~~g--~~~i~LA~~~GFC~GVeRAI~ia~ea~~-~~p~~~Iy~~g----eIIH---------   86 (392)
T PRK13371         24 AYQSSLIQSIRDNGYVL-QRG--DVTIKLAEAFGFCWGVERAVAMAYETRR-HFPDERIWITN----EIIH---------   86 (392)
T ss_pred             HHHHHHHHHHHHCCCEE-EEC--CEEEEEHHHCCCCCCHHHHHHHHHHHHH-HCCCCCEEEEC----CCCC---------
T ss_conf             88789999999749767-557--7799966546875358999999999998-68999789717----8746---------


Q ss_pred             CHHHHHHHHHCCCCCCCC
Q ss_conf             988887464078740033
Q gi|254780227|r   86 MRQNAEQLLSYGGSPIGN  103 (426)
Q Consensus        86 ~~~~v~~~~~~GGt~Lgt  103 (426)
                      ++..++.+...|=.++-.
T Consensus        87 Np~Vv~~L~~~Gv~~i~~  104 (392)
T PRK13371         87 NPSVNQHLREMGVKFIPV  104 (392)
T ss_pred             CHHHHHHHHHCCCEEEEC
T ss_conf             979999999779999624


No 135
>KOG3125 consensus
Probab=49.63  E-value=18  Score=16.03  Aligned_cols=93  Identities=13%  Similarity=0.078  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECC--CCC-CHHHHHHHHHCCCCCCC-HHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf             99999999987751666169999769--874-28999987401433231-011111110001457652328786559899
Q gi|254780227|r  197 SACFFDNISNERSATPRSLIIHEVMG--RNC-GWLTAYSAHCYLNMIQD-RNYIDGFIFSPDFKGIDGVYLPEMSFNLEV  272 (426)
Q Consensus       197 ~a~~i~~l~~~A~s~~~~~~iVEvMG--R~a-G~LAl~~ala~ga~~~~-i~~~~~~~~~~~~~~~d~iliPE~~~~~~~  272 (426)
                      -++++++++..+ ...+++.+++--+  |++ .-++.++++-.-...+- -++..+...+...+..|++.|-|..|- .+
T Consensus        41 Tt~LLrr~r~~~-~~grrv~liK~~kDTRy~~~si~Thdg~~~~c~~lp~a~~~s~f~~d~~~~~vdVigIDEaQFf-~d  118 (234)
T KOG3125          41 TTELLRRIRREI-IAGRRVLLIKYAKDTRYESSSIVTHDGIEMPCWALPDASFLSEFGKDALNGDVDVIGIDEAQFF-GD  118 (234)
T ss_pred             HHHHHHHHHHHH-HCCCEEEEEEECCCCCCCHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECHHHHH-HH
T ss_conf             689999999987-5185699997567752111105732587564011678436778778875583109984278874-89


Q ss_pred             HHHHHHHHHHCCCCEEEEE
Q ss_conf             9999999850289538995
Q gi|254780227|r  273 EIERLSKVMEKKGSVAIFV  291 (426)
Q Consensus       273 ~~~~i~~~~~~~~~~vIVv  291 (426)
                      +.+..++..+.+|..|||-
T Consensus       119 l~efc~evAd~~Gk~Viva  137 (234)
T KOG3125         119 LYEFCREVADVHGKTVIVA  137 (234)
T ss_pred             HHHHHHHHHHCCCCEEEEE
T ss_conf             9999999874149789999


No 136
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria.  The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=49.15  E-value=18  Score=15.98  Aligned_cols=24  Identities=13%  Similarity=-0.251  Sum_probs=14.3

Q ss_pred             EECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf             976987428999987401433231
Q gi|254780227|r  219 EVMGRNCGWLTAYSAHCYLNMIQD  242 (426)
Q Consensus       219 EvMGR~aG~LAl~~ala~ga~~~~  242 (426)
                      =.||...---++.-+||-|||.++
T Consensus        58 lsvGp~~a~~~Lr~alAmGaD~ai   81 (202)
T cd01714          58 VSMGPPQAEEALREALAMGADRAI   81 (202)
T ss_pred             EEECCHHHHHHHHHHHHHCCCEEE
T ss_conf             993747889999999970898359


No 137
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=49.09  E-value=18  Score=15.97  Aligned_cols=115  Identities=16%  Similarity=0.166  Sum_probs=66.9

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC-CCCCCCCCCC
Q ss_conf             379998368775148999999999999856997899983836601079913046269888874640787-4003367888
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG-SPIGNSRVKL  108 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG-t~LgtsR~~~  108 (426)
                      +||+|.+  |.++| +..-.++++.++..+++.+.+|+- | +.+-......+     -+.+.+.-+|. -.|+.=.   
T Consensus         2 ~ki~i~A--GE~SG-DllGa~LikaLk~~~~~~efvGvg-G-~~m~aeG~~sl-----~~~~elsvmGf~EVL~~lp---   68 (381)
T COG0763           2 LKIALSA--GEASG-DLLGAGLIKALKARYPDVEFVGVG-G-EKMEAEGLESL-----FDMEELSVMGFVEVLGRLP---   68 (381)
T ss_pred             CEEEEEE--CCCCH-HHHHHHHHHHHHHHCCCEEEEEEC-C-HHHHHCCCCCC-----CCHHHHHHHHHHHHHHHHH---
T ss_conf             4599990--44431-146899999998638983899817-6-78886557655-----5889987822999999889---


Q ss_pred             CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             65301110123456745699999999863998899948825789999999999851899628852
Q gi|254780227|r  109 TNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL  173 (426)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi  173 (426)
                                   .--......++++.+.+.|.+|.|   ||..--..++..+++.+..+++|+-
T Consensus        69 -------------~llk~~~~~~~~i~~~kpD~~i~I---DsPdFnl~vak~lrk~~p~i~iihY  117 (381)
T COG0763          69 -------------RLLKIRRELVRYILANKPDVLILI---DSPDFNLRVAKKLRKAGPKIKIIHY  117 (381)
T ss_pred             -------------HHHHHHHHHHHHHHHCCCCEEEEE---CCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf             -------------999999999999985599889996---7898864999999970899986999


No 138
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=48.37  E-value=19  Score=15.90  Aligned_cols=75  Identities=8%  Similarity=0.017  Sum_probs=40.4

Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999998639988999488257899999999998518996288522223477222114633565999999999999987
Q gi|254780227|r  128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNE  207 (426)
Q Consensus       128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~  207 (426)
                      ...++.+...++|++|+...+....      + ..  ..++|+|.+-.....+++    +++.|-. .....+++.+.. 
T Consensus        45 ~~~l~~l~~~~vDGiI~~~~~~~~~------~-~~--~~~iPvV~~d~~~~~~~~----~V~~Dn~-~~~~~a~~~L~~-  109 (265)
T cd06291          45 REYLEMLRQNQVDGIIAGTHNLGIE------E-YE--NIDLPIVSFDRYLSENIP----IVSSDNY-EGGRLAAEELIE-  109 (265)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCHH------H-HH--HCCCCEEEEECCCCCCCC----EEEECHH-HHHHHHHHHHHH-
T ss_conf             9999999856998587417884099------9-99--779999997055799999----8997769-999999999997-


Q ss_pred             HHHCCCCEEEEE
Q ss_conf             751666169999
Q gi|254780227|r  208 RSATPRSLIIHE  219 (426)
Q Consensus       208 A~s~~~~~~iVE  219 (426)
                       .. |+++.++-
T Consensus       110 -~G-hr~I~~i~  119 (265)
T cd06291         110 -RG-CKHIAHIG  119 (265)
T ss_pred             -CC-CCEEEEEE
T ss_conf             -39-96499996


No 139
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=48.33  E-value=19  Score=15.90  Aligned_cols=29  Identities=21%  Similarity=0.177  Sum_probs=13.0

Q ss_pred             HHHHHHHCCHHHCCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf             999987332121034876337999836877514899
Q gi|254780227|r   11 LDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSS   46 (426)
Q Consensus        11 ~~~~~~~g~~~~~~~~~~~krI~IltsGG~aPG~N~   46 (426)
                      .+.||+......       --+.|+--||.+--+.+
T Consensus       121 Ik~~I~~~a~~~-------~DvvivEIGGTVGDIEs  149 (533)
T COG0504         121 IKDRIREAADST-------ADVVIVEIGGTVGDIES  149 (533)
T ss_pred             HHHHHHHHCCCC-------CCEEEEEECCCEECCCC
T ss_conf             999999825788-------88899981771222233


No 140
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=48.32  E-value=19  Score=15.90  Aligned_cols=43  Identities=19%  Similarity=0.369  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             99999999863998899948825789999999999851899628852
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL  173 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi  173 (426)
                      -+.++..|.+ ..|.+++|||-.|-.+. +|++.+++.+  .+...|
T Consensus       196 RQ~a~~~LA~-~vD~miVVGG~nSSNT~-rL~eia~~~~--~~ty~I  238 (670)
T PRK00087        196 RQEAAEKLAK-KVDVMIVVGGKNSSNTT-KLYEICKSNC--TNTIHI  238 (670)
T ss_pred             HHHHHHHHHH-HCCEEEEECCCCCHHHH-HHHHHHHHHC--CCEEEE
T ss_conf             9999999986-59999998998972599-9999999779--998996


No 141
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=48.04  E-value=19  Score=15.87  Aligned_cols=48  Identities=13%  Similarity=0.200  Sum_probs=26.2

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             745699999999863998899948825789999999999851899628852
Q gi|254780227|r  123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL  173 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi  173 (426)
                      +.+-++.+.+...+.+. .++.+||..  ..+.++.+.++++..+++|+|.
T Consensus        31 G~dl~~~ll~~~~~~~~-~v~llG~~~--~~~~~~~~~l~~~yp~l~i~g~   78 (171)
T cd06533          31 GSDLMPALLELAAQKGL-RVFLLGAKP--EVLEKAAERLRARYPGLKIVGY   78 (171)
T ss_pred             HHHHHHHHHHHHHHCCC-EEEEEECCH--HHHHHHHHHHHHHCCCCEEEEE
T ss_conf             19999999999986497-499980898--9999999999978899379998


No 142
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=47.97  E-value=19  Score=15.86  Aligned_cols=41  Identities=15%  Similarity=0.117  Sum_probs=24.5

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC----HHHCCCCC
Q ss_conf             3799983687751489999999999998569978999838----36601079
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRF----GYQGLLLD   77 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~----G~~GL~~~   77 (426)
                      +||.|+=|||=   =|+..|.+.+    .....+||.+.+    |..++.++
T Consensus         1 MkVLVIGsGGR---EHAla~kl~~----Sp~v~~l~~aPGn~NpG~~~~a~~   45 (485)
T PRK05784          1 MKVLLVGDGAR---EHAIAEALAK----SPKGYRIYALSSHLNPGIEEIVKK   45 (485)
T ss_pred             CEEEEECCCHH---HHHHHHHHHC----CCCCCEEEEEECCCCCCHHHHHHH
T ss_conf             98999898889---9999999960----989898999738987525677642


No 143
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a 
Probab=47.33  E-value=20  Score=15.80  Aligned_cols=51  Identities=18%  Similarity=0.065  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             56999999998639988999488257899999999998518996288522223477
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND  180 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND  180 (426)
                      +.....++.|.+.++|++|+.+.+.+......+.+   .  .++|+|.+-..+++.
T Consensus        42 ~~e~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~~~---~--~~iPvV~id~~~~~~   92 (269)
T cd06275          42 ERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLER---Y--RHIPMVVMDWGPEDD   92 (269)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH---H--CCCCEEEECCCCCCC
T ss_conf             99999999999569999999368898378999998---2--899889984678889


No 144
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=47.26  E-value=20  Score=15.79  Aligned_cols=159  Identities=17%  Similarity=0.159  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-CC
Q ss_conf             2688888689999873321210348763379998-368775148999999999999856997899983836601079-91
Q gi|254780227|r    2 VEFLSYISNLDMWILTGVLSFLEKDMVAHKVAFL-TAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLD-DK   79 (426)
Q Consensus         2 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~krI~Il-tsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~-~~   79 (426)
                      |+.++-+..+..|.+.     .    .-+.||.+ |-|+    +|.-=.++++.|... ++..|.-+.=-..-+-.+ ++
T Consensus         1 M~i~~t~~el~~~~~~-----~----~~~~ig~VPTMG~----LH~GHlsLi~~A~~~-~d~vvvSIFVNP~QF~~~eD~   66 (512)
T PRK13477          1 MRILRTVAGLRTWLRN-----Q----RSETIGFVPTMGA----LHQGHLSLIRRARQE-NDVVLVSIFVNPLQFGPNEDL   66 (512)
T ss_pred             CEEECCHHHHHHHHHH-----H----CCCEEEEECCCCH----HHHHHHHHHHHHHHH-CCEEEEEEEECCCCCCCCHHH
T ss_conf             9476659999999998-----3----7994899889723----758999999999986-996999972787778986457


Q ss_pred             EECCCCCHHHHHHHHHCCCCCCCCCCCC------------------CCCCCHHHHCCCCCCCHHHHHHHHHHHHHC-C-C
Q ss_conf             3046269888874640787400336788------------------865301110123456745699999999863-9-9
Q gi|254780227|r   80 ITITEDMRQNAEQLLSYGGSPIGNSRVK------------------LTNFSDCIKRGLIKKDENPLEVSAHHLMQS-G-V  139 (426)
Q Consensus        80 ~~l~~l~~~~v~~~~~~GGt~LgtsR~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-I  139 (426)
                      ..--.....+...+...|-+++-.....                  +...-++.      ..+.+++-++..+.++ + +
T Consensus        67 ~~YPr~~~~D~~ll~~~gvd~vf~P~~~emYp~~~~~~~~~~~~~~l~~~l~G~------~RpghF~GV~Tvv~kLf~iv  140 (512)
T PRK13477         67 ERYPRTLEADRELCESAGVDAIFAPSPEELYPGGAKSITQVQPPAELTSHLCGA------SRPGHFDGVATVVTRLLNLV  140 (512)
T ss_pred             HHCCCCHHHHHHHHHHCCCCEEECCCHHHCCCCCCCCEEEECCCCCCCHHHCCC------CCCCHHHHHHHHHHHHHHHC
T ss_conf             767999899999999689999988988980899998717981663112344177------68506778999999999636


Q ss_pred             CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             88999488257899999999998518996288522223477
Q gi|254780227|r  140 TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND  180 (426)
Q Consensus       140 d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND  180 (426)
                      .-=...=|.--++....+.+..++.++++.|+++|--=+.|
T Consensus       141 ~P~~a~fGeKD~QQl~vIk~mv~dl~~~v~i~~~ptvRe~d  181 (512)
T PRK13477        141 QPKRAYFGEKDWQQLAIIRRLVADLNLPVTIVGCPTVREAD  181 (512)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCEECCC
T ss_conf             99989982322879999999999719993899708637899


No 145
>PHA00447 lysozyme
Probab=47.20  E-value=20  Score=15.79  Aligned_cols=36  Identities=17%  Similarity=0.053  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf             899999999998518996288522223477222114633565
Q gi|254780227|r  151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALT  192 (426)
Q Consensus       151 ~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdT  192 (426)
                      +++...|-..+..+.....|+|     .||+..+. |||||-
T Consensus        99 ~~al~~Li~~L~~~yp~~~I~G-----Hrd~~~k~-CPgFdv  134 (142)
T PHA00447         99 MQSLKSLLVTLLAKYPGAEIRA-----HHDVAPKA-CPSFDL  134 (142)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEE-----CCCCCCCC-CCCCCH
T ss_conf             9999999999999889987981-----15889988-979668


No 146
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=47.07  E-value=20  Score=15.77  Aligned_cols=78  Identities=9%  Similarity=-0.120  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999863998899948825789999999999851899628852222347722211463356599999999999998
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN  206 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~  206 (426)
                      ....++.|...++|++|+.+-..+......+.    +.  + |+|.+-++-+-+++    ++++|-. +...++++.+. 
T Consensus        44 e~~~l~~l~~~~vdGiIi~~~~~~~~~i~~~~----~~--~-pvV~~~~~~~~~~~----~V~~Dn~-~~~~~~~~~L~-  110 (260)
T cd06286          44 ELEYLELLKTKQVDGLILCSRENDWEVIEPYT----KY--G-PIVLCEEYDSKNIS----SVYIDHY-EAFYEALKYLI-  110 (260)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH----HC--C-CEEEEECCCCCCCC----EEEECHH-HHHHHHHHHHH-
T ss_conf             99999999847999999936879989999998----64--9-99999577889999----8997869-99999999999-


Q ss_pred             HHHHCCCCEEEEE
Q ss_conf             7751666169999
Q gi|254780227|r  207 ERSATPRSLIIHE  219 (426)
Q Consensus       207 ~A~s~~~~~~iVE  219 (426)
                      + .. |+++.++.
T Consensus       111 ~-~G-~~~i~~i~  121 (260)
T cd06286         111 Q-KG-YRKIAYCI  121 (260)
T ss_pred             H-CC-CCEEEEEE
T ss_conf             7-59-97399993


No 147
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor 
Probab=46.61  E-value=20  Score=15.73  Aligned_cols=117  Identities=7%  Similarity=0.003  Sum_probs=62.9

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             99983687751489999999999998569978999838366010799130462698888746407874003367888653
Q gi|254780227|r   32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNF  111 (426)
Q Consensus        32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~  111 (426)
                      ||++..-=.-|=...++.++-+.+...  |++++-..       .++                                 
T Consensus         2 IGvivp~i~npff~~l~~gi~~~~~~~--GY~~ll~~-------~~~---------------------------------   39 (261)
T cd06272           2 IGLIWPSVSRVALTELVTGINQAISKN--GYNMNVSI-------TPS---------------------------------   39 (261)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEEE-------CCC---------------------------------
T ss_conf             899977987589999999999999984--99899996-------898---------------------------------


Q ss_pred             CHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf             01110123456745699999999863998899948825789999999999851899628852222347722211463356
Q gi|254780227|r  112 SDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGAL  191 (426)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfd  191 (426)
                                     .....+.+.++.+|++|+.+-..+-.....+.      ..++|+|.+=...+.+++    +++.|
T Consensus        40 ---------------~~~~~~~l~~~~vDGiIi~~~~~~~~~~~~~~------~~~iPvV~~~~~~~~~~~----~V~~D   94 (261)
T cd06272          40 ---------------LAEAEDLFKENRFDGVIIFGESASDVEYLYKI------KLAIPVVSYGVDYDLKYP----IVNVD   94 (261)
T ss_pred             ---------------HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH------HCCCCEEEECCCCCCCCC----EEEEC
T ss_conf             ---------------59999999967998999978989979999997------489939998367899998----99968


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             5999999999999987751666169999
Q gi|254780227|r  192 TAAQVSACFFDNISNERSATPRSLIIHE  219 (426)
Q Consensus       192 TA~~~~a~~i~~l~~~A~s~~~~~~iVE  219 (426)
                      -. ....++++.+..  .. |+++.++-
T Consensus        95 n~-~~~~~a~~~L~~--~G-~~~i~~i~  118 (261)
T cd06272          95 NE-KAMELAVLYLAE--KG-HKKIAYIG  118 (261)
T ss_pred             HH-HHHHHHHHHHHH--CC-CCCEEEEC
T ss_conf             89-999999999998--69-98289966


No 148
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=46.54  E-value=20  Score=15.72  Aligned_cols=80  Identities=9%  Similarity=0.005  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-CCCCHHHHHHHHHHHHHH
Q ss_conf             5699999999863998899948825789999999999851899628852222347722211-463356599999999999
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH-QSLGALTAAQVSACFFDN  203 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td-~tiGfdTA~~~~a~~i~~  203 (426)
                      +.....++.|.++++|++|+.+...+-.....|.    +  .++|+|-+=...++    .+ .++++|-. ....++++.
T Consensus        42 ~~e~~~i~~l~~~~vDGiI~~~~~~~~~~~~~l~----~--~~~PvV~i~~~~~~----~~~~~V~~Dn~-~~~~~a~~~  110 (268)
T cd06298          42 EKELKVLNNLLAKQVDGIIFMGGKISEEHREEFK----R--SPTPVVLAGSVDED----NELPSVNIDYK-KAAFEATEL  110 (268)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH----H--CCCCEEEECCCCCC----CCCCEEEECHH-HHHHHHHHH
T ss_conf             9999999999966999999826779999999999----6--69989995775789----99878984889-999999999


Q ss_pred             HHHHHHHCCCCEEEE
Q ss_conf             998775166616999
Q gi|254780227|r  204 ISNERSATPRSLIIH  218 (426)
Q Consensus       204 l~~~A~s~~~~~~iV  218 (426)
                      +..  .. |+++.++
T Consensus       111 L~~--~G-~~~I~~i  122 (268)
T cd06298         111 LIK--NG-HKKIAFI  122 (268)
T ss_pred             HHH--CC-CCEEEEE
T ss_conf             997--29-9669999


No 149
>TIGR01975 isoAsp_dipep beta-aspartyl peptidase; InterPro: IPR010229   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of proteins include metallopeptidases belonging to the MEROPS peptidase family M38 (clan MJ, beta-aspartyl dipeptidase family). This entry includes the beta-aspartyl dipeptidase from Escherichia coli, (3.4.19.5 from EC, IadA), which degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This entry also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that may have an equivalent in function. This family shows homology to dihydroorotases. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerisation, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase..
Probab=46.31  E-value=20  Score=15.70  Aligned_cols=46  Identities=24%  Similarity=0.429  Sum_probs=34.9

Q ss_pred             HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf             9999998639988999488257899999999998518996288522223477222114633565
Q gi|254780227|r  129 VSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALT  192 (426)
Q Consensus       129 ~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdT  192 (426)
                      +-++.|++-||.+.++.|-                  |++|+=-+=+||..||..+|.=||..-
T Consensus       112 AKArAL~eEGvs~y~ltGa------------------Y~vP~~TlTgsv~sDl~LIDkvIGvGe  157 (391)
T TIGR01975       112 AKARALEEEGVSCYVLTGA------------------YEVPVRTLTGSVKSDLLLIDKVIGVGE  157 (391)
T ss_pred             HHHHHHHHCCEEEEEEECC------------------EECCCCCCCCCEEEEEEEEEEEEEEEE
T ss_conf             9998652078269996333------------------135520015112432678833554245


No 150
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=45.32  E-value=21  Score=15.60  Aligned_cols=46  Identities=11%  Similarity=0.158  Sum_probs=28.7

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCE-EEEECCHHHCCCCCC
Q ss_conf             33799983687751489999999999998569978-999838366010799
Q gi|254780227|r   29 AHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAE-LIYYRFGYQGLLLDD   78 (426)
Q Consensus        29 ~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~-v~G~~~G~~GL~~~~   78 (426)
                      .+||.++..|- .-=+|..+ ++.+.+..  +|++ +|.....|..+++.-
T Consensus         1 ~mkil~~~~~~-~Ghv~p~~-aL~~eL~~--~gheV~~~~~~~~~~~ve~a   47 (406)
T COG1819           1 RMKILFVVCGA-YGHVNPCL-ALGKELRR--RGHEVVFASTGKFKEFVEAA   47 (406)
T ss_pred             CCEEEEEECCC-CCCHHHHH-HHHHHHHH--CCCEEEEEECHHHHHHHHHH
T ss_conf             95799981776-43226669-99999997--69749997377899999983


No 151
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily subfamily IIA hydrolase, TIGR01459; InterPro: IPR006356   These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are restricted to the Gram-negative and primarily alpha proteobacteria. Only one sequence has been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some scepticism..
Probab=45.18  E-value=21  Score=15.59  Aligned_cols=60  Identities=12%  Similarity=-0.053  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCC
Q ss_conf             999999987187431884188612355898--679999999999999999779986699998598699643089852688
Q gi|254780227|r  329 WFADKFANMIKAERSIVQKSGYFARSAPSG--SEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGR  406 (426)
Q Consensus       329 ~La~~i~~~~~~~~~~~~~lGy~qRgg~Ps--~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k  406 (426)
                      ++|+++++..|          -..|.|.|-  .||..+         ..+-+-..+.|+.+-+ ..     . .+|.+.+
T Consensus       179 ~~Ael~~~lGG----------~Vi~~GKPypaif~~al---------~~~~~~~~~~~l~vGD-s~-----~-tDi~gan  232 (243)
T TIGR01459       179 ELAELYKELGG----------KVIYVGKPYPAIFDKAL---------KELEEREKRRVLFVGD-SL-----V-TDIAGAN  232 (243)
T ss_pred             HHHHHHHHCCC----------EEEEECCCCHHHHHHHH---------HHHCCCCCCEEEEEEC-CH-----H-HHHHHHH
T ss_conf             45787876298----------79970498789999999---------9742788864899807-06-----7-7666666


Q ss_pred             CCCCCHHH
Q ss_conf             20777589
Q gi|254780227|r  407 VFDTNTPW  414 (426)
Q Consensus       407 ~vd~~~~~  414 (426)
                      .+-+++.|
T Consensus       233 ~~gidtal  240 (243)
T TIGR01459       233 AVGIDTAL  240 (243)
T ss_pred             HHHHHHHH
T ss_conf             78788886


No 152
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=44.94  E-value=21  Score=15.56  Aligned_cols=127  Identities=13%  Similarity=0.042  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             56999999998639988999488257899999999998518996288522223477-22211463356599999999999
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND-IIPIHQSLGALTAAQVSACFFDN  203 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND-i~~td~tiGfdTA~~~~a~~i~~  203 (426)
                      +..+.+.+.+....+|++|+.+-..+-.....|.    +  .++|+|.+-.+.+.. .+    +++.|- ..-..++++.
T Consensus        46 ~~~~~~~~~l~~~~vDGiIl~~~~~~~~~~~~l~----~--~~iP~V~~~r~~~~~~~~----~V~~Dn-~~~~~~a~~~  114 (268)
T cd06271          46 DPLEVYRRLVESGLVDGVIISRTRPDDPRVALLL----E--RGFPFVTHGRTELGDPHP----WVDFDN-EAAAYQAVRR  114 (268)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH----H--CCCCEEEECCCCCCCCCC----EEEECH-HHHHHHHHHH
T ss_conf             9999999999848988899967889819999999----7--799999976656899996----899576-9999999999


Q ss_pred             HHHHHHHCCCCEEEEEECC-------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             9987751666169999769-------874289999874014332310111111100014576523287865598999999
Q gi|254780227|r  204 ISNERSATPRSLIIHEVMG-------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIER  276 (426)
Q Consensus       204 l~~~A~s~~~~~~iVEvMG-------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~  276 (426)
                      +. + .. |+++.++--.-       |..||..+...                    .+..++..++-+..++.+.-.+.
T Consensus       115 L~-~-~G-~~~I~~i~~~~~~~~~~~R~~Gf~~al~~--------------------~gl~~~~~~~~~~~~~~~~~~~~  171 (268)
T cd06271         115 LI-A-LG-HRRIALLNPPEDLTFAQHRRAGYRRALAE--------------------AGLPLDPALIVSGDMTEEGGYAA  171 (268)
T ss_pred             HH-H-HC-CCEEEECCCCCCCHHHHHHHHHHHHHHHH--------------------CCCCCCCCEEEECCCCHHHHHHH
T ss_conf             99-8-59-87487548875460799999999999998--------------------39997711365068757779999


Q ss_pred             HHHHHHCCC
Q ss_conf             999850289
Q gi|254780227|r  277 LSKVMEKKG  285 (426)
Q Consensus       277 i~~~~~~~~  285 (426)
                      +++.++.+.
T Consensus       172 ~~~ll~~~~  180 (268)
T cd06271         172 AAELLALPD  180 (268)
T ss_pred             HHHHHHCCC
T ss_conf             999996599


No 153
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase.  These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=43.86  E-value=22  Score=15.46  Aligned_cols=21  Identities=10%  Similarity=-0.029  Sum_probs=13.2

Q ss_pred             HHHHCCCCEEEEECCHHHHHH
Q ss_conf             998639988999488257899
Q gi|254780227|r  133 HLMQSGVTILHTIGGDDTNTT  153 (426)
Q Consensus       133 ~l~~~~Id~Li~IGGdgS~~~  153 (426)
                      .++..+.|++|.-||-|+-..
T Consensus        37 ~~~~~~~~giiLS~GPg~p~~   57 (184)
T cd01743          37 ELELLNPDAIVISPGPGHPED   57 (184)
T ss_pred             HHHHCCCCEEEECCCCCCHHH
T ss_conf             997329799999999989256


No 154
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=43.58  E-value=22  Score=15.43  Aligned_cols=69  Identities=13%  Similarity=0.188  Sum_probs=35.1

Q ss_pred             CCHHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             6745699999999863998---89994882578999999999985189962885222234772221146335659999
Q gi|254780227|r  122 KDENPLEVSAHHLMQSGVT---ILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQV  196 (426)
Q Consensus       122 ~~~~~~~~~~~~l~~~~Id---~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~  196 (426)
                      ++-+.++++.+.|-+++++   .+|.+||-=.-.-+--.+..+   .-+|+.|.||-|.   +.-+|.|+|--|++|+
T Consensus       218 Ksl~~~~~~~~~l~~~g~~R~~~ivalGGGvvgDl~GF~Ast~---~RGi~~i~iPTTL---La~VDssvGGKtgIN~  289 (488)
T PRK13951        218 KTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTF---KRGVGLSFYPTTL---LAQVDASVGGKNAIDF  289 (488)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHH---HCCCCEEECCCHH---HHHHHHHCCCCEEEEC
T ss_conf             7899999999999976999675599978828878899999999---6499878754059---9877630256605768


No 155
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=43.01  E-value=23  Score=15.37  Aligned_cols=41  Identities=12%  Similarity=0.101  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCC
Q ss_conf             56999999998639988999488257899999999998518
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKN  165 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~  165 (426)
                      +.+.++++-|++.+||.|+.+||.--+.++..++..+...+
T Consensus        72 ~Tv~kaV~i~kee~idflLAVGGGSViD~tK~IAa~a~y~G  112 (384)
T COG1979          72 ETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIAAAAKYDG  112 (384)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf             99999999999739639999568420011778874354689


No 156
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=42.71  E-value=23  Score=15.35  Aligned_cols=126  Identities=17%  Similarity=0.081  Sum_probs=68.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r   31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN  110 (426)
Q Consensus        31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~  110 (426)
                      |||++...-.-|=-..++.|+-+.+..  .|++++-..-      ++                                 
T Consensus         1 kIgvivp~~~~pf~~~~~~gi~~~a~~--~g~~~~~~~~------~~---------------------------------   39 (267)
T cd01536           1 KIGLVVPSLNNPFWQAMNKGAEAAAKE--LGVELIVLDA------QN---------------------------------   39 (267)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHH--CCCEEEEEEC------CC---------------------------------
T ss_conf             999996899898999999999999998--4999999969------99---------------------------------


Q ss_pred             CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCCC
Q ss_conf             30111012345674569999999986399889994882578999999999985189962885222234772221--1463
Q gi|254780227|r  111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPI--HQSL  188 (426)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~t--d~ti  188 (426)
                                  +.+.....++.+.+.++|++++..-+...... .+ +.+.+  .+||+|.+    |++++..  ..++
T Consensus        40 ------------~~~~e~~~i~~~~~~~vdgiI~~~~~~~~~~~-~~-~~~~~--~~iPvV~~----d~~~~~~~~~~~V   99 (267)
T cd01536          40 ------------DVSKQIQQIEDLIAQGVDGIIISPVDSAALTP-AL-KKANA--AGIPVVTV----DSDIDGGNRLAYV   99 (267)
T ss_pred             ------------CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH-HH-HHHHH--CCCCEEEE----ECCCCCCCCCEEE
T ss_conf             ------------99999999999997599999993158415589-99-99998--79969998----2566788864599


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             3565999999999999987751666169999
Q gi|254780227|r  189 GALTAAQVSACFFDNISNERSATPRSLIIHE  219 (426)
Q Consensus       189 GfdTA~~~~a~~i~~l~~~A~s~~~~~~iVE  219 (426)
                      +.|--- ....+.+.+..-. .-++++.++.
T Consensus       100 ~~D~~~-~g~~a~~~L~~~~-~g~~~i~~i~  128 (267)
T cd01536         100 GTDNYE-AGRLAGEYLAKLL-GGKGKVAIIE  128 (267)
T ss_pred             ECCHHH-HHHHHHHHHHHHC-CCCCEEEEEC
T ss_conf             628899-9999999999974-9994799954


No 157
>KOG3857 consensus
Probab=42.61  E-value=23  Score=15.34  Aligned_cols=53  Identities=13%  Similarity=0.192  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC--------C-----------CCCEEEEECCC
Q ss_conf             45699999999863998899948825789999999999851--------8-----------99628852222
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEK--------N-----------YNITVVGLPKT  176 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~--------~-----------~~i~vigiPKT  176 (426)
                      ...+..+++-.++.+.|.++.|||.-.+.+|...+-+...-        +           .-.|.|.||-|
T Consensus       113 v~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~Asn~~~eflDyvg~pigk~~~~s~p~lPLiAipTT  184 (465)
T KOG3857         113 VGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLASNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPTT  184 (465)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf             234999999987336655898768504556888988602887630002378666666555555634750257


No 158
>PRK10992 cell morphogenesis/cell wall metabolism regulator; Provisional
Probab=42.45  E-value=17  Score=16.13  Aligned_cols=27  Identities=15%  Similarity=0.212  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             99999999863998899948825789999
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTAC  155 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~  155 (426)
                      ..+..+.+++++||  +|+||+-|+.-|.
T Consensus        15 ~p~aa~vF~~~gID--FCCgG~~~L~eA~   41 (220)
T PRK10992         15 IPRATALFREYDLD--FCCGGKQTLARAA   41 (220)
T ss_pred             CCCHHHHHHHCCCC--CCCCCCHHHHHHH
T ss_conf             96689999994982--3089974899999


No 159
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain.  The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=42.10  E-value=24  Score=15.29  Aligned_cols=124  Identities=15%  Similarity=0.148  Sum_probs=68.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r   31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN  110 (426)
Q Consensus        31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~  110 (426)
                      +||++...-.-|=...++.|+-+.+...  |++++-+..      ++                                 
T Consensus         1 tIgvi~p~~~~~f~~~~~~gi~~~a~~~--gy~~~~~~~------~~---------------------------------   39 (264)
T cd01537           1 TIGVLVPDLDNPFFAQVLKGIEEAAKAA--GYQVLLANS------QN---------------------------------   39 (264)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEEEC------CC---------------------------------
T ss_conf             9899978897799999999999999986--998999979------99---------------------------------


Q ss_pred             CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCH
Q ss_conf             30111012345674569999999986399889994882578999999999985189962885222234772221146335
Q gi|254780227|r  111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGA  190 (426)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGf  190 (426)
                                  +.+.....++.+.+.++|++++.+-+.+....   .+.+.+  .++|+|.+-..++.+-.  ..++++
T Consensus        40 ------------~~~~~~~~i~~~~~~~vDgiIi~~~~~~~~~~---~~~~~~--~~ipvV~~~~~~~~~~~--~~~V~~  100 (264)
T cd01537          40 ------------DAEKQLSALENLIARGVDGIIIAPSDLTAPTI---VKLARK--AGIPVVLVDRDIPDGDR--VPSVGS  100 (264)
T ss_pred             ------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH---HHHHHH--CCCCEEEECCCCCCCCC--CEEEEE
T ss_conf             ------------98999999999997699999996798886899---999997--59979998566788888--719997


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             6599999999999998775166616999
Q gi|254780227|r  191 LTAAQVSACFFDNISNERSATPRSLIIH  218 (426)
Q Consensus       191 dTA~~~~a~~i~~l~~~A~s~~~~~~iV  218 (426)
                      |.. .....+.+.+. + .. ++++.++
T Consensus       101 d~~-~~g~~~~~~l~-~-~g-~~~i~~i  124 (264)
T cd01537         101 DNE-QAGYLAGEHLA-E-KG-HRRIALL  124 (264)
T ss_pred             CHH-HHHHHHHHHHH-H-CC-CCCEEEC
T ss_conf             779-99999999998-6-29-8624530


No 160
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=42.09  E-value=24  Score=15.28  Aligned_cols=47  Identities=15%  Similarity=0.001  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             69999999986399889994882578999999999985189962885222234
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTID  178 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTID  178 (426)
                      .....++.+...++|++|+..=..+-.....+.    +  .++|+|.+-.+.+
T Consensus        43 ~e~~~i~~l~~~~vDgiIl~~~~~~~~~~~~~~----~--~~iPvV~i~~~~~   89 (267)
T cd06283          43 KEKEYLESLLAYQVDGLIVNPTGNNKELYQRLA----K--NGKPVVLVDRKIP   89 (267)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH----H--CCCCEEEECCCCC
T ss_conf             999999999966999999858779989999999----7--6998999688578


No 161
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009    The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=42.08  E-value=24  Score=15.28  Aligned_cols=128  Identities=15%  Similarity=0.099  Sum_probs=74.9

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCE--EEEECCHHH-CCCC-CCCEECCCCCHHHHHHHHHCC-CCCC
Q ss_conf             7633799983687751489999999999998569978--999838366-0107-991304626988887464078-7400
Q gi|254780227|r   27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAE--LIYYRFGYQ-GLLL-DDKITITEDMRQNAEQLLSYG-GSPI  101 (426)
Q Consensus        27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~--v~G~~~G~~-GL~~-~~~~~l~~l~~~~v~~~~~~G-Gt~L  101 (426)
                      |..+..-|+.+||=+-|+=++++ +.+++.+..+.++  .+|-.+|.+ .|.+ ...+++..++   +..+.+.+ ...+
T Consensus         1 ~~~~~~~~~~~gGGTGG~fPAlA-~a~~l~~~~~~~~v~~lG~~~g~e~~lv~~~~~~~~~~i~---~~gl~~~~~~~~~   76 (368)
T TIGR01133         1 MMNKMKKVALAGGGTGGIFPALA-VAEELIKRGPEVEVVWLGTKRGLEERLVPSKEGIEFLTIP---VGGLRRKGSKKLL   76 (368)
T ss_pred             CCCCCEEEEEECCCCCHHHHHHH-HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE---ECCCCCCCCHHHH
T ss_conf             99882289997278302689999-9999997489369998506775000034321574177774---0100365510146


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCC
Q ss_conf             336788865301110123456745699999999863998899948825789999999999851899-6288522223477
Q gi|254780227|r  102 GNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYN-ITVVGLPKTIDND  180 (426)
Q Consensus       102 gtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~-i~vigiPKTIDND  180 (426)
                      .+...               .--.-+-++.+.|+++.-|.++-.||.=|.=....-      ..++ ||+|    +-.|=
T Consensus        77 ~~~~~---------------~~~~~~~~a~~~l~~~~p~~v~G~GGY~s~P~~~AA------~l~g~iP~~----~EQN~  131 (368)
T TIGR01133        77 KLPLL---------------KLLKAVLQARRILKKFKPDVVVGFGGYVSGPAGLAA------KLLGRIPLI----LEQNA  131 (368)
T ss_pred             HHHHH---------------HHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH------HHCCCCCEE----EEECC
T ss_conf             78899---------------999999999999860087479874736789999998------766799489----86154


Q ss_pred             CCC
Q ss_conf             222
Q gi|254780227|r  181 IIP  183 (426)
Q Consensus       181 i~~  183 (426)
                      +||
T Consensus       132 ~pG  134 (368)
T TIGR01133       132 VPG  134 (368)
T ss_pred             HHH
T ss_conf             125


No 162
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=41.69  E-value=24  Score=15.25  Aligned_cols=126  Identities=12%  Similarity=0.054  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999863998899948825789999999999851899628852222347722211463356599999999999998
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN  206 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~  206 (426)
                      ....++.|..+++|++|+.+..-+-.....+.+      .++|+|.+-.++++.   .+.++++|-- ....++++.+. 
T Consensus        44 e~~~l~~l~~~~vdGiIi~~~~~~~~~~~~l~~------~~~PvV~i~~~~~~~---~~~~V~~Dn~-~~~~~a~~~L~-  112 (268)
T cd06270          44 EREAIEFLLERRCDALILHSKALSDDELIELAA------QVPPLVLINRHIPGL---ADRCIWLDNE-QGGYLATEHLI-  112 (268)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEECCCCCCC---CCCEEEECHH-HHHHHHHHHHH-
T ss_conf             999999999659999999527799899999996------499899986768999---8988983889-99999999999-


Q ss_pred             HHHHCCCCEEEEEE-CC------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             77516661699997-69------874289999874014332310111111100014576523287865598999999999
Q gi|254780227|r  207 ERSATPRSLIIHEV-MG------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSK  279 (426)
Q Consensus       207 ~A~s~~~~~~iVEv-MG------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~  279 (426)
                      + .. |+++.++-- +.      |..||..+...                    .+..++..++.+..++.+.-.+.+++
T Consensus       113 ~-~G-~~~i~~i~~~~~~~~~~~R~~Gf~~al~~--------------------~gl~~~~~~i~~~~~~~~~g~~~~~~  170 (268)
T cd06270         113 E-LG-HRKIACITGPLTKEDARLRLQGYRDALAE--------------------AGIALDESLIIEGDFTEEGGYAAMQE  170 (268)
T ss_pred             H-CC-CCCEEEECCCCCCCHHHHHHHHHHHHHHH--------------------CCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf             8-39-98389845988883199999999999998--------------------59997800476167767889998899


Q ss_pred             HHHCCC
Q ss_conf             850289
Q gi|254780227|r  280 VMEKKG  285 (426)
Q Consensus       280 ~~~~~~  285 (426)
                      .+++..
T Consensus       171 ll~~~~  176 (268)
T cd06270         171 LLARGA  176 (268)
T ss_pred             HHHCCC
T ss_conf             995699


No 163
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=41.59  E-value=24  Score=15.23  Aligned_cols=128  Identities=17%  Similarity=0.122  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             4569999999986399889994882578999999999985189962885222234-772221146335659999999999
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTID-NDIIPIHQSLGALTAAQVSACFFD  202 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTID-NDi~~td~tiGfdTA~~~~a~~i~  202 (426)
                      ++..+..++.+...++|++|+.|-...-.....+    .+.  ++|+|-+=.+.+ .+++    |+++|-.- -..++++
T Consensus       100 ~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l----~~~--~~P~V~i~~~~~~~~~~----~V~~Dn~~-~~~~a~~  168 (333)
T COG1609         100 PEKEREYLETLLQKRVDGLILLGERPNDSLLELL----AAA--GIPVVVIDRSPPGLGVP----SVGIDNFA-GAYLATE  168 (333)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH----HHC--CCCEEEEECCCCCCCCC----EEECCHHH-HHHHHHH
T ss_conf             6999999999987698989993587880889999----865--99989993767777897----79709899-9999999


Q ss_pred             HHHHHHHHCCCCEEEEEE-------CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             999877516661699997-------6987428999987401433231011111110001457652328786559899999
Q gi|254780227|r  203 NISNERSATPRSLIIHEV-------MGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIE  275 (426)
Q Consensus       203 ~l~~~A~s~~~~~~iVEv-------MGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~  275 (426)
                      .|. + ..| +++.++--       .-|..||........-                    .++-.++.+..++.+.-.+
T Consensus       169 ~L~-~-~G~-~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~--------------------~~~~~~i~~~~~~~~~g~~  225 (333)
T COG1609         169 HLI-E-LGH-RRIAFIGGPLDSSASRERLEGYRAALREAGL--------------------PINPEWIVEGDFSEESGYE  225 (333)
T ss_pred             HHH-H-CCC-CEEEEEECCCCCCCHHHHHHHHHHHHHHCCC--------------------CCCCCEEEECCCCHHHHHH
T ss_conf             999-8-799-8599996798772189999999999997599--------------------9774236616788789999


Q ss_pred             HHHHHHHCCC
Q ss_conf             9999850289
Q gi|254780227|r  276 RLSKVMEKKG  285 (426)
Q Consensus       276 ~i~~~~~~~~  285 (426)
                      .+++.+....
T Consensus       226 ~~~~ll~~~~  235 (333)
T COG1609         226 AAERLLARGE  235 (333)
T ss_pred             HHHHHHHCCC
T ss_conf             9999985489


No 164
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.44  E-value=24  Score=15.22  Aligned_cols=128  Identities=11%  Similarity=0.075  Sum_probs=70.2

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r   31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN  110 (426)
Q Consensus        31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~  110 (426)
                      |||+++.+-..|=...+++|+-++|+.+  |++|.-.     +. ..      +.                         
T Consensus         1 kIg~i~~~~~npf~~~v~~G~e~aA~~~--G~~v~~~-----~~-~~------~~-------------------------   41 (273)
T cd06310           1 KIALVPKGTTSDFWQAVKAGAEAAAKEL--GVKVTFQ-----GP-AS------ET-------------------------   41 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE-----CC-CC------CC-------------------------
T ss_conf             9899959999859999999999999980--9989997-----28-99------78-------------------------


Q ss_pred             CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCCC
Q ss_conf             30111012345674569999999986399889994882578999999999985189962885222234772221--1463
Q gi|254780227|r  111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPI--HQSL  188 (426)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~t--d~ti  188 (426)
                                  +.+.....++.+...++|++++..-|.+... ..|.+ +.+  .+||||.+    |+++...  ...+
T Consensus        42 ------------d~~~q~~~i~~~i~~~vDgIii~p~~~~~~~-~~l~~-a~~--~gIPvV~~----d~~~~~~~~~~~V  101 (273)
T cd06310          42 ------------DVAGQVNLLENAIARGPDAILLAPTDAKALV-PPLKE-AKD--AGIPVVLI----DSGLNSDIAVSFV  101 (273)
T ss_pred             ------------CHHHHHHHHHHHHHCCCCEEEEECCCCHHHH-HHHHH-HHH--CCCCEEEE----ECCCCCCCCCEEE
T ss_conf             ------------9999999999999749999999168714479-99999-998--49985898----0333467760399


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             3565999999999999987751666169999
Q gi|254780227|r  189 GALTAAQVSACFFDNISNERSATPRSLIIHE  219 (426)
Q Consensus       189 GfdTA~~~~a~~i~~l~~~A~s~~~~~~iVE  219 (426)
                      |.|.- .....+.+.+.. ....++++.++.
T Consensus       102 ~~dn~-~~G~~a~~~l~~-~~~~~~~i~~i~  130 (273)
T cd06310         102 ATDNV-AAGKLAAEALAE-LLGKKGKVAVIS  130 (273)
T ss_pred             EECHH-HHHHHHHHHHHH-HCCCCCCEEEEC
T ss_conf             85649-999999999998-648998478853


No 165
>TIGR00216 ispH_lytB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; InterPro: IPR003451   Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants .    LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood . Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response .; GO: 0019288 isopentenyl diphosphate biosynthetic process mevalonate-independent pathway.
Probab=41.28  E-value=24  Score=15.20  Aligned_cols=56  Identities=5%  Similarity=-0.176  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             8999999998718743188418861235589867999999999999999977998669999
Q gi|254780227|r  327 GSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGED  387 (426)
Q Consensus       327 ~~~La~~i~~~~~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i  387 (426)
                      ...+.+.++.++....+.+..-.|     .-|--+--+||.-=+.||+.+.....-+|+-+
T Consensus       215 ~~~i~~~~~~~~~~~~v~~~lnnh-----fmsfntIC~AT~~RQ~Av~~la~~D~Dl~~Vi  270 (354)
T TIGR00216       215 TKEIVAALKARYPEKEVPVSLNNH-----FMSFNTICYATQNRQDAVKELAPEDVDLMLVI  270 (354)
T ss_pred             HHHHHHHHHHHHHHHEEEEEHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf             999999999863431310000033-----22243476788888999998322051489997


No 166
>pfam11931 DUF3449 Domain of unknown function (DUF3449). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 181 to 207 amino acids in length. This domain has two conserved sequence motifs: PIP and CEICG.
Probab=41.23  E-value=24  Score=15.22  Aligned_cols=74  Identities=15%  Similarity=0.247  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH--CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             69999999986399889994882578999999999985--1899628852222347722211463356599999999999
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKE--KNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDN  203 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~--~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~  203 (426)
                      .+..=+-.|.-+++.+-.=|.||-|+.|=..+-..|.+  +.+++.+.|||-|    ..+-+     =|-++-+.++-..
T Consensus        78 PIPyWLYKLhGL~~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcLGI~nt----~~F~~-----IT~I~dA~~Lw~k  148 (187)
T pfam11931        78 PIPYWLYKLHGLGKEFKCEICGNTSYKGRKAFEKHFSEWRHAYGLRCLGIPNT----RHFKE-----ITKIEEALELWEK  148 (187)
T ss_pred             CCCHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCHHHHCCCEECCCCCH----HHHCC-----CCCHHHHHHHHHH
T ss_conf             55289999707997166575688510157899987070135315701589980----88747-----5729999999999


Q ss_pred             HHHHH
Q ss_conf             99877
Q gi|254780227|r  204 ISNER  208 (426)
Q Consensus       204 l~~~A  208 (426)
                      |..+.
T Consensus       149 lk~~~  153 (187)
T pfam11931       149 LKKQT  153 (187)
T ss_pred             HHHHH
T ss_conf             99876


No 167
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=41.00  E-value=24  Score=15.18  Aligned_cols=47  Identities=28%  Similarity=0.306  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             456999999998639988999488257899999999998518996288522223477
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND  180 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND  180 (426)
                      ++.++++++.|..-+ .-| ..|+..|---|+.+.-++.++   +.     .+||+.
T Consensus        66 deAie~Aa~ILv~aK-rPl-lyg~s~tscEA~~~gielaE~---~g-----aviD~~  112 (429)
T COG1029          66 DEAIEKAAEILVNAK-RPL-LYGWSSTSCEAQELGIELAEK---LG-----AVIDSN  112 (429)
T ss_pred             HHHHHHHHHHHHHCC-CCE-EECCCCCHHHHHHHHHHHHHH---HC-----CEECCC
T ss_conf             999999999998267-852-623553218899999999987---37-----277478


No 168
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=40.96  E-value=25  Score=15.17  Aligned_cols=30  Identities=17%  Similarity=0.156  Sum_probs=25.3

Q ss_pred             CEEEEEECCC----CCCHHHHHHHHHCCCCCCCH
Q ss_conf             1699997698----74289999874014332310
Q gi|254780227|r  214 SLIIHEVMGR----NCGWLTAYSAHCYLNMIQDR  243 (426)
Q Consensus       214 ~~~iVEvMGR----~aG~LAl~~ala~ga~~~~i  243 (426)
                      +=|++.-||-    |+|.||...|.|++.|+.+.
T Consensus       496 ~~HvfqNlGDGTy~HSG~LAIRaaVAa~~niTyK  529 (1168)
T PRK13030        496 TKHVFQNLGDGTYFHSGLLAIRQAVAAGANITYK  529 (1168)
T ss_pred             CCEEEEECCCCCCHHCCHHHHHHHHHCCCCEEEE
T ss_conf             9737997876620203269999999769973899


No 169
>TIGR01663 PNK-3'Pase polynucleotide kinase 3'-phosphatase; InterPro: IPR006550   These sequences represent the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3'-phosphates is essential for the further processing of the break by DNA polymerases , . The central phosphatase domain is a member of the IIIA subfamily (IPR006549 from INTERPRO) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by IPR006551 from INTERPRO. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. .
Probab=40.63  E-value=25  Score=15.14  Aligned_cols=44  Identities=18%  Similarity=0.102  Sum_probs=19.9

Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHCCC
Q ss_conf             101111111000145765232878------65598999999999850289
Q gi|254780227|r  242 DRNYIDGFIFSPDFKGIDGVYLPE------MSFNLEVEIERLSKVMEKKG  285 (426)
Q Consensus       242 ~i~~~~~~~~~~~~~~~d~iliPE------~~~~~~~~~~~i~~~~~~~~  285 (426)
                      +.||+|+.++..+.++.-+|+.--      ..+.+++|=..|+...++-|
T Consensus       198 ~yPE~P~KL~~L~~~GyK~~~FTNQ~~I~RGK~~~~~FK~K~~~~V~KLG  247 (526)
T TIGR01663       198 LYPEVPRKLKELEKDGYKLVLFTNQGSIARGKLNLDDFKVKVKAVVEKLG  247 (526)
T ss_pred             ECCCCCHHHHHHHHCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHCC
T ss_conf             45654457888741882799984577300155565676668888898618


No 170
>KOG1436 consensus
Probab=40.44  E-value=25  Score=15.12  Aligned_cols=26  Identities=12%  Similarity=-0.091  Sum_probs=18.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             12355898679999999999999999
Q gi|254780227|r  351 FARSAPSGSEDLSLIKKMVVLAVDSA  376 (426)
Q Consensus       351 ~qRgg~Ps~~Dr~~a~~lG~~Av~~~  376 (426)
                      +.-||-.|-.|...-.+.|..-|++-
T Consensus       335 IG~GGV~SG~DA~EkiraGASlvQly  360 (398)
T KOG1436         335 IGCGGVSSGKDAYEKIRAGASLVQLY  360 (398)
T ss_pred             EEECCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             84168565476999986271399888


No 171
>TIGR02638 lactal_redase lactaldehyde reductase; InterPro: IPR013460    The proteins in this entry form a distinct clade of iron-containing alcohol dehydrogenases. The genes encoding these proteins are generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in the production of lactaldehydes, which are reduced by these enzymes to 1,2 propanediol . These enzymes are also sometimes called 1,2 propanediol oxidoreductases. They are active under anaerobic conditions in E. coli, while being inactivated by reactive oxygen species under aerobic conditions . Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase..
Probab=39.95  E-value=25  Score=15.07  Aligned_cols=107  Identities=19%  Similarity=0.158  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             4569999999986399889994882578999999999985189--96288522223477222114633565999999999
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNY--NITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFF  201 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~--~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i  201 (426)
                      .+..+.=++.+++-+=|+||.|||-=++++|..+-=......+  -.+.=||-+|=.-=+|    .+=-.|.+=++||..
T Consensus        72 ~~~Vk~G~a~~~~sgaDy~iAiGGGSp~DtAKAIgIi~~NPeF~d~~SLeGva~tk~~~vP----~~AipTTaGTAAEvT  147 (380)
T TIGR02638        72 ITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIIVNNPEFSDVVSLEGVADTKKKGVP----IIAIPTTAGTAAEVT  147 (380)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCCCCCC----EEECCCCCCHHHHHH
T ss_conf             8999989999860589779985689740003032000028384551104575531256661----586688753144422


Q ss_pred             HHHHHHHHHCCCCEEEE-------------EECCCCCCHHHHHHHH
Q ss_conf             99998775166616999-------------9769874289999874
Q gi|254780227|r  202 DNISNERSATPRSLIIH-------------EVMGRNCGWLTAYSAH  234 (426)
Q Consensus       202 ~~l~~~A~s~~~~~~iV-------------EvMGR~aG~LAl~~al  234 (426)
                      -|.-.+=...++...+|             ++|=.=--.|++.+|+
T Consensus       148 iNyVItDE~~~~K~VcvDp~~IP~vAv~D~~~M~~mP~~ltAATGm  193 (380)
T TIGR02638       148 INYVITDEENKRKFVCVDPHDIPDVAVVDAELMLSMPKSLTAATGM  193 (380)
T ss_pred             HCCEEECCCCCEEEEEECCCCCCEEEEECHHHHHHCCHHHHHHHCH
T ss_conf             1514762454512688756767806654737762155000000020


No 172
>pfam04405 ScdA_N Domain of Unknown function (DUF542). This domain is always found in conjunction with the HHE domain (pfam03794) at the N-terminus.
Probab=39.94  E-value=25  Score=15.09  Aligned_cols=28  Identities=21%  Similarity=0.319  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             699999999863998899948825789999
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTAC  155 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~  155 (426)
                      ...+..+.|++++||  ++.||+-|+.-|.
T Consensus        11 ~~p~~a~vF~~~gID--FCCgG~~~L~eA~   38 (56)
T pfam04405        11 EDPRAARVFRKYGID--FCCGGKVSLAEAC   38 (56)
T ss_pred             HCHHHHHHHHHCCCC--CCCCCCCHHHHHH
T ss_conf             794799999994966--5689980699999


No 173
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973    The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=39.83  E-value=18  Score=15.98  Aligned_cols=56  Identities=25%  Similarity=0.301  Sum_probs=43.6

Q ss_pred             HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC---------CCCCCCCCC-CH
Q ss_conf             999999863998899948825789999999999851899628852222347---------722211463-35
Q gi|254780227|r  129 VSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDN---------DIIPIHQSL-GA  190 (426)
Q Consensus       129 ~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDN---------Di~~td~ti-Gf  190 (426)
                      .+..=|+++||+-+-.|=||.++.-...-++      -.++++-.+|.+=|         ++|..+-|| |+
T Consensus       225 ~v~pLleklGi~V~~~~tGD~r~~ev~~aHr------A~lN~v~CSks~~nlA~~m~~~YGIPyf~~SFyGi  290 (470)
T TIGR01283       225 LVKPLLEKLGIRVLATITGDSRYAEVQTAHR------AKLNMVQCSKSMINLARKMEEKYGIPYFEVSFYGI  290 (470)
T ss_pred             CCCCHHHHCCCEEEEECCCCCCHHHHHCCCC------CCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCHH
T ss_conf             0010143389179997378887899840411------55433575236788999999646897587214108


No 174
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.63  E-value=26  Score=15.04  Aligned_cols=101  Identities=18%  Similarity=0.177  Sum_probs=47.3

Q ss_pred             EEEEEEECCC---CCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             3799983687---7514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r   30 HKVAFLTAGG---IAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV  106 (426)
Q Consensus        30 krI~IltsGG---~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~  106 (426)
                      ||+||+.||-   |-.-+|-++-.+.. +  ...|.+...|---..-+                .-+.+.-|-..--+|-
T Consensus         2 Kkv~ViLSGCGV~DGaEIHEsVltlla-i--~r~GA~~~cFAP~~~Q~----------------hViNHlTGE~m~EtRN   62 (217)
T COG3155           2 KKVGVILSGCGVYDGAEIHESVLTLLA-I--SRSGAQAVCFAPDKQQV----------------HVINHLTGEAMPETRN   62 (217)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHH-H--HHCCCEEEEECCCCHHH----------------HHHHHCCCCCCHHHHH
T ss_conf             626999756755540788999999999-9--75386258746992256----------------6665314212403444


Q ss_pred             CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf             8865301110123456745699999999863998899948825789999999
Q gi|254780227|r  107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLL  158 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~  158 (426)
                      -+- +...+.|+.+.        -+...+...+|+|++=||.|..+....++
T Consensus        63 VLv-EsARIaRG~i~--------~l~~a~~e~~DALivPGGFGAAKNLsdFA  105 (217)
T COG3155          63 VLV-ESARIARGEIR--------PLAQADAEELDALIVPGGFGAAKNLSDFA  105 (217)
T ss_pred             HHH-HHHHHHHCCCC--------CHHHCCHHHCCEEECCCCCCHHHHHHHHH
T ss_conf             688-77777615666--------23456976634266158630232057774


No 175
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.77  E-value=26  Score=14.96  Aligned_cols=127  Identities=13%  Similarity=0.033  Sum_probs=63.7

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             99983687751489999999999998569978999838366010799130462698888746407874003367888653
Q gi|254780227|r   32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNF  111 (426)
Q Consensus        32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~  111 (426)
                      ||++...=.-|=...+++|+-+.|...  |++++-.                                   .+..     
T Consensus         2 IGvvv~~~~npff~~v~~gie~~a~~~--G~~~~i~-----------------------------------~s~~-----   39 (267)
T cd06322           2 IGASLLTQQHPFYIELANAMKEEAKKQ--KVNLIVS-----------------------------------IANQ-----   39 (267)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEE-----------------------------------CCCC-----
T ss_conf             899968998979999999999999974--9999998-----------------------------------3999-----


Q ss_pred             CHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC--CCC
Q ss_conf             011101234567456999999998639988999488257899999999998518996288522223477222114--633
Q gi|254780227|r  112 SDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ--SLG  189 (426)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~--tiG  189 (426)
                                 +.+.....+++|...++|++++..-|.+.... .+.+ +.  ..+||||.+    |.+..+.+.  .+|
T Consensus        40 -----------d~~~q~~~i~~li~~~vDgiIi~p~~~~~~~~-~~~~-~~--~~gIPvV~~----d~~~~~~~~~~~V~  100 (267)
T cd06322          40 -----------DLNKQLSDVEDFITKKVDAIVLSPVDSKGIRA-AIAK-AK--KAGIPVITV----DIAAEGVAVVSHVA  100 (267)
T ss_pred             -----------CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH-HHHH-HH--HCCCCEEEE----ECCCCCCCCCEEEE
T ss_conf             -----------99999999999997499999990676101069-9999-99--759978998----34655566432996


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             56599999999999998775166616999976
Q gi|254780227|r  190 ALTAAQVSACFFDNISNERSATPRSLIIHEVM  221 (426)
Q Consensus       190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvM  221 (426)
                      .|--. -...+...+... ...++++.++..-
T Consensus       101 ~Dn~~-~g~~a~~~l~~~-l~g~~~i~~i~~~  130 (267)
T cd06322         101 TDNYA-GGVLAGELAAKV-LNGKGQVAIIDYP  130 (267)
T ss_pred             ECCHH-HHHHHHHHHHHH-HCCCCEEEEEECC
T ss_conf             26289-999999999997-3389459999179


No 176
>PRK12483 threonine dehydratase; Reviewed
Probab=38.53  E-value=27  Score=14.93  Aligned_cols=139  Identities=17%  Similarity=0.137  Sum_probs=70.3

Q ss_pred             HHHHHHHHCC--CCEEEE-ECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-------------------CCCC-
Q ss_conf             9999998639--988999-4882578999999999985189962885222234772-------------------2211-
Q gi|254780227|r  129 VSAHHLMQSG--VTILHT-IGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI-------------------IPIH-  185 (426)
Q Consensus       129 ~~~~~l~~~~--Id~Li~-IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi-------------------~~td-  185 (426)
                      ..++-+++..  +|++++ +||-|-..+...   +++..+.+++||||---=.+++                   .|+- 
T Consensus       175 iglEIleq~p~~lD~V~vpVGGGGLiaGia~---~~K~~~P~ikVIGVEpe~a~~m~~Sl~aG~~v~L~~v~tfaDG~AV  251 (521)
T PRK12483        175 VAMEILRQHPGPLDAIFVPVGGGGLIAGIAA---YVKYLRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAV  251 (521)
T ss_pred             HHHHHHHHCCCCCCEEEECCCCCCHHHHHHH---HHHHHCCCCEEEEEEECCCHHHHHHHHHCCEEECCCCCCCCCCCCC
T ss_conf             9999998678998889976787417889999---9986199970899996787689999983983676888852676455


Q ss_pred             CCCCHHH---HHH-----------HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH----------------H
Q ss_conf             4633565---999-----------999999999987751666169999769874289999874----------------0
Q gi|254780227|r  186 QSLGALT---AAQ-----------VSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAH----------------C  235 (426)
Q Consensus       186 ~tiGfdT---A~~-----------~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~al----------------a  235 (426)
                      ..+|-.|   +-+           .++.+|..+..+     .|+ |+|    -+|=|++++--                .
T Consensus       252 ~~vG~~tF~i~k~~VDdvv~Vs~deIcaAIkdife~-----tr~-I~E----PAGAlalAglk~y~~~~~~~gk~~v~i~  321 (521)
T PRK12483        252 AQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDD-----TRS-ITE----PAGALAVAGIKKYVEREGIEGQTLVAID  321 (521)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHH-----CCE-EEC----CCHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             778988999998619957998917999999999982-----666-634----7056679999999985488767379995


Q ss_pred             CCCCCCCHHHHHHHHHHC---CCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             143323101111111000---145765232878655989999999998
Q gi|254780227|r  236 YLNMIQDRNYIDGFIFSP---DFKGIDGVYLPEMSFNLEVEIERLSKV  280 (426)
Q Consensus       236 ~ga~~~~i~~~~~~~~~~---~~~~~d~iliPE~~~~~~~~~~~i~~~  280 (426)
                      ||||+-+-..-....+..   .....-.+-|||.|=++..|++.+-.+
T Consensus       322 sGaN~nF~rLr~v~era~~Ge~rE~~~~v~IpE~~Gsf~~f~~~~g~~  369 (521)
T PRK12483        322 SGANVNFDRLRHVAERAELGEQREAIIAVTIPEQPGSFKAFCAALGKR  369 (521)
T ss_pred             CCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             046667542135577653163414799995588886899999986667


No 177
>TIGR00419 tim triosephosphate isomerase; InterPro: IPR000652   Triosephosphate isomerase () (TIM)  is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism . The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder .; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process.
Probab=38.47  E-value=27  Score=14.93  Aligned_cols=25  Identities=12%  Similarity=-0.186  Sum_probs=13.8

Q ss_pred             EECCCCCCHHHHHHHHHCCCCCCCH
Q ss_conf             9769874289999874014332310
Q gi|254780227|r  219 EVMGRNCGWLTAYSAHCYLNMIQDR  243 (426)
Q Consensus       219 EvMGR~aG~LAl~~ala~ga~~~~i  243 (426)
                      .-.|-|.|.+-+.+--=.|+.+++|
T Consensus        67 ~~~GahTG~i~Aem~~d~Ga~g~li   91 (244)
T TIGR00419        67 VKSGAHTGEISAEMLKDLGAKGTLI   91 (244)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             1787652236899998459972887


No 178
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=37.16  E-value=28  Score=14.80  Aligned_cols=123  Identities=13%  Similarity=0.059  Sum_probs=61.6

Q ss_pred             HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999863998899948825789999999999851899628852222347722211-4633565999999999999987
Q gi|254780227|r  129 VSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH-QSLGALTAAQVSACFFDNISNE  207 (426)
Q Consensus       129 ~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td-~tiGfdTA~~~~a~~i~~l~~~  207 (426)
                      .+.+.+..+++|++|+++=..+-.....|.+      .++|+|.+    |......+ .++++|-.. ...++++.+. +
T Consensus        55 ~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~------~~iPvV~~----d~~~~~~~~~~V~~d~~~-a~~~~~~~L~-~  122 (275)
T cd06295          55 WLARYLASGRADGVILIGQHDQDPLPERLAE------TGLPFVVW----GRPLPGQPYCYVGSDNVG-GGRLATEHLL-A  122 (275)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEE----CCCCCCCCCCEEEECHHH-HHHHHHHHHH-H
T ss_conf             9999998489988999799899799999995------79999999----862689999789828799-9999999999-8


Q ss_pred             HHHCCCCEEEEEE-CC------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             7516661699997-69------8742899998740143323101111111000145765232878655989999999998
Q gi|254780227|r  208 RSATPRSLIIHEV-MG------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKV  280 (426)
Q Consensus       208 A~s~~~~~~iVEv-MG------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~  280 (426)
                       ..+ +++.++-- +.      |..||..+...                    .+..++..++-+..++.+.-.+.+++.
T Consensus       123 -~G~-~~I~~i~~~~~~~~~~~R~~Gf~~a~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (275)
T cd06295         123 -RGR-RRIAFLGGPQDMPEGEERLEGYREALAE--------------------AGLPLDPRLVAPGDFTEESGRAAMRAL  180 (275)
T ss_pred             -HCC-CEEEEECCCCCCCHHHHHHHHHHHHHHH--------------------CCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf             -099-8798705886672699999999999998--------------------699999417996577668799998889


Q ss_pred             HHCCC
Q ss_conf             50289
Q gi|254780227|r  281 MEKKG  285 (426)
Q Consensus       281 ~~~~~  285 (426)
                      ++...
T Consensus       181 l~~~~  185 (275)
T cd06295         181 LERGP  185 (275)
T ss_pred             HHCCC
T ss_conf             85499


No 179
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.06  E-value=28  Score=14.79  Aligned_cols=136  Identities=14%  Similarity=0.035  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             69999999986399889994882578999999999985189962885222234772221146335659999999999999
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS  205 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~  205 (426)
                      .....++.+.+.++|++|+.+.+-+-.....|.+      .++|+|.+=..-+-.  ..-.++++|- .+.+.++.+.+.
T Consensus        43 ~e~~~i~~l~~~~vdgiIi~~~~~~~~~~~~l~~------~~iPvV~id~~~~~~--~~~~~V~~Dn-~~a~~~a~~~L~  113 (270)
T cd06296          43 PERQWVERLSARRTDGVILVTPELTSAQRAALRR------TGIPFVVVDPAGDPD--ADVPSVGATN-WAGGLAATEHLL  113 (270)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------CCCCEEEECCCCCCC--CCCCEEEECH-HHHHHHHHHHHH
T ss_conf             9999999999549999999068899999999997------499999987888888--8986899576-999999999999


Q ss_pred             HHHHHCCCCEEEEEECCCCCCHHHH------HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             8775166616999976987428999------9874014332310111111100014576523287865598999999999
Q gi|254780227|r  206 NERSATPRSLIIHEVMGRNCGWLTA------YSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSK  279 (426)
Q Consensus       206 ~~A~s~~~~~~iVEvMGR~aG~LAl------~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~  279 (426)
                      .  ..+ +++.++  .|+..-+.+.      ..++..                 .+..++..++.+..++.+.-.+.+++
T Consensus       114 ~--~G~-~~I~~i--~~~~~~~~~~~R~~Gf~~a~~~-----------------~~~~~~~~~i~~~~~~~~~~~~~~~~  171 (270)
T cd06296         114 E--LGH-RRIGFI--TGPPDLLCSRARLDGYRAALAE-----------------AGIPVDPALVREGDFSTESGFRAAAE  171 (270)
T ss_pred             H--HCC-CCEEEE--CCCCCCHHHHHHHHHHHHHHHH-----------------CCCCCCHHHEEECCCHHHHHHHHHHH
T ss_conf             8--589-728884--5998865599999999999998-----------------69998855533065017899999999


Q ss_pred             HHHCCC--CEEEEEE
Q ss_conf             850289--5389950
Q gi|254780227|r  280 VMEKKG--SVAIFVS  292 (426)
Q Consensus       280 ~~~~~~--~~vIVvs  292 (426)
                      .+++..  -+++..+
T Consensus       172 ll~~~~~~~aii~~~  186 (270)
T cd06296         172 LLALPERPTAIFAGN  186 (270)
T ss_pred             HHHCCCCCCCEEECC
T ss_conf             995499886203478


No 180
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=37.01  E-value=28  Score=14.78  Aligned_cols=29  Identities=34%  Similarity=0.518  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             99999999998518996288522223477
Q gi|254780227|r  152 TTACDLLRYLKEKNYNITVVGLPKTIDND  180 (426)
Q Consensus       152 ~~a~~L~e~~~~~~~~i~vigiPKTIDND  180 (426)
                      .....|.+..++.+...-|||.|+++|+-
T Consensus        40 ~~~~~l~~li~~~~~~~vVVGlP~~m~g~   68 (141)
T COG0816          40 QDFNALLKLVKEYQVDTVVVGLPLNMDGT   68 (141)
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             56999999999838887999667688887


No 181
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=36.36  E-value=29  Score=14.72  Aligned_cols=46  Identities=13%  Similarity=0.242  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCH-HHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             4569999999986399889994882-5789999999999851899628852
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGD-DTNTTACDLLRYLKEKNYNITVVGL  173 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGd-gS~~~a~~L~e~~~~~~~~i~vigi  173 (426)
                      .+-+...++...+.+.. ++.+||. ++...   +.+.++++..++.++|.
T Consensus        34 ~dl~~~ll~~~~~~~~~-v~llG~~~~~~~~---~~~~l~~~yP~l~i~g~   80 (172)
T pfam03808        34 TDLIPALLERAAERGKR-VFLLGGKPGVLEK---AAARLRARYPGLRIVGT   80 (172)
T ss_pred             HHHHHHHHHHHHHCCCE-EEEEECCHHHHHH---HHHHHHHHCCCCEEEEE
T ss_conf             99999999999864983-8998088899999---99999988799559998


No 182
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=36.35  E-value=29  Score=14.71  Aligned_cols=170  Identities=14%  Similarity=0.165  Sum_probs=85.6

Q ss_pred             EEEE--EEECCCCCHHHHHHHHHHHHHHHHHCCCCE-EEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCC--CCCCCC
Q ss_conf             3799--983687751489999999999998569978-99983836601079913046269888874640787--400336
Q gi|254780227|r   30 HKVA--FLTAGGIAPCLSSIIGMLINHYNKILPKAE-LIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGG--SPIGNS  104 (426)
Q Consensus        30 krI~--IltsGG~aPG~N~~I~~iv~~a~~~~~~~~-v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GG--t~Lgts  104 (426)
                      .+||  +-.-++.+|--|++--.+...+..+..++- ||..+-.-..-...    ..++..+-   ....|+  ..++.-
T Consensus       106 ~~ia~P~GVI~ai~P~TNPtsT~i~k~l~alK~rNaIIfspHP~a~~~~~~----~~~ii~~a---~~~aGaP~~li~~i  178 (862)
T PRK13805        106 IEIAEPIGVIAGITPTTNPTSTAIFKALIALKTRNPIIFSFHPRAQKSSIA----AAKIVLDA---AVAAGAPKDIIQWI  178 (862)
T ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH----HHHHHHHH---HHHCCCCCCCEEEC
T ss_conf             898773368999617989604899999999860893899358448889999----99999999---99859891436553


Q ss_pred             CCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE-----------
Q ss_conf             78886530111012345674569999999986-399889994882578999999999985189962885-----------
Q gi|254780227|r  105 RVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQ-SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG-----------  172 (426)
Q Consensus       105 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vig-----------  172 (426)
                      . .+                 .++ ..+.|.+ -+++-++.-||-+-.+.|..         .+.|.+|           
T Consensus       179 ~-~p-----------------s~e-~t~~LM~h~~v~lilaTGg~~mVkaAys---------SGkPaigvG~GN~p~~Id  230 (862)
T PRK13805        179 E-EP-----------------SVE-ATNALMNHPGIALILATGGPGMVKAAYS---------SGKPALGVGAGNTPVYID  230 (862)
T ss_pred             C-CC-----------------CHH-HHHHHHCCCCCCEEEECCCHHHHHHHHC---------CCCCCEEECCCCCCEEEE
T ss_conf             8-89-----------------989-9999856999447995597799999970---------799816557898776972


Q ss_pred             -------------ECCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHH----------------HHHHCCCCEEEEEECC
Q ss_conf             -------------222234772-2211463356599999999999998----------------7751666169999769
Q gi|254780227|r  173 -------------LPKTIDNDI-IPIHQSLGALTAAQVSACFFDNISN----------------ERSATPRSLIIHEVMG  222 (426)
Q Consensus       173 -------------iPKTIDNDi-~~td~tiGfdTA~~~~a~~i~~l~~----------------~A~s~~~~~~iVEvMG  222 (426)
                                   .-||-||-+ +..|.++=.+.++  +-+.+..+..                ......+.-.=-++.|
T Consensus       231 ~tAdi~~Aa~~Ii~sktFDng~iCasEq~viv~~~i--yd~~~~~l~~~Gay~l~~eE~~kl~~~~~~~~~g~ln~~iVG  308 (862)
T PRK13805        231 KTADIKRAVNDILLSKTFDNGMICASEQSVIVDDEI--YDEVKEEFKSHGAYFLNKKELKKLEKVIFNKANGALNADIVG  308 (862)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHH--HHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCCCCCHHHHC
T ss_conf             788999999999862126688635677628862888--999999999889798089999999987424889847825418


Q ss_pred             CCCCHHHHHHHHHC
Q ss_conf             87428999987401
Q gi|254780227|r  223 RNCGWLTAYSAHCY  236 (426)
Q Consensus       223 R~aG~LAl~~ala~  236 (426)
                      +++-|||-.+++.-
T Consensus       309 k~a~~IA~~AGi~v  322 (862)
T PRK13805        309 QSAYKIAEMAGFKV  322 (862)
T ss_pred             CCHHHHHHHCCCCC
T ss_conf             78999999829988


No 183
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=36.27  E-value=29  Score=14.71  Aligned_cols=31  Identities=16%  Similarity=0.080  Sum_probs=25.4

Q ss_pred             CEEEEEECCC----CCCHHHHHHHHHCCCCCCCHH
Q ss_conf             1699997698----742899998740143323101
Q gi|254780227|r  214 SLIIHEVMGR----NCGWLTAYSAHCYLNMIQDRN  244 (426)
Q Consensus       214 ~~~iVEvMGR----~aG~LAl~~ala~ga~~~~i~  244 (426)
                      +=|++.=||-    |+|.||...|.|++.|+.+.+
T Consensus       513 ~~HvfqNlGDGTy~HSG~LAIRaAVAag~nITYKI  547 (1186)
T PRK13029        513 RRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKI  547 (1186)
T ss_pred             CCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf             97078877766211040799999986699706999


No 184
>cd02158 PanC_ATPS PanC_ATPS   Pantothenate synthetase (PanC) and ATP-sulfurylase (ATPS) share a similar dinucleotide-binding domain.
Probab=35.84  E-value=29  Score=14.66  Aligned_cols=31  Identities=16%  Similarity=-0.035  Sum_probs=22.7

Q ss_pred             CCCCEEEEEECCC-CCCHHHHHHHHHCCCCCC
Q ss_conf             6661699997698-742899998740143323
Q gi|254780227|r  211 TPRSLIIHEVMGR-NCGWLTAYSAHCYLNMIQ  241 (426)
Q Consensus       211 ~~~~~~iVEvMGR-~aG~LAl~~ala~ga~~~  241 (426)
                      ..+++.+|-|||- |.||++|.-.-+.-++.+
T Consensus        13 ~~k~I~~VpTMG~LH~GHlsLi~~A~~~~~~v   44 (183)
T cd02158          13 GWKTIGAVPTMGPLHEGHLSLIKRAKKENDGV   44 (183)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf             99769998088737699999999998639928


No 185
>pfam01993 MTD methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase. This enzyme family is involved in formation of methane from carbon dioxide EC:1.5.99.9. The enzyme requires coenzyme F420.
Probab=35.58  E-value=30  Score=14.64  Aligned_cols=49  Identities=12%  Similarity=0.050  Sum_probs=34.4

Q ss_pred             CHHHHHHHHHH-HHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             74569999999-9863998899948825789999999999851899628852
Q gi|254780227|r  123 DENPLEVSAHH-LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL  173 (426)
Q Consensus       123 ~~~~~~~~~~~-l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi  173 (426)
                      ++++.++++.+ +++.+=|-.|+|+=|+..-+-..-.|.++..  ++|+|.|
T Consensus        43 ~pe~~e~~~~~~l~~~~pDf~i~isPN~a~PGP~~ARE~l~~~--giP~IvI   92 (276)
T pfam01993        43 DPECVEEVVLDMLEEFEPDFVIYISPNPAAPGPKKAREMLSDS--GYPAVII   92 (276)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHC--CCCEEEE
T ss_conf             9888999999999861899899978998899956799999756--9987998


No 186
>CHL00101 trpG anthranilate synthase component 2
Probab=35.17  E-value=30  Score=14.59  Aligned_cols=23  Identities=4%  Similarity=-0.013  Sum_probs=16.0

Q ss_pred             HHHHHCCCCEEEEECCHHHHHHH
Q ss_conf             99986399889994882578999
Q gi|254780227|r  132 HHLMQSGVTILHTIGGDDTNTTA  154 (426)
Q Consensus       132 ~~l~~~~Id~Li~IGGdgS~~~a  154 (426)
                      +.+++++.+++|.-||=|+-..+
T Consensus        37 ~~i~~~~p~gIILS~GPg~p~~~   59 (190)
T CHL00101         37 SKIKNLNPRHIIISPGPGHPRDS   59 (190)
T ss_pred             HHHHHCCCCEEEECCCCCCHHHC
T ss_conf             99970797989997999995785


No 187
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway.  Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=35.09  E-value=30  Score=14.59  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=23.6

Q ss_pred             CEEEEECCHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             88999488257899-99999999851899628852222347722
Q gi|254780227|r  140 TILHTIGGDDTNTT-ACDLLRYLKEKNYNITVVGLPKTIDNDII  182 (426)
Q Consensus       140 d~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~vigiPKTIDNDi~  182 (426)
                      +..|+|-||||+-. ...|+.....+  +.+++.|  =+||...
T Consensus        60 ~kVi~idGDGs~lM~lg~LaTi~~~~--~~nl~~i--vlnN~~~   99 (157)
T cd02001          60 RKVIVVDGDGSLLMNPGVLLTAGEFT--PLNLILV--VLDNRAY   99 (157)
T ss_pred             CCEEEEECCHHHHHCCCHHHHHHHCC--CCCEEEE--EEECCCC
T ss_conf             96899957558875246199998638--9887999--9979753


No 188
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=34.55  E-value=31  Score=14.53  Aligned_cols=132  Identities=15%  Similarity=0.150  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHH
Q ss_conf             999999998639988999488257899999999998518996288522223477222114--633565999999999999
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQ--SLGALTAAQVSACFFDNI  204 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~--tiGfdTA~~~~a~~i~~l  204 (426)
                      ....+++|...++|+|++.--|.+-- ...+.+ +.+.  +||||.+    |.++.+.++  .+|+|-. .....+.+.+
T Consensus        45 Q~~~ie~li~~~vD~iiv~p~d~~~~-~~~l~~-a~~a--gIPVV~~----d~~~~~~~~~~~V~~Dn~-~~G~~~~~~l  115 (270)
T cd06308          45 QVADIENFIRQGVDLLIISPNEAAPL-TPVVEE-AYRA--GIPVILL----DRKILSDKYTAYIGADNY-EIGRQAGEYI  115 (270)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCHH-HHHHHH-HHHC--CCCEEEE----CCCCCCCCEEEEEECCHH-HHHHHHHHHH
T ss_conf             99999999984999999964885200-899999-9985--9919994----588888870189951768-8899999999


Q ss_pred             HHHHHHCCCCEEEEEECC---------CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             987751666169999769---------87428999987401433231011111110001457652328786559899999
Q gi|254780227|r  205 SNERSATPRSLIIHEVMG---------RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIE  275 (426)
Q Consensus       205 ~~~A~s~~~~~~iVEvMG---------R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~  275 (426)
                      ... ..-+.++.++  .|         |..||..   +|...++                  ..++......++.+.-.+
T Consensus       116 ~~~-~~~~~~i~~i--~G~~~~~~~~~R~~Gf~~---~l~~~~~------------------~~vv~~~~~~~~~~~a~~  171 (270)
T cd06308         116 ANL-LPGKGNILEI--WGLEGSSPAIERHDGFKE---ALSKYPK------------------IKIVAQQDGDWLKEKAEE  171 (270)
T ss_pred             HHH-CCCCCEEEEE--CCCCCCCHHHHHHHHHHH---HHHHCCC------------------CEEEEEECCCCCHHHHHH
T ss_conf             985-0568549996--279998549999999999---9986689------------------524668617667999999


Q ss_pred             HHHHHHHCCCCEEEEE
Q ss_conf             9999850289538995
Q gi|254780227|r  276 RLSKVMEKKGSVAIFV  291 (426)
Q Consensus       276 ~i~~~~~~~~~~vIVv  291 (426)
                      ..+..+..+.-.-.|+
T Consensus       172 ~~~~~L~~~pdi~aI~  187 (270)
T cd06308         172 KMEELLQANPDIDLVY  187 (270)
T ss_pred             HHHHHHHHCCCCCEEE
T ss_conf             9999985088888899


No 189
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=33.98  E-value=31  Score=14.47  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=18.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             328786559899999999985028953899
Q gi|254780227|r  261 VYLPEMSFNLEVEIERLSKVMEKKGSVAIF  290 (426)
Q Consensus       261 iliPE~~~~~~~~~~~i~~~~~~~~~~vIV  290 (426)
                      -+-|..--+.++..+++...++.-+..+.|
T Consensus       165 Yi~Ps~gD~k~~va~~l~e~~~~gkk~~~i  194 (352)
T TIGR03282       165 YIEPSYGDDKHKVAKRLVDLIQEGKKVLAI  194 (352)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             569987865999999999999747847999


No 190
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=33.98  E-value=31  Score=14.47  Aligned_cols=79  Identities=13%  Similarity=0.038  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999863998899948825789999999999851899628852222347722211463356599999999999998
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN  206 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~  206 (426)
                      ....++.|.++++|++|+..++.+..-.   .+.+.+  .++|||.+=...+.+.+    |+..|- .....++++.+..
T Consensus        44 e~~~i~~l~~~~vdGiIi~~~~~~~~~~---~~~l~~--~~iPvV~~~~~~~~~~~----~V~~Dn-~~~~~~~~~~L~~  113 (266)
T cd06282          44 EADAVETLLRQRVDGLILTVADAATSPA---LDLLDA--ERVPYVLAYNDPQPGRP----SVSVDN-RAAARDVAQALAA  113 (266)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCHHH---HHHHHH--CCCCEEEEECCCCCCCC----EEEECH-HHHHHHHHHHHHH
T ss_conf             9999999996599879996378775599---999985--59978999504789999----899887-9999999999997


Q ss_pred             HHHHCCCCEEEE
Q ss_conf             775166616999
Q gi|254780227|r  207 ERSATPRSLIIH  218 (426)
Q Consensus       207 ~A~s~~~~~~iV  218 (426)
                        .. |+++.++
T Consensus       114 --~G-~~~i~~i  122 (266)
T cd06282         114 --LG-HRRIAML  122 (266)
T ss_pred             --CC-CCEEEEE
T ss_conf             --39-9569999


No 191
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=33.85  E-value=32  Score=14.46  Aligned_cols=15  Identities=13%  Similarity=0.144  Sum_probs=7.0

Q ss_pred             CCEEEEECCHHHHHH
Q ss_conf             988999488257899
Q gi|254780227|r  139 VTILHTIGGDDTNTT  153 (426)
Q Consensus       139 Id~Li~IGGdgS~~~  153 (426)
                      .+++|.-||=|+-+.
T Consensus        45 ~~~IIlSpGPg~p~~   59 (191)
T PRK06895         45 FSHILISPGPDVPRA   59 (191)
T ss_pred             CCEEEEECCCCCCCC
T ss_conf             896999089998010


No 192
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=33.85  E-value=25  Score=15.07  Aligned_cols=27  Identities=19%  Similarity=0.247  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             99999999863998899948825789999
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTAC  155 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~  155 (426)
                      ..++.+.+++++||  +|+||+-|+.-|.
T Consensus        15 ~p~aa~vF~~~gID--FCCgG~~~L~eA~   41 (224)
T PRK13276         15 YPKAADIFRSVGID--FCCGGQVSIEAAS   41 (224)
T ss_pred             CCCHHHHHHHCCCC--CCCCCCHHHHHHH
T ss_conf             96589999985983--4489971399999


No 193
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=33.16  E-value=32  Score=14.39  Aligned_cols=90  Identities=18%  Similarity=0.217  Sum_probs=56.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r   31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN  110 (426)
Q Consensus        31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~  110 (426)
                      ||||++.. +-|-++.+..|+.+.+...       |+.       ++..+.++-      +   +..|            
T Consensus         1 ~igi~q~~-~h~~ld~~~~Gf~~~L~~~-------G~~-------~g~nv~~~~------~---na~g------------   44 (281)
T cd06325           1 KVGILQLV-EHPALDAARKGFKDGLKEA-------GYK-------EGKNVKIDY------Q---NAQG------------   44 (281)
T ss_pred             CEEEEEEC-CCHHHHHHHHHHHHHHHHC-------CCC-------CCCCEEEEE------E---ECCC------------
T ss_conf             93899833-7674799999999999964-------976-------798379999------6---0799------------


Q ss_pred             CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             301110123456745699999999863998899948825789999999999851899628852222
Q gi|254780227|r  111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKT  176 (426)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT  176 (426)
                                  +...+..+++.|...+-|-++.||.--+...+        ....++|||....|
T Consensus        45 ------------d~~~l~~ia~~l~~~~~DlIva~gTpaaqa~~--------~~~~~iPIVF~~V~   90 (281)
T cd06325          45 ------------DQSNLPTIARKFVADKPDLIVAIATPAAQAAA--------NATKDIPIVFTAVT   90 (281)
T ss_pred             ------------CHHHHHHHHHHHHHCCCCEEEECCHHHHHHHH--------HCCCCCCEEEEECC
T ss_conf             ------------99999999999985499999987709999999--------62799998999516


No 194
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.26  E-value=34  Score=14.29  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=38.9

Q ss_pred             HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99986399889994882578999999999985189962885222234772221146335659999999999999877516
Q gi|254780227|r  132 HHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSAT  211 (426)
Q Consensus       132 ~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~  211 (426)
                      +.+.+..+|++|+.+-..+......|.    +  .++|+|.+=...+.+++    +++.|-. .-..++++.|..  .. 
T Consensus        50 ~~~~~~~vDGiIi~~~~~~~~~~~~l~----~--~~iPvV~idr~~~~~~~----~V~~Dn~-~~~~~a~~~Li~--~G-  115 (283)
T cd06279          50 ALVVSALVDGFIVYGVPRDDPLVAALL----R--RGLPVVVVDQPLPPGVP----SVGIDDR-AAAREAARHLLD--LG-  115 (283)
T ss_pred             HHHHHCCCCEEEEECCCCCHHHHHHHH----H--CCCCEEEECCCCCCCCC----EEEECCH-HHHHHHHHHHHH--CC-
T ss_conf             999977999999917989989999998----5--79978998876889999----8996728-879999999997--29-


Q ss_pred             CCCEEEE
Q ss_conf             6616999
Q gi|254780227|r  212 PRSLIIH  218 (426)
Q Consensus       212 ~~~~~iV  218 (426)
                      |+++.++
T Consensus       116 h~~Ia~i  122 (283)
T cd06279         116 HRRIGIL  122 (283)
T ss_pred             CCEEEEE
T ss_conf             9869999


No 195
>pfam05833 FbpA Fibronectin-binding protein A N-terminus (FbpA). This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host.
Probab=32.12  E-value=28  Score=14.78  Aligned_cols=13  Identities=38%  Similarity=0.623  Sum_probs=8.6

Q ss_pred             CEEEEEECCCCCC
Q ss_conf             1699997698742
Q gi|254780227|r  214 SLIIHEVMGRNCG  226 (426)
Q Consensus       214 ~~~iVEvMGR~aG  226 (426)
                      +..++|+||||+=
T Consensus       111 ~~Li~ElmGr~SN  123 (447)
T pfam05833       111 YTLIVELMGRHSN  123 (447)
T ss_pred             EEEEEEECCCCCC
T ss_conf             8999997178661


No 196
>TIGR01508 rib_reduct_arch diaminohydroxyphosphoribosylaminopyrimidine reductase; InterPro: IPR006401   These sequences represent a specific reductase of riboflavin biosynthesis in the archaea, diaminohydroxyphosphoribosylaminopyrimidine reductase. It should not be confused with bacterial 5-amino-6-(5-phosphoribosylamino)uracil reductase. The intermediate 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine in riboflavin biosynthesis is reduced first and then deaminated in both archaea and fungi, opposite to the order in bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain fused to the reductase domain, which is similar to this protein but found in most bacteria. .
Probab=31.94  E-value=34  Score=14.26  Aligned_cols=83  Identities=22%  Similarity=0.149  Sum_probs=47.1

Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCHHHHC--------CCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf             8746407874003367888653011101--------23456745699999999863998899948825789999999999
Q gi|254780227|r   90 AEQLLSYGGSPIGNSRVKLTNFSDCIKR--------GLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYL  161 (426)
Q Consensus        90 v~~~~~~GGt~LgtsR~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~  161 (426)
                      ++-+...+-|++-||+..+---+..++.        -..-.+..+++.++++|...||+.|++=||-.=..+.      +
T Consensus        93 ariL~~~A~T~v~~s~~~~~Ekekk~~~l~~~gv~V~~~G~~~v~L~~lld~L~~kgv~rLmvEGGG~Li~~l------~  166 (224)
T TIGR01508        93 ARILNKEAKTVVAVSEAEPEEKEKKVEELEKKGVEVVKFGEERVDLEKLLDILEDKGVRRLMVEGGGTLIWSL------I  166 (224)
T ss_pred             CEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCEEEHHH------H
T ss_conf             2044689845999604787303678887774974899924785346899999874797099982485101022------3


Q ss_pred             HHCCC-CCEEEEECCCCC
Q ss_conf             85189-962885222234
Q gi|254780227|r  162 KEKNY-NITVVGLPKTID  178 (426)
Q Consensus       162 ~~~~~-~i~vigiPKTID  178 (426)
                      ++.=+ .|.|.--|+=|=
T Consensus       167 ~~~LvDEi~vy~aP~~~G  184 (224)
T TIGR01508       167 KENLVDEIRVYIAPKIIG  184 (224)
T ss_pred             HCCCEEEEEEEECCEEEC
T ss_conf             028435899988146762


No 197
>PRK02399 hypothetical protein; Provisional
Probab=31.87  E-value=34  Score=14.25  Aligned_cols=98  Identities=13%  Similarity=0.145  Sum_probs=47.8

Q ss_pred             CCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99789998383660107991304626988887464078740033678886530111012345674569999999986399
Q gi|254780227|r   60 PKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGV  139 (426)
Q Consensus        60 ~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~I  139 (426)
                      .|.+++-+.-|..|--..    ..+.+.+++..   .+|+-+..-|....+ .+..+    .-.......+.+-+++.+|
T Consensus        28 ~G~~v~~iDvg~~~~p~~----~~dis~~~VA~---~~g~~~~~~~~~~dr-g~ai~----~M~~ga~~~v~~L~~~g~i   95 (407)
T PRK02399         28 AGLEVVTVDVSTLGPPPF----PADISAEEVAE---AAGDGIEAVFCSGDR-GRAMA----AMAEGAERLVRELYKRGDV   95 (407)
T ss_pred             CCCCEEEEEECCCCCCCC----CCCCCHHHHHH---HCCCCHHHHHCCCCH-HHHHH----HHHHHHHHHHHHHHHCCCC
T ss_conf             699679998347889989----99879899997---559987787547988-99999----9999999999999864882


Q ss_pred             CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             88999488257899999999998518996288522223
Q gi|254780227|r  140 TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI  177 (426)
Q Consensus       140 d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI  177 (426)
                      ++.|.+||-+--.-+....+       .+| +|+||=|
T Consensus        96 ~Gvi~lGGs~GT~lat~amr-------aLP-iG~PK~m  125 (407)
T PRK02399         96 AGVIGLGGSGGTALATPAMR-------ALP-IGVPKLM  125 (407)
T ss_pred             CEEEEECCCCHHHHHHHHHH-------HCC-CCCCEEE
T ss_conf             45887348740699999998-------566-6787157


No 198
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II.  CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species.  The E.coli enzyme is
Probab=31.54  E-value=34  Score=14.22  Aligned_cols=49  Identities=10%  Similarity=0.205  Sum_probs=25.6

Q ss_pred             HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf             99986399889994882578999999999985-189962885222234772221146335659
Q gi|254780227|r  132 HHLMQSGVTILHTIGGDDTNTTACDLLRYLKE-KNYNITVVGLPKTIDNDIIPIHQSLGALTA  193 (426)
Q Consensus       132 ~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~-~~~~i~vigiPKTIDNDi~~td~tiGfdTA  193 (426)
                      +.+++.+.+++|.-||=|+-..+....+..++ .+.++||.||             |.|++--
T Consensus        33 ~~i~~~~p~giIlS~GPg~p~~~~~~~~~~~~~~~~~iPILGI-------------ClG~Q~i   82 (178)
T cd01744          33 EEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGI-------------CLGHQLL   82 (178)
T ss_pred             HHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCCCCEEEE-------------CHHHHHH
T ss_conf             9998419997998999999577344499999997469988998-------------1217889


No 199
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=30.93  E-value=35  Score=14.15  Aligned_cols=41  Identities=5%  Similarity=-0.023  Sum_probs=23.4

Q ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCC-CHHHHHHHHHHHHHHH
Q ss_conf             9999998718743188418861235589-8679999999999999
Q gi|254780227|r  330 FADKFANMIKAERSIVQKSGYFARSAPS-GSEDLSLIKKMVVLAV  373 (426)
Q Consensus       330 La~~i~~~~~~~~~~~~~lGy~qRgg~P-s~~Dr~~a~~lG~~Av  373 (426)
                      +.+..++.++. .+|+-.|-.+  .|.| ...|-.||+.+|-.-+
T Consensus       344 i~ela~~if~~-~VRig~P~~~--~gl~~~~~~P~~at~~GLl~y  385 (420)
T PRK09472        344 LAACAQRVFHT-QVRIGAPLNI--TGLTDYAQEPYYSTAVGLLHY  385 (420)
T ss_pred             HHHHHHHHHCC-CCEEECCCCC--CCCHHHCCCCHHHHHHHHHHH
T ss_conf             89999999689-8189658766--885443379498999999999


No 200
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.49  E-value=36  Score=14.10  Aligned_cols=86  Identities=10%  Similarity=0.085  Sum_probs=52.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r   31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN  110 (426)
Q Consensus        31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~  110 (426)
                      |||++...=..|=-..+.+|+-+.|+.+  |++++....      ++                                 
T Consensus         1 kIg~vv~~~~npF~~~~~~G~~~~a~~~--G~~~~~~~~------~~---------------------------------   39 (277)
T cd06319           1 QIAYIVSDLRIPFWQIMGRGVKSKAKAL--GYDAVELSA------EN---------------------------------   39 (277)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEECC------CC---------------------------------
T ss_conf             9899918999869999999999999972--998999769------99---------------------------------


Q ss_pred             CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             301110123456745699999999863998899948825789999999999851899628852
Q gi|254780227|r  111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL  173 (426)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi  173 (426)
                                  +.+..-..++++...++|++++..-|.....  ...+.+.+  .+||||.+
T Consensus        40 ------------d~~~q~~~i~~~i~~~vDgIii~p~~~~~~~--~~~~~a~~--~gIPvv~~   86 (277)
T cd06319          40 ------------SAKKELENLRTAIDKGVSGIIISPTNSSAAV--TLLKLAAQ--AKIPVVIA   86 (277)
T ss_pred             ------------CHHHHHHHHHHHHHCCCCEEEECCCCCCCHH--HHHHHHHH--CCCCEEEE
T ss_conf             ------------9999999999999669987996477741109--99999997--69978998


No 201
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=30.44  E-value=36  Score=14.10  Aligned_cols=129  Identities=13%  Similarity=0.087  Sum_probs=75.7

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             79998368775148999999999999856997899983836601079913046269888874640787400336788865
Q gi|254780227|r   31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTN  110 (426)
Q Consensus        31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~  110 (426)
                      |||++..+..-+=..+.+.|+-..|+.+  |+++.-+ ++     +++                                
T Consensus         1 kIa~~~~~~~~~f~~~~~~G~~~~A~~~--G~~~~v~-d~-----~~d--------------------------------   40 (273)
T cd06305           1 RIAVVRYGGSGDFDQAYLAGTKAEAEAL--GGDLRVY-DA-----GGD--------------------------------   40 (273)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEE-CC-----CCC--------------------------------
T ss_conf             9899971788979999999999999974--9989997-39-----999--------------------------------


Q ss_pred             CCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-CCCC
Q ss_conf             301110123456745699999999863998899948825789999999999851899628852222347722211-4633
Q gi|254780227|r  111 FSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH-QSLG  189 (426)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td-~tiG  189 (426)
                                   .+..-..++++-..++|++++...|.+.... .|.+ +.+  -+||||.    +|++++... .+++
T Consensus        41 -------------~~~Q~~~i~~~i~~~vDgIii~p~d~~~~~~-~l~~-a~~--aGIPVV~----~d~~~~~~~~~~v~   99 (273)
T cd06305          41 -------------DAKQADQIDQAIAQKVDAIIIQHGRAEVLKP-WVKR-ALD--AGIPVVA----FDVDSDNPKVNNTT   99 (273)
T ss_pred             -------------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHH-HHHH-HHH--CCCCEEE----ECCCCCCCCCCEEE
T ss_conf             -------------9999999999998599999994687144489-9999-998--5997899----81776767752783


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             565999999999999987751666169999769
Q gi|254780227|r  190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMG  222 (426)
Q Consensus       190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMG  222 (426)
                      .|-. .....+...+... ...+..+.++...|
T Consensus       100 ~dn~-~~g~~~~~~l~~~-~~g~~~v~~~~~~~  130 (273)
T cd06305         100 QDDY-SLARLSLDQLVKD-LGGKGNVGYVNVAG  130 (273)
T ss_pred             CCCH-HHHHHHHHHHHHH-HCCCCEEEEEECCC
T ss_conf             1569-9999999999998-29997599997689


No 202
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=30.32  E-value=36  Score=14.09  Aligned_cols=152  Identities=18%  Similarity=0.086  Sum_probs=68.3

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCH---------HHCCCCCCCEECCCCCHHHHHHHHHCC
Q ss_conf             76337999836877514899999999999985699789998383---------660107991304626988887464078
Q gi|254780227|r   27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFG---------YQGLLLDDKITITEDMRQNAEQLLSYG   97 (426)
Q Consensus        27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G---------~~GL~~~~~~~l~~l~~~~v~~~~~~G   97 (426)
                      |++|||+|.=-|.-+|+.|+ +-.+-+.+..   +..-+.-...         +.|.+++    +   +...+       
T Consensus         1 m~~rrVaItG~g~~~p~g~~-~e~~w~~L~~---G~s~i~~~~~~~~~~~~~~~~g~i~~----f---d~~~~-------   62 (414)
T PRK08722          1 MSKRRVVVTGMGMLSPVGNT-VESSWKALLA---GQSGIVNIEHFDTTNFSTRFAGLVKD----F---NCEEY-------   62 (414)
T ss_pred             CCCCCEEEECCEEECCCCCC-HHHHHHHHHC---CCCCEEECCCCCCCCCCCCEEEECCC----C---CHHHC-------
T ss_conf             99997999876868979599-9999999973---99836637845655798866577288----8---94675-------


Q ss_pred             CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCC--------EEEEEC-CHHHHHHHHHHHHHHHHCC-CC
Q ss_conf             7400336788865301110123456745699999999863998--------899948-8257899999999998518-99
Q gi|254780227|r   98 GSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVT--------ILHTIG-GDDTNTTACDLLRYLKEKN-YN  167 (426)
Q Consensus        98 Gt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id--------~Li~IG-GdgS~~~a~~L~e~~~~~~-~~  167 (426)
                         +          .....+.......--+..+.+-++.-+++        .-+++| +.+.+.......+.+.+++ ..
T Consensus        63 ---~----------~~~~~~~~d~~~~~~l~aa~~Al~dAGl~~~~~~~~r~Gv~vG~~~~~~~~~~~~~~~~~~~~~~~  129 (414)
T PRK08722         63 ---M----------SKKDARKMDLFIQYGIAAGIQALDDSGLEVTEENAHRIGVAIGSGIGGLGLIEAGHKALVEKGPRK  129 (414)
T ss_pred             ---C----------CHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf             ---8----------999998669999999999999999628994324656447999405671777999999998548654


Q ss_pred             CEEEEECCCCCCCCC--------CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             628852222347722--------211463356599999999999998775
Q gi|254780227|r  168 ITVVGLPKTIDNDII--------PIHQSLGALTAAQVSACFFDNISNERS  209 (426)
Q Consensus       168 i~vigiPKTIDNDi~--------~td~tiGfdTA~~~~a~~i~~l~~~A~  209 (426)
                      +.-..+|.|+.|-+.        ..-.++-.+|||.-...+|...+.--.
T Consensus       130 ~~p~~~~~~~~~~~a~~is~~~gl~Gp~~tv~tACsS~l~Ai~~A~~~I~  179 (414)
T PRK08722        130 ISPFFVPSTIVNMIAGHMSIMRGLRGPNIAISTACTTGLHNIGHAARMIA  179 (414)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             58422224577899999999839989872535540789999999999986


No 203
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=30.05  E-value=37  Score=14.06  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=26.1

Q ss_pred             EEEEECCHH-HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf             899948825-7899999999998518996288522223477222
Q gi|254780227|r  141 ILHTIGGDD-TNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIP  183 (426)
Q Consensus       141 ~Li~IGGdg-S~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~  183 (426)
                      ..+++|||| ++.....=......++.+|.+|.    +||-+.+
T Consensus        90 ~Viv~gGDG~~~dIG~~~l~ha~~Rn~dit~iv----~DNevYg  129 (294)
T COG1013          90 SVIVIGGDGDAYDIGGNHLIHALRRNHDITYIV----VDNEVYG  129 (294)
T ss_pred             EEEEEECCCHHHHCCHHHHHHHHHCCCCEEEEE----ECCEECC
T ss_conf             499990560775410167789997079859999----7770045


No 204
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.78  E-value=37  Score=14.03  Aligned_cols=12  Identities=0%  Similarity=0.005  Sum_probs=4.5

Q ss_pred             ECCCCCCCCCCC
Q ss_conf             418861235589
Q gi|254780227|r  346 QKSGYFARSAPS  357 (426)
Q Consensus       346 ~~lGy~qRgg~P  357 (426)
                      .++-|.++++.|
T Consensus       195 dDLp~l~~~~~~  206 (211)
T COG3222         195 DDLPLLRDCCAP  206 (211)
T ss_pred             CHHHHHHHHCCC
T ss_conf             301789986341


No 205
>PRK12342 putative electron transfer flavoprotein YdiQ; Provisional
Probab=29.62  E-value=37  Score=14.01  Aligned_cols=53  Identities=13%  Similarity=0.087  Sum_probs=41.3

Q ss_pred             HHHHHHHHCCCCEEEEE-----CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             99999986399889994-----8825789999999999851899628852222347722
Q gi|254780227|r  129 VSAHHLMQSGVTILHTI-----GGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII  182 (426)
Q Consensus       129 ~~~~~l~~~~Id~Li~I-----GGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~  182 (426)
                      .+.+..-..|-|..+.+     +|-|++.+|..|+++.++.++++-+.| =.|+|.|-.
T Consensus        68 ~~~r~alAmGaD~a~li~d~~~~g~D~~~tA~~La~~i~~~~~DLVl~G-~~s~D~~tg  125 (254)
T PRK12342         68 KVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFG-EGSGDLYAQ  125 (254)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE-CCCCCCCCC
T ss_conf             9999999737988999845765666889999999999998396999993-621248988


No 206
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=29.37  E-value=38  Score=13.98  Aligned_cols=31  Identities=16%  Similarity=0.097  Sum_probs=25.7

Q ss_pred             CEEEEEECCC----CCCHHHHHHHHHCCCCCCCHH
Q ss_conf             1699997698----742899998740143323101
Q gi|254780227|r  214 SLIIHEVMGR----NCGWLTAYSAHCYLNMIQDRN  244 (426)
Q Consensus       214 ~~~iVEvMGR----~aG~LAl~~ala~ga~~~~i~  244 (426)
                      +=|++.-||-    |+|.||...|.|++.++.+.+
T Consensus       497 ~~HvfqNlGDGTy~HSG~LAIRaaVAag~niTYKi  531 (1155)
T PRK09193        497 EKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKI  531 (1155)
T ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf             96479978776302031799999997599738999


No 207
>KOG2178 consensus
Probab=29.32  E-value=13  Score=17.04  Aligned_cols=56  Identities=23%  Similarity=0.220  Sum_probs=36.7

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH--HHHHHHHHHHHHH
Q ss_conf             3998899948825789999999999851899628852222347722211463356599--9999999999987
Q gi|254780227|r  137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA--QVSACFFDNISNE  207 (426)
Q Consensus       137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~--~~~a~~i~~l~~~  207 (426)
                      ..+|.+|++|||||.--|..|-+   .   .+|=         =+++..=|+||-|--  ....+.+.++...
T Consensus       167 ~~~D~iItLGGDGTvL~aS~LFq---~---~VPP---------V~sFslGslGFLtpf~f~~f~~~l~~v~~~  224 (409)
T KOG2178         167 NRFDLIITLGGDGTVLYASSLFQ---R---SVPP---------VLSFSLGSLGFLTPFPFANFQEQLARVLNG  224 (409)
T ss_pred             CCEEEEEEECCCCCEEEEHHHHC---C---CCCC---------EEEEECCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             12569999668864887546446---7---8997---------588605873245566478999999999637


No 208
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263   Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.   This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=29.16  E-value=38  Score=13.96  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             456999999998639988999488
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGG  147 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGG  147 (426)
                      .+.+++.++-..++|+|++|+.|=
T Consensus        18 f~~Le~li~~~~~~G~da~V~~GT   41 (288)
T TIGR00674        18 FAALEKLIDFQIENGTDAIVVVGT   41 (288)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCC
T ss_conf             889999999899707985897135


No 209
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=29.14  E-value=38  Score=13.96  Aligned_cols=28  Identities=18%  Similarity=0.185  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             699999999863998899948825789999
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIGGDDTNTTAC  155 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~  155 (426)
                      .+.++.+-+++++||  ++.||+-|+.-|+
T Consensus        14 ~iP~A~~iFr~y~iD--FCCGG~~~L~~Aa   41 (221)
T COG2846          14 SIPRAAEIFRSYDID--FCCGGKVTLERAA   41 (221)
T ss_pred             HCCCHHHHHHHCCCC--EECCCHHHHHHHH
T ss_conf             574389999983986--2058719999999


No 210
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=29.07  E-value=38  Score=13.95  Aligned_cols=44  Identities=25%  Similarity=0.370  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             45699999999863998899948825789999999999851899628852
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL  173 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi  173 (426)
                      ++.++.+.+-+++-+-|++-+-||.........|.+.      +|||+|-
T Consensus        94 ~~a~~nA~rlmke~GadaVKlEgg~~~~~~I~~l~~~------GIPV~gH  137 (261)
T pfam02548        94 EQALRNAARLMKEAGADAVKLEGGAEMADTIKALVDR------GIPVMGH  137 (261)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC------CCCEEEE
T ss_conf             9999999999985499989978885358999999988------9976534


No 211
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=28.28  E-value=39  Score=13.86  Aligned_cols=117  Identities=15%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCC---CC-CCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf             751489999999999998569978999838366010---79-91304626988887464078740033678886530111
Q gi|254780227|r   40 IAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLL---LD-DKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCI  115 (426)
Q Consensus        40 ~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~---~~-~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~  115 (426)
                      .-|-++.+|..++.+++   ++.++|.+=-|..|.+   +. +.....-.+++.+..+...|-..|..+.-.        
T Consensus        31 ~lp~I~~~i~~~~~~l~---~gGRl~Y~GAGTSGrlgvlDa~E~~PTFg~~~~~v~gliAGG~~al~~~~E~--------   99 (257)
T cd05007          31 ALPQIARAVDAAAERLR---AGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEG--------   99 (257)
T ss_pred             HHHHHHHHHHHHHHHHH---CCCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHEEEEECCHHHHHHCHHC--------
T ss_conf             89999999999999996---5982899878605889998899739877999899110243889999645311--------


Q ss_pred             HCCCCCCCHHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             01234567456999999998639---98899948825789999999999851899628852222
Q gi|254780227|r  116 KRGLIKKDENPLEVSAHHLMQSG---VTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKT  176 (426)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~---Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT  176 (426)
                             -|++.+...+.+.+++   -|.+|.|---|+--...-..++.++.  +...++|.-.
T Consensus       100 -------aED~~~~g~~dl~~~~~~~~DvVIgIsaSG~TPyv~~aL~~A~~~--ga~ti~I~~n  154 (257)
T cd05007         100 -------AEDDEEAGAADLQAINLTERDVVIGIAASGRTPYVLGALRYARAR--GALTIGIACN  154 (257)
T ss_pred             -------CCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHC--CCCEEEEECC
T ss_conf             -------256689999999980899645899994699985999999999986--9957876438


No 212
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=27.98  E-value=40  Score=13.83  Aligned_cols=27  Identities=15%  Similarity=0.001  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCH
Q ss_conf             9999998775166616999976987428
Q gi|254780227|r  200 FFDNISNERSATPRSLIIHEVMGRNCGW  227 (426)
Q Consensus       200 ~i~~l~~~A~s~~~~~~iVEvMGR~aG~  227 (426)
                      ....+...|.. .++=+++|.-+|+...
T Consensus        78 ~~~~~~~~a~~-~r~n~iiegT~~~~~~  104 (191)
T pfam06414        78 WVEKLIDYAIE-RGYNIILEGTLRSPDV  104 (191)
T ss_pred             HHHHHHHHHHH-CCCCEEEECCCCCHHH
T ss_conf             99999999997-5999898577789799


No 213
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=27.94  E-value=40  Score=13.82  Aligned_cols=38  Identities=21%  Similarity=0.158  Sum_probs=23.6

Q ss_pred             HHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             98639988999488257899999999998518996288
Q gi|254780227|r  134 LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVV  171 (426)
Q Consensus       134 l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vi  171 (426)
                      |++-+|=.||-.=|-|--+++.+|+.++.+++..+-++
T Consensus       203 l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LV  240 (407)
T PRK12726        203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI  240 (407)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             03690899989998978999999999999779917999


No 214
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=27.93  E-value=40  Score=13.82  Aligned_cols=44  Identities=11%  Similarity=-0.125  Sum_probs=30.5

Q ss_pred             EEEEEECCC----CCCHHHHHHHHHCCCCCCCHHHH-HHHHHHCCCCCC
Q ss_conf             699997698----74289999874014332310111-111100014576
Q gi|254780227|r  215 LIIHEVMGR----NCGWLTAYSAHCYLNMIQDRNYI-DGFIFSPDFKGI  258 (426)
Q Consensus       215 ~~iVEvMGR----~aG~LAl~~ala~ga~~~~i~~~-~~~~~~~~~~~~  258 (426)
                      =++|..||=    |+|.+|+..|.+.+.++.+++.. .....+..+..|
T Consensus       422 ~~v~a~iGDgTffHSG~~al~~AV~~~~nit~~ILdN~~tAMTGgQ~~p  470 (595)
T TIGR03336       422 QRIVAFIGDSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNP  470 (595)
T ss_pred             CCEEEEECCCCCHHCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             7379991366101056599999997699869999868850434899999


No 215
>KOG1357 consensus
Probab=27.88  E-value=40  Score=13.82  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=13.8

Q ss_pred             HHHHHHHHHCCCCE---EEEECCHHHHHHHHHHH
Q ss_conf             99999998639988---99948825789999999
Q gi|254780227|r  128 EVSAHHLMQSGVTI---LHTIGGDDTNTTACDLL  158 (426)
Q Consensus       128 ~~~~~~l~~~~Id~---Li~IGGdgS~~~a~~L~  158 (426)
                      +++++.+.++++..   -..+|-.+..+....|.
T Consensus       158 ~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~  191 (519)
T KOG1357         158 EASLKSFDKYGLSRCSSRHEAGTTEEHKELEELV  191 (519)
T ss_pred             HHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHH
T ss_conf             1899999984633366420036378887899999


No 216
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.82  E-value=40  Score=13.81  Aligned_cols=40  Identities=18%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             EEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             899948825789999999999851899628852222347722
Q gi|254780227|r  141 ILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII  182 (426)
Q Consensus       141 ~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~  182 (426)
                      .+++|-+|..-+.-..|++..+  .-++++.|-|+-|++++.
T Consensus         2 t~vliR~Ds~~Kil~ALaDleR--yagiki~gkPrii~p~~a   41 (125)
T COG1844           2 TIVLIRADSYDKILTALADLER--YAGIKIRGKPRIIPPELA   41 (125)
T ss_pred             EEEEEECCCHHHHHHHHHHHHH--HCCCEEECCCCCCCHHHH
T ss_conf             1799953748899999999998--558566057753582467


No 217
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.45  E-value=40  Score=13.77  Aligned_cols=24  Identities=13%  Similarity=-0.061  Sum_probs=14.5

Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             368775148999999999999856
Q gi|254780227|r   36 TAGGIAPCLSSIIGMLINHYNKIL   59 (426)
Q Consensus        36 tsGG~aPG~N~~I~~iv~~a~~~~   59 (426)
                      .||.-++-.....+++-.++..+|
T Consensus         8 lSG~~a~~G~~~~~g~~lav~~iN   31 (340)
T cd06349           8 LTGDNAQYGTQWKRAFDLALDEIN   31 (340)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             878416556999999999999998


No 218
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=27.04  E-value=41  Score=13.72  Aligned_cols=70  Identities=17%  Similarity=0.051  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHH---HCCCCEEEEECCHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             456999999998---639988999488257899-9999999985189962885222234772221146335659999999
Q gi|254780227|r  124 ENPLEVSAHHLM---QSGVTILHTIGGDDTNTT-ACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSAC  199 (426)
Q Consensus       124 ~~~~~~~~~~l~---~~~Id~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~  199 (426)
                      ++++.++++.++   +.+.|++|+.=|-|||.- |..|+=.+  .+.+-|||-.-.-..-|-+.+|       |..+...
T Consensus       134 P~~W~~iA~~i~~~~~~g~DG~VItHGTDTMayTAsALSFml--~~~~KPVVlTGSQrp~~~~sSD-------a~~NL~~  204 (421)
T PRK04183        134 PEYWQEIAEAVAEEIENGADGVVVAHGTDTMHYTAAALSFML--RKTPVPIVFVGAQRSSDRPSSD-------AAMNLIA  204 (421)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHH--HCCCCCEEEECCCCCCCCCCCC-------HHHHHHH
T ss_conf             899999999999986668987999216752999999999996--3899988996877788886860-------7999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780227|r  200 FFD  202 (426)
Q Consensus       200 ~i~  202 (426)
                      ++.
T Consensus       205 Av~  207 (421)
T PRK04183        205 AVL  207 (421)
T ss_pred             HHH
T ss_conf             999


No 219
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=26.99  E-value=41  Score=13.72  Aligned_cols=81  Identities=12%  Similarity=0.084  Sum_probs=49.4

Q ss_pred             HHHHHHHHHH-HHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHH-HCCCC--CCC-CCCCCCCCCCHHHHCCCCC
Q ss_conf             9999999999-85699789998383660107991304626988887464-07874--003-3678886530111012345
Q gi|254780227|r   47 IIGMLINHYN-KILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLL-SYGGS--PIG-NSRVKLTNFSDCIKRGLIK  121 (426)
Q Consensus        47 ~I~~iv~~a~-~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~-~~GGt--~Lg-tsR~~~~~~~~~~~~~~~~  121 (426)
                      -++.++..+. .+  +..++.+-.|-.++   .   ..+.+...+..+. +.+|.  +-+ |||..              
T Consensus        32 ~l~~~~~~~~~~~--~p~~~svt~~d~~~---~---~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~--------------   89 (291)
T COG0685          32 NLEKLLERLAILL--GPGFDSVTIPDGSR---G---TPRRTSVAAAALLKRTGGIEPIPHLTCRDR--------------   89 (291)
T ss_pred             CHHHHHHHHHHHH--CCCEEEEEECCCCC---C---CCCCCHHHHHHHHHHCCCCCEEEEEECCCC--------------
T ss_conf             7999999988741--88716897379997---8---787679999999973379831347514688--------------


Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             67456999999998639988999488257
Q gi|254780227|r  122 KDENPLEVSAHHLMQSGVTILHTIGGDDT  150 (426)
Q Consensus       122 ~~~~~~~~~~~~l~~~~Id~Li~IGGdgS  150 (426)
                       +...+..+++.+.++||..++.++||..
T Consensus        90 -n~~~i~~~l~~~~~~Gi~~ilaLrGDpp  117 (291)
T COG0685          90 -NRIEIISILKGAAALGIRNILALRGDPP  117 (291)
T ss_pred             -CHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             -9899999999999818855999458987


No 220
>cd02064 Flavokinase_C Riboflavin kinase (Flavokinase). This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin. 5'-phospho transferase and ATP:FMN-adenylyltransferase activities . The C-terminal domain has FMN-adenylyltransferase activitie. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD . A domain has been identified in the N-terminal region that is well conserved in all the bacterial FAD synthetases.This domain has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases .
Probab=26.98  E-value=41  Score=13.72  Aligned_cols=58  Identities=21%  Similarity=0.167  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf             99999999863998899948825789--999999999851899628852222347722211463356599
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNT--TACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA  194 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~--~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~  194 (426)
                      .+.-.+.|++++||.++++-=+..+.  .+..+-+.... ++++..|.         .|.|+.||++-.-
T Consensus        57 ~~~k~~~l~~~gid~~~~i~F~~~~~~ls~~~Fi~~~l~-~l~~~~iV---------vG~Df~FG~~r~G  116 (179)
T cd02064          57 LEEKLELLAALGVDYLLVLPFDKEFASLSAEEFVKDLLV-KLNAKHVV---------VGFDFRFGKGRSG  116 (179)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHHHHHH-CCCCEEEE---------ECCCCCCCCCCCC
T ss_conf             999999998669999998447888863999999998741-47963999---------7773025789887


No 221
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=26.38  E-value=42  Score=13.65  Aligned_cols=124  Identities=10%  Similarity=0.079  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999863998899948825789999999999851899628852222347-72221146335659999999999999
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDN-DIIPIHQSLGALTAAQVSACFFDNIS  205 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDN-Di~~td~tiGfdTA~~~~a~~i~~l~  205 (426)
                      -...++.+...++|++|++|.+-.........     ++ ..++|-+-...++ +++    ++.+|- ..-..++++.|.
T Consensus       112 e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~~~-----~~-~~pvv~~~~~~~~~~~~----~V~~D~-~~~~~~a~~~L~  180 (341)
T PRK11041        112 EKTFVNLIITKQIDGMLLLGSRLPFDASKEEQ-----RN-LPPMVMANEFAPELELP----TVHIDN-LTAAFEAVNYLY  180 (341)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-----CC-CCCEEEECCCCCCCCCC----EEEECH-HHHHHHHHHHHH
T ss_conf             99999988754877699956889847799997-----08-99699976878888999----899776-999999999999


Q ss_pred             HHHHHCCCCEEEEEE---CC----CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             877516661699997---69----87428999987401433231011111110001457652328786559899999999
Q gi|254780227|r  206 NERSATPRSLIIHEV---MG----RNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLS  278 (426)
Q Consensus       206 ~~A~s~~~~~~iVEv---MG----R~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~  278 (426)
                      .  .. |+++.++--   +.    |..||..+....                    +...+-.++.+..++.+.-.+.++
T Consensus       181 ~--~G-hr~I~~i~~~~~~~~~~~R~~G~~~al~~~--------------------gl~~~~~~i~~~~~~~~~g~~~~~  237 (341)
T PRK11041        181 E--LG-HKRIACIAGPEEMPLCHYRLQGYVQALRRC--------------------GITVDPQYIARGDFTFEAGAKAMQ  237 (341)
T ss_pred             H--CC-CCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------------------CCCCCCCEEEECCCCHHHHHHHHH
T ss_conf             7--49-976999968987768999999999999986--------------------999991048954676799999999


Q ss_pred             HHHHCC
Q ss_conf             985028
Q gi|254780227|r  279 KVMEKK  284 (426)
Q Consensus       279 ~~~~~~  284 (426)
                      +.++..
T Consensus       238 ~ll~~~  243 (341)
T PRK11041        238 QLLELP  243 (341)
T ss_pred             HHHHCC
T ss_conf             999559


No 222
>PRK05380 pyrG CTP synthetase; Validated
Probab=26.33  E-value=42  Score=13.64  Aligned_cols=68  Identities=10%  Similarity=0.083  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC----CHHHH-----HHHHHCCCCCCCHHHHHHH----HHHCCCCCCCC
Q ss_conf             99999999999987751666169999769874----28999-----9874014332310111111----10001457652
Q gi|254780227|r  194 AQVSACFFDNISNERSATPRSLIIHEVMGRNC----GWLTA-----YSAHCYLNMIQDRNYIDGF----IFSPDFKGIDG  260 (426)
Q Consensus       194 ~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~a----G~LAl-----~~ala~ga~~~~i~~~~~~----~~~~~~~~~d~  260 (426)
                      .+.+.+.++++..-    .+.+- +-+.|.+.    .|+.+     ++|++.+...-+.--+.+.    ......+..|-
T Consensus       272 l~~W~~~v~~~~~~----~~~V~-IaiVGKYv~L~DaY~Sv~EAL~Hag~~~~~kv~i~wIdse~le~~~~~~~L~~~dG  346 (534)
T PRK05380        272 LSEWEDLVERIKNP----KGEVT-IALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKDVDG  346 (534)
T ss_pred             HHHHHHHHHHHHCC----CCCEE-EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCHHHHHHCCCE
T ss_conf             99999999987587----65569-99863136786049999999998888638742279988576366467777631882


Q ss_pred             CCCCCC
Q ss_conf             328786
Q gi|254780227|r  261 VYLPEM  266 (426)
Q Consensus       261 iliPE~  266 (426)
                      |++|=.
T Consensus       347 IlVPGG  352 (534)
T PRK05380        347 ILVPGG  352 (534)
T ss_pred             EEECCC
T ss_conf             995787


No 223
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=26.01  E-value=43  Score=13.60  Aligned_cols=50  Identities=16%  Similarity=0.020  Sum_probs=28.5

Q ss_pred             HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf             999863998899948825789999999999851899628852222347722211463356599
Q gi|254780227|r  132 HHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA  194 (426)
Q Consensus       132 ~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~  194 (426)
                      +.+++++-+++|.-||=|+-..+....+.             ++....++|-.=.|.|++.-+
T Consensus        37 ~~i~~~~p~~IilS~GPg~p~~~~~~~~~-------------~~~~~~~iPILGIClG~Q~ia   86 (192)
T PRK08857         37 AGIEALNPSHLVISPGPCTPNEAGISLQA-------------IEHFAGKLPILGVCLGHQAIA   86 (192)
T ss_pred             HHHHHCCCCEEEECCCCCCHHHCCCCHHH-------------HHHHCCCCCEEEECHHHHHHH
T ss_conf             99984297959998999996782861466-------------997357999899879999999


No 224
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=25.99  E-value=43  Score=13.60  Aligned_cols=40  Identities=25%  Similarity=0.199  Sum_probs=25.2

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEE
Q ss_conf             76337999836877514899999999999985-699789998
Q gi|254780227|r   27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKI-LPKAELIYY   67 (426)
Q Consensus        27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~-~~~~~v~G~   67 (426)
                      |+++||+||. ||++|==.-.+.+.-.-+..+ ..+++|+-+
T Consensus         1 M~k~kI~Vl~-GG~S~EreVSl~Sg~~v~~~L~~~~y~v~~i   41 (344)
T PRK01966          1 MMKIRVALLF-GGRSAEHEVSLVSAKNILKALDKDKFEVIPI   41 (344)
T ss_pred             CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             9976899995-8788218999999999999761508859999


No 225
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=25.65  E-value=44  Score=13.56  Aligned_cols=51  Identities=16%  Similarity=0.056  Sum_probs=31.6

Q ss_pred             HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             9998639988999488257899999999998518996288522223477222114633565999
Q gi|254780227|r  132 HHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQ  195 (426)
Q Consensus       132 ~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~  195 (426)
                      +.+++++-|++|.-||=|+-..+....+.             .+...+++|---.|.|++.-+.
T Consensus        37 ~~i~~~~pd~IiLSpGPg~p~~~~~~~~~-------------~~~~~~~iPILGIClG~Q~ia~   87 (195)
T PRK07649         37 SDIENMKPDFLMISPGPCSPNEAGISMEV-------------IRYFAGKIPIFGVCLGHQSIAQ   87 (195)
T ss_pred             HHHHHCCCCEEEECCCCCCHHHCCCCHHH-------------HHHHCCCCCEEEECHHHHHHHH
T ss_conf             99984198989988999995784761467-------------9975289978430299999998


No 226
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.60  E-value=44  Score=13.56  Aligned_cols=40  Identities=28%  Similarity=0.480  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             999999998639988999488257899999999998518996288522
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLP  174 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiP  174 (426)
                      -+++++-.+..+  ..+.||.|.|.-.+..|+.      ++|+||||-
T Consensus       257 aE~~~el~~~~~--lvvTvGDDTT~vagdIl~R------fgipiiGIt  296 (367)
T COG4069         257 AERSYELIEGAG--LVVTVGDDTTEVAGDILYR------FGIPIIGIT  296 (367)
T ss_pred             HHHHHHHHCCCC--EEEEECCCCHHHHHHHHHH------CCCCEEECC
T ss_conf             467787640586--2899768603577888986------398078535


No 227
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=25.20  E-value=44  Score=13.51  Aligned_cols=12  Identities=17%  Similarity=0.304  Sum_probs=6.2

Q ss_pred             CCEEEEEEEECC
Q ss_conf             763379998368
Q gi|254780227|r   27 MVAHKVAFLTAG   38 (426)
Q Consensus        27 ~~~krI~IltsG   38 (426)
                      ...|||-|+=||
T Consensus         5 ~dikkvLiiGsG   16 (1068)
T PRK12815          5 TDIKKILVIGSG   16 (1068)
T ss_pred             CCCCEEEEECCC
T ss_conf             778889998988


No 228
>pfam07859 Abhydrolase_3 alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.
Probab=24.96  E-value=45  Score=13.48  Aligned_cols=44  Identities=16%  Similarity=0.136  Sum_probs=32.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCC-HHHHHHHHH
Q ss_conf             35659999999999999877516---661699997698742-899998740
Q gi|254780227|r  189 GALTAAQVSACFFDNISNERSAT---PRSLIIHEVMGRNCG-WLTAYSAHC  235 (426)
Q Consensus       189 GfdTA~~~~a~~i~~l~~~A~s~---~~~~~iVEvMGR~aG-~LAl~~ala  235 (426)
                      -|.++++-+..+++-+...+...   ++++++   ||-+|| |||+..++.
T Consensus        44 ~~p~~~~D~~~a~~~l~~~~~~~~~d~~~I~l---~G~SAGG~La~~~~~~   91 (209)
T pfam07859        44 PFPAAIEDAYAALRWLAEHAAELGADPSRIAV---AGDSAGGNLAAALALR   91 (209)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE---EEECCCHHHHHHHHHH
T ss_conf             88279999999999999989980999542699---9978307799999999


No 229
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an 
Probab=24.88  E-value=45  Score=13.47  Aligned_cols=74  Identities=15%  Similarity=0.177  Sum_probs=47.4

Q ss_pred             CCCCHHHHHHHHHHHHHCC---CCEEE-EECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             4567456999999998639---98899-9488257899999999998518996288522223477222114633565999
Q gi|254780227|r  120 IKKDENPLEVSAHHLMQSG---VTILH-TIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQ  195 (426)
Q Consensus       120 ~~~~~~~~~~~~~~l~~~~---Id~Li-~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~  195 (426)
                      +.+.+..++.+++..++.+   -|++| +-||=||--.|+.|.+.     +++..+.|  |.||-..       .+.|.+
T Consensus        38 w~~r~~~l~~l~~~~r~~~~~~YDCiv~vSGGkDS~y~~~~l~~~-----~gl~pL~v--t~d~~~~-------t~~g~~  103 (343)
T TIGR03573        38 WDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKK-----LGLNPLLV--TVDPGWN-------TELGVK  103 (343)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHH-----HCCCEEEE--EECCCCC-------CHHHHH
T ss_conf             688999999999999714899886898688772899999999998-----29925999--8359877-------989999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999987
Q gi|254780227|r  196 VSACFFDNISNE  207 (426)
Q Consensus       196 ~~a~~i~~l~~~  207 (426)
                      ++...+..+-.|
T Consensus       104 Ni~~l~~~lgvD  115 (343)
T TIGR03573       104 NLNNLIKKLGFD  115 (343)
T ss_pred             HHHHHHHHCCCC
T ss_conf             999999836998


No 230
>KOG0343 consensus
Probab=24.77  E-value=45  Score=13.46  Aligned_cols=128  Identities=16%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             HHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH---------HCCC---------CCCCH----HHH
Q ss_conf             3660107991304626988887464078740033678886530111---------0123---------45674----569
Q gi|254780227|r   70 GYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCI---------KRGL---------IKKDE----NPL  127 (426)
Q Consensus        70 G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~---------~~~~---------~~~~~----~~~  127 (426)
                      --.||-++.++.+++... +.-...-+|-++||.+++.-.++-.+.         .++.         +.-.-    +-+
T Consensus        80 t~kgLke~~fv~~teiQ~-~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtF  158 (758)
T KOG0343          80 TLKGLKEAKFVKMTEIQR-DTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTF  158 (758)
T ss_pred             HHHHHHHCCCCCHHHHHH-HHCCHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHH
T ss_conf             887676548756999987-6414220575000102358884465439999999971778878832699565299999999


Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC----CCCCC------------CCCC--CCC
Q ss_conf             99999998639988999488257899999999998518996288522223----47722------------2114--633
Q gi|254780227|r  128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI----DNDII------------PIHQ--SLG  189 (426)
Q Consensus       128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI----DNDi~------------~td~--tiG  189 (426)
                      +...+.=+-+...+=++|||.+----..+++      +++| .||-|.-+    |-...            ..|.  -.|
T Consensus       159 evL~kvgk~h~fSaGLiiGG~~~k~E~eRi~------~mNI-LVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMG  231 (758)
T KOG0343         159 EVLNKVGKHHDFSAGLIIGGKDVKFELERIS------QMNI-LVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMG  231 (758)
T ss_pred             HHHHHHHHCCCCCCCEEECCCHHHHHHHHHH------CCCE-EEECHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHH
T ss_conf             9999875205643113665712688997662------5776-99661789987541678787760478732088898776


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             5659999999999999
Q gi|254780227|r  190 ALTAAQVSACFFDNIS  205 (426)
Q Consensus       190 fdTA~~~~a~~i~~l~  205 (426)
                      |...++.+.+.+-.-+
T Consensus       232 Fk~tL~~Ii~~lP~~R  247 (758)
T KOG0343         232 FKKTLNAIIENLPKKR  247 (758)
T ss_pred             HHHHHHHHHHHCCHHH
T ss_conf             7888999987377233


No 231
>pfam05893 LuxC Acyl-CoA reductase (LuxC). This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components.
Probab=24.66  E-value=45  Score=13.44  Aligned_cols=74  Identities=15%  Similarity=0.104  Sum_probs=40.5

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHH-HH----HCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             399889994882578999999999-98----5189962885222234772221146335659999999999999877516
Q gi|254780227|r  137 SGVTILHTIGGDDTNTTACDLLRY-LK----EKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSAT  211 (426)
Q Consensus       137 ~~Id~Li~IGGdgS~~~a~~L~e~-~~----~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~  211 (426)
                      ..-|+.++=|||++.+....-... .+    .+++.+.+|+-|.             ....+++..+.=+-...+.|.+|
T Consensus       168 ~~aD~~v~wGGd~av~~ir~~~~~~~~~i~fg~K~Sfa~i~~~~-------------~~~~~a~~~a~Di~~~dQ~aC~S  234 (400)
T pfam05893       168 QHADVVIAWGGEEAIKWIRKHLPPGCDWIKFGPKISFAVVDPPA-------------AIDKAADGVAHDICFYDQQACSS  234 (400)
T ss_pred             HHCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCEEEEEECCHH-------------HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             86799999288999999985379998066557830499977477-------------79999999988888743522478


Q ss_pred             CCCEEEEEECCCC
Q ss_conf             6616999976987
Q gi|254780227|r  212 PRSLIIHEVMGRN  224 (426)
Q Consensus       212 ~~~~~iVEvMGR~  224 (426)
                      ++ +++||.=|..
T Consensus       235 p~-~vfve~~~~~  246 (400)
T pfam05893       235 PQ-VVFVESDDGI  246 (400)
T ss_pred             CE-EEEEECCCCC
T ss_conf             73-9999579865


No 232
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=24.39  E-value=46  Score=13.41  Aligned_cols=14  Identities=14%  Similarity=0.237  Sum_probs=7.5

Q ss_pred             CCCEEEEEEEECCC
Q ss_conf             87633799983687
Q gi|254780227|r   26 DMVAHKVAFLTAGG   39 (426)
Q Consensus        26 ~~~~krI~IltsGG   39 (426)
                      +...|||.|+=||.
T Consensus         4 ~~~ikkvLviGsGp   17 (1063)
T PRK05294          4 RTDIKKILIIGSGP   17 (1063)
T ss_pred             CCCCCEEEEECCCC
T ss_conf             77878899989882


No 233
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=24.33  E-value=46  Score=13.40  Aligned_cols=47  Identities=21%  Similarity=0.209  Sum_probs=29.2

Q ss_pred             HHHCCCCEEEEECCHHHHHHHH---HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             9863998899948825789999---9999998518996288522223477222114633565999
Q gi|254780227|r  134 LMQSGVTILHTIGGDDTNTTAC---DLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQ  195 (426)
Q Consensus       134 l~~~~Id~Li~IGGdgS~~~a~---~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~  195 (426)
                      ++..+.|++|+-||-|+.....   .+.+.+.+  .++|+.|             .|+|++--+.
T Consensus        37 ~~~~~~d~iilspGpg~p~~~~~~~~~i~~~~~--~~~PiLG-------------IClG~Qll~~   86 (187)
T pfam00117        37 LELLNPDGIIISPGPGSPGDAGGAIEAIKELRE--NKIPILG-------------ICLGHQLLAL   86 (187)
T ss_pred             HHHCCCCEEEECCCCCCHHHCCCHHHHHHHHHH--CCCCEEE-------------EEHHHHHHHH
T ss_conf             852599989991998611013458999999997--7998999-------------9888999999


No 234
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=24.11  E-value=47  Score=13.38  Aligned_cols=120  Identities=16%  Similarity=0.159  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHH---HHHHHHHHHCCCCEEEEECCH--HHCCCCCCCEE-----CCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             877514899999---999999985699789998383--66010799130-----46269888874640787400336788
Q gi|254780227|r   38 GGIAPCLSSIIG---MLINHYNKILPKAELIYYRFG--YQGLLLDDKIT-----ITEDMRQNAEQLLSYGGSPIGNSRVK  107 (426)
Q Consensus        38 GG~aPG~N~~I~---~iv~~a~~~~~~~~v~G~~~G--~~GL~~~~~~~-----l~~l~~~~v~~~~~~GGt~LgtsR~~  107 (426)
                      -||..|---+|.   ++++.     .||+|+=+..|  |+-|+..+.-.     +.+..-.++..+...+|..+.-.   
T Consensus       265 DGpVrGngkIIqELE~~Frg-----AGWnVIkviwG~~wd~Lfa~d~~g~L~~~m~e~~DgeyQ~~~~~~Gay~Re~---  336 (886)
T PRK09405        265 DGPVRGNGKIIQELEGIFRG-----AGWNVIKVIWGSRWDPLLAKDTSGKLVQRMNETVDGDYQTYKAKDGAYVREH---  336 (886)
T ss_pred             CCCCCCCCHHHHHHHHHHHH-----CCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCHHHHHHH---
T ss_conf             88626851799999998854-----7961899821516899983378566999999840378887841879999998---


Q ss_pred             CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             8653011101234567456999999998639988999488257899999999998518996288522223477
Q gi|254780227|r  108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND  180 (426)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND  180 (426)
                      +|            .....+...++.+....|..| --||-|--+--+...+...  ..+-|.|-+.|||-.-
T Consensus       337 ff------------g~~pel~~LV~~lSD~ei~~L-~rGGHD~~KvyaAy~~A~~--~kgrPTVILA~TVKGy  394 (886)
T PRK09405        337 FF------------GKYPETAALVADMSDDDIWAL-NRGGHDPRKVYAAYKAAVE--HKGQPTVILAKTIKGY  394 (886)
T ss_pred             HC------------CCCHHHHHHHHHCCHHHHHHH-HCCCCCHHHHHHHHHHHHH--CCCCCEEEEEEEEECC
T ss_conf             72------------899789999851899999986-5269998999999999973--6899859998876426


No 235
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1; InterPro: IPR004403 These proteins are translation factors that have been characterised in eukaryotes as the non-GTP-binding subunit of a cytosolic heterodimer that acts as a translation release factor for all three stop codons. Members of this orthologous family are found in Eukarya and Archaea. The name used should be eRF1 for the Archaea and aRF1 for the Eukarya. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=23.89  E-value=22  Score=15.54  Aligned_cols=174  Identities=17%  Similarity=0.164  Sum_probs=100.5

Q ss_pred             EEEECCHHHCCCCCCCEEC-CCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf             9998383660107991304-6269888874640787-4003367888653011101234567456999999998639988
Q gi|254780227|r   64 LIYYRFGYQGLLLDDKITI-TEDMRQNAEQLLSYGG-SPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTI  141 (426)
Q Consensus        64 v~G~~~G~~GL~~~~~~~l-~~l~~~~v~~~~~~GG-t~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~  141 (426)
                      |+==++-.-|+++++.+++ ..+|...-.- +..|| |.+.=.|.......+    +.....+...+.-+.+.++.++.+
T Consensus       148 vlDr~eat~g~vkG~~i~vL~~~Ts~vPgK-h~~GGQS~~Rf~RL~e~a~He----f~~kVge~a~e~fl~~~~e~klkG  222 (425)
T TIGR00108       148 VLDRKEATIGLVKGKRIEVLKKLTSGVPGK-HKAGGQSARRFERLRELAAHE----FLKKVGEVANEAFLPLDDEVKLKG  222 (425)
T ss_pred             EECCCCEEEEEEECCCEEECHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             980886079886077012231320788740-268861267899999988546----688999999886201103552468


Q ss_pred             EEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHCCCCEEEEE
Q ss_conf             99948825789999999999851899628852222347722211463356599999999999998--7751666169999
Q gi|254780227|r  142 LHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN--ERSATPRSLIIHE  219 (426)
Q Consensus       142 Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~--~A~s~~~~~~iVE  219 (426)
                      ++ +||=+-.+.=-.=.+|+. |...-.|+   .|+  |++.|+ =+||.-+++-.++++.++..  +=.-.+ |+ +=|
T Consensus       223 il-lgGp~~tK~ef~~geylh-heL~kkVl---~~v--DvsYt~-E~G~~e~ieks~~~L~~V~~~~Ek~l~q-rf-l~E  292 (425)
T TIGR00108       223 IL-LGGPGHTKEEFAEGEYLH-HELKKKVL---STV--DVSYTG-EFGIRELIEKSADVLAEVDVVREKKLVQ-RF-LKE  292 (425)
T ss_pred             EE-EECCCHHHHHHHCCCCCC-CCCCCEEE---EEE--EECCCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHH-HH-HHH
T ss_conf             99-638960356642334567-10121343---246--511067-4018999999998873362067789999-99-999


Q ss_pred             ECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             76987428999987401433231011111110001457652328786
Q gi|254780227|r  220 VMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEM  266 (426)
Q Consensus       220 vMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~  266 (426)
                      + =+.-|-+|.+     |        +.+..+....+++|..++-|.
T Consensus       293 ~-~~edGGlacY-----G--------e~evl~~L~lGAVe~LlvsE~  325 (425)
T TIGR00108       293 L-IKEDGGLACY-----G--------EDEVLKALDLGAVETLLVSED  325 (425)
T ss_pred             H-HHCCCCCEEC-----C--------HHHHHHHHHCCCCEEEEEEHH
T ss_conf             8-6416870212-----6--------699999862275011312100


No 236
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=23.86  E-value=42  Score=13.65  Aligned_cols=18  Identities=17%  Similarity=0.023  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             565999999999999987
Q gi|254780227|r  190 ALTAAQVSACFFDNISNE  207 (426)
Q Consensus       190 fdTA~~~~a~~i~~l~~~  207 (426)
                      |..|...++|++.||..+
T Consensus       481 y~Ga~~aVaEa~rNl~a~  498 (743)
T COG0046         481 YAGAKLAVAEALRNLAAT  498 (743)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             677999999999778760


No 237
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=23.63  E-value=48  Score=13.32  Aligned_cols=137  Identities=16%  Similarity=0.093  Sum_probs=74.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCC-CCCCCCCCCC
Q ss_conf             799983687751489999999999998569978999838366010799130462698888746407874-0033678886
Q gi|254780227|r   31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGS-PIGNSRVKLT  109 (426)
Q Consensus        31 rI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt-~LgtsR~~~~  109 (426)
                      ||-|+ +|=++--+++  ..+++.++..+++.+++|+ +|-.=- +.....+.     +...+.-.|-. +|..=.    
T Consensus         3 kifi~-aGE~SGD~~g--a~li~~Lk~~~~~~~~~Gi-GG~~M~-~~G~~~l~-----d~~~l~vmG~~evl~~~~----   68 (382)
T PRK00025          3 RIAIV-AGEVSGDLLG--AGLIRALKAQAPNLEFVGI-GGPRME-AAGFESLF-----DMEELAVMGLVEVLPRLP----   68 (382)
T ss_pred             EEEEE-ECCCCHHHHH--HHHHHHHHHHCCCCEEEEE-CCHHHH-HCCCCCCC-----CHHHHHHCCHHHHHHHHH----
T ss_conf             89999-0684188999--9999999831989679998-829999-76995447-----757831301999997799----


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCCC
Q ss_conf             5301110123456745699999999863998899948825789999999999851899628852-222347722211463
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL-PKTIDNDIIPIHQSL  188 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi-PKTIDNDi~~td~ti  188 (426)
                                  .--..++++.+.+++.+-|.+|.|   |+-.--.+|+..+++++.+++++.. |=++    + ..   
T Consensus        69 ------------~~~~~~~~~~~~i~~~~Pd~vi~I---D~pgFnlrlak~lkk~~~~ipvi~yv~Pqv----W-AW---  125 (382)
T PRK00025         69 ------------RLLKIRKELKRLLLAEPPDVFILI---DAPDFNLRLAKKLKKALPGIPIIHYVSPSV----W-AW---  125 (382)
T ss_pred             ------------HHHHHHHHHHHHHHHCCCCEEEEE---CCCHHHHHHHHHHHHHCCCCCEEEEECCHH----H-HC---
T ss_conf             ------------999999999999986499999997---783065999999997169998899947156----5-40---


Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             35659999999999999
Q gi|254780227|r  189 GALTAAQVSACFFDNIS  205 (426)
Q Consensus       189 GfdTA~~~~a~~i~~l~  205 (426)
                      +-. =++...+.+|.+.
T Consensus       126 r~~-R~k~~~~~~D~ll  141 (382)
T PRK00025        126 RPG-RAKKIAKATDHVL  141 (382)
T ss_pred             CCC-HHHHHHHHHHHHH
T ss_conf             641-8999999998761


No 238
>pfam01328 Peroxidase_2 Peroxidase, family 2. The peroxidases in this family do not have similarity to other peroxidases.
Probab=23.55  E-value=33  Score=14.32  Aligned_cols=11  Identities=18%  Similarity=0.468  Sum_probs=9.0

Q ss_pred             CCCCCHHHHHH
Q ss_conf             68775148999
Q gi|254780227|r   37 AGGIAPCLSSI   47 (426)
Q Consensus        37 sGG~aPG~N~~   47 (426)
                      +-||||+||+.
T Consensus        25 iR~PCPalNal   35 (298)
T pfam01328        25 SRAPCPALNAL   35 (298)
T ss_pred             CCCCCHHHHHH
T ss_conf             57887435668


No 239
>pfam08459 UvrC_HhH_N UvrC Helix-hairpin-helix N-terminal. This domain is found in the C subunits of the bacterial and archaeal UvrABC system which catalyses nucleotide excision repair in a multi-step process. UvrC catalyses the first incision on the fourth or fifth phosphodiester bond 3' and on the eighth phosphodiester bond 5' from the damage that is to be excised. The domain described here is found to the N-terminus of a helix hairpin helix (pfam00633) motif and also co-occurs with the pfam01541 catalytic domain which is found at the N-terminus of the same proteins.
Probab=23.38  E-value=48  Score=13.29  Aligned_cols=51  Identities=22%  Similarity=0.328  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHC---------CC-CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             5699999999863---------99-889994882578999999999985189962885222234
Q gi|254780227|r  125 NPLEVSAHHLMQS---------GV-TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTID  178 (426)
Q Consensus       125 ~~~~~~~~~l~~~---------~I-d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTID  178 (426)
                      +++..+.+.+.+.         .+ |-+++=||-|-+..|...   +++.+.+|+++|+-|--.
T Consensus        55 dD~~~m~evl~RR~~~~~~~~~~~PDLilIDGGkgQl~~a~~~---l~~~~~~i~vi~iaK~~~  115 (154)
T pfam08459        55 DDYASMREVLTRRFSRLLKEKLPLPDLILIDGGKGQLNAAKEV---LEELGLDIPVIGLAKGEE  115 (154)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHH---HHHCCCCCEEEEEEECCC
T ss_conf             7899999999999986541168999889975998999999999---998599952999973565


No 240
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=23.25  E-value=48  Score=13.27  Aligned_cols=34  Identities=12%  Similarity=0.256  Sum_probs=26.4

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             399889994882578999999999985189962885
Q gi|254780227|r  137 SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG  172 (426)
Q Consensus       137 ~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vig  172 (426)
                      -+..-.++|||.|.|-  ..+++++...+|.+.+.+
T Consensus        96 ~~~~~i~IIGG~G~mG--~~F~~~f~~sGy~V~ild  129 (374)
T PRK11199         96 PDLRPVVIVGGKGQLG--RLFAKMLTLSGYQVRILE  129 (374)
T ss_pred             CCCCEEEEEECCCCHH--HHHHHHHHHCCCEEEEEC
T ss_conf             9987179980798277--999999996798799616


No 241
>PRK13129 consensus
Probab=23.24  E-value=48  Score=13.27  Aligned_cols=149  Identities=16%  Similarity=0.278  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHCCCCEE--EEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC---CCCC-C-CCCCCCCHHHHHHHHH
Q ss_conf             69999999986399889--99488257899999999998518996288522223---4772-2-2114633565999999
Q gi|254780227|r  126 PLEVSAHHLMQSGVTIL--HTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI---DNDI-I-PIHQSLGALTAAQVSA  198 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~L--i~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI---DNDi-~-~td~tiGfdTA~~~~a  198 (426)
                      .++...+.+++.+-.+|  ++..|+-++.....+.+.+.+.+.++-=+|||=+=   |.-+ + -.+..+--.+-.+.+-
T Consensus         5 ri~~~F~~~k~~~~~ali~yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~   84 (267)
T PRK13129          5 AISECFEQLKKEGRCALMPFLMAGDPDLETTAEALLILQENGADLIELGIPYSDPLADGPVIQAAATRALQSGTTLEKVL   84 (267)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf             99999999997699558988707189989999999999977999999799888877658999999999997698789999


Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99999998775166616999976987428999987401433231011111110001457652328786559899999999
Q gi|254780227|r  199 CFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLS  278 (426)
Q Consensus       199 ~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~  278 (426)
                      +.+..++..   .+-.+   -+||=..=.+..  +            ...+......-+.|-+++|..|++.   .+.+.
T Consensus        85 ~~~~~~r~~---~~~Pi---vlM~Y~N~i~~~--G------------~e~F~~~~~~~GvdGvIipDLP~eE---~~~~~  141 (267)
T PRK13129         85 EMLESLKGK---LTIPI---ILFTYYNPLLNR--G------------MERFCEQAAAAGVAGLVVPDLPLEE---AEKLS  141 (267)
T ss_pred             HHHHHHHCC---CCCCE---EEEEEHHHHHHH--H------------HHHHHHHHHHCCCCEEECCCCCHHH---HHHHH
T ss_conf             999985434---78888---998610789885--5------------9999999986698757678999899---99999


Q ss_pred             HHHHCCCCE-EEEEECCCCC
Q ss_conf             985028953-8995042111
Q gi|254780227|r  279 KVMEKKGSV-AIFVSEGACR  297 (426)
Q Consensus       279 ~~~~~~~~~-vIVvsEG~~~  297 (426)
                      ...++.+-. +-.++.....
T Consensus       142 ~~~~~~gl~~I~lvaPtt~~  161 (267)
T PRK13129        142 PIAAERGIDLILLVAPTTPA  161 (267)
T ss_pred             HHHHHCCCEEEEEECCCCCH
T ss_conf             99985398168994899968


No 242
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=23.23  E-value=48  Score=13.27  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             74569999999986399889994882578999999999985189962885222234772221146335659999999999
Q gi|254780227|r  123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFD  202 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~  202 (426)
                      .++.+...+++-++.+++.+|..-|-     |+.|--.... .-.+||||||---.+ |.|.                 |
T Consensus        42 TPe~m~~ya~~a~~~g~~viIAgAGg-----AAHLPGmvAa-~T~lPViGVPv~s~~-L~Gl-----------------D   97 (162)
T COG0041          42 TPEKMFEYAEEAEERGVKVIIAGAGG-----AAHLPGMVAA-KTPLPVIGVPVQSKA-LSGL-----------------D   97 (162)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEECCCC-----HHHCCHHHHH-CCCCCEEECCCCCCC-CCCH-----------------H
T ss_conf             98999999999987897599965751-----1106202655-587986741476233-4664-----------------8


Q ss_pred             HHHHHHHHCCCCEEEEEECC----CCCCHHHHH
Q ss_conf             99987751666169999769----874289999
Q gi|254780227|r  203 NISNERSATPRSLIIHEVMG----RNCGWLTAY  231 (426)
Q Consensus       203 ~l~~~A~s~~~~~~iVEvMG----R~aG~LAl~  231 (426)
                      .|.+.. .++..+=+ -+++    .|+|.||+.
T Consensus        98 SL~SiV-QMP~GiPV-aTvaIg~a~NAallAa~  128 (162)
T COG0041          98 SLLSIV-QMPAGVPV-ATVAIGNAANAALLAAQ  128 (162)
T ss_pred             HHHHHH-CCCCCCEE-EEEEECCHHHHHHHHHH
T ss_conf             778872-18999736-88760613318999999


No 243
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380    Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=22.91  E-value=49  Score=13.23  Aligned_cols=127  Identities=17%  Similarity=0.080  Sum_probs=76.1

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf             23477222114633565999999999999987751666169999769874289999874014332310111111100014
Q gi|254780227|r  176 TIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDF  255 (426)
Q Consensus       176 TIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~  255 (426)
                      .+|-|=|..=.=-.-+.-.-+...+||-+-+-.  --.|+.|.=  |-=||-=+|.+.||.+++.-++            
T Consensus       119 p~~a~pP~P~~R~~I~~PL~tGvRaiDGlLTcG--~GQRiGIFA--~aG~GKSTLL~~i~~g~~ADv~------------  182 (430)
T TIGR02546       119 PLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCG--EGQRIGIFA--GAGVGKSTLLGMIARGASADVN------------  182 (430)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC--CCCEEEEEE--CCCCCHHHHHHHHHCCCCCCEE------------
T ss_conf             656781048767533465101466754344036--653057870--8886166899998618988789------------


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             57652328786559899999999985028953899504211111101232011222223444544355664899999999
Q gi|254780227|r  256 KGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFA  335 (426)
Q Consensus       256 ~~~d~iliPE~~~~~~~~~~~i~~~~~~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~  335 (426)
                         =+.||=|.=-+.-+|++..-.. ++++.+|||||=.= .           ...+|       +-...++-.+||.+.
T Consensus       183 ---V~ALIGERGREVREFiE~~lg~-e~~~RsVlVvsTSD-r-----------ss~eR-------~~AAy~ATaIAEYFR  239 (430)
T TIGR02546       183 ---VIALIGERGREVREFIEHLLGE-EGRKRSVLVVSTSD-R-----------SSLER-------LKAAYTATAIAEYFR  239 (430)
T ss_pred             ---EEEECCCCCHHHHHHHHHCCCH-HHCCCEEEEEECCC-C-----------CHHHH-------HHHHHHHHHHHHHHH
T ss_conf             ---9860278760478887520783-05242489960798-6-----------67999-------999878879999999


Q ss_pred             HHHCCC
Q ss_conf             871874
Q gi|254780227|r  336 NMIKAE  341 (426)
Q Consensus       336 ~~~~~~  341 (426)
                      ++.+..
T Consensus       240 DQGk~V  245 (430)
T TIGR02546       240 DQGKRV  245 (430)
T ss_pred             HCCCEE
T ss_conf             739907


No 244
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=22.83  E-value=39  Score=13.85  Aligned_cols=73  Identities=18%  Similarity=0.281  Sum_probs=36.1

Q ss_pred             HHHCCCCEEEEECCHHHHH---HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---
Q ss_conf             9863998899948825789---9999999998518996288522223477222114633565999999999999987---
Q gi|254780227|r  134 LMQSGVTILHTIGGDDTNT---TACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNE---  207 (426)
Q Consensus       134 l~~~~Id~Li~IGGdgS~~---~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~---  207 (426)
                      +.+.+-.-+++.=|-|+.-   +...+.+++..+  +..|+..|+-=|               .+.......+...-   
T Consensus        68 ~~~~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR--~~rvval~aPt~---------------~E~~qwY~qRy~~~lPa  130 (270)
T COG2326          68 VAETGQRVVIVFEGRDAAGKGGAIKRITEALNPR--GARVVALPAPTD---------------RERGQWYFQRYVAHLPA  130 (270)
T ss_pred             HHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCC--EEEEEECCCCCH---------------HHHCCHHHHHHHHHCCC
T ss_conf             9955985999996254457985167776506975--267762489784---------------76322899999986788


Q ss_pred             -------HHHCCCCEEEEEECCC
Q ss_conf             -------7516661699997698
Q gi|254780227|r  208 -------RSATPRSLIIHEVMGR  223 (426)
Q Consensus       208 -------A~s~~~~~~iVEvMGR  223 (426)
                             -+|--+|+.+.+|||=
T Consensus       131 ~GeiviFdRSwYnr~gVeRVmGf  153 (270)
T COG2326         131 AGEIVIFDRSWYNRAGVERVMGF  153 (270)
T ss_pred             CCEEEEECHHHCCCCCEEECCCC
T ss_conf             87389865122133271440256


No 245
>KOG2770 consensus
Probab=22.82  E-value=41  Score=13.76  Aligned_cols=11  Identities=0%  Similarity=0.009  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHH
Q ss_conf             89999999987
Q gi|254780227|r  327 GSWFADKFANM  337 (426)
Q Consensus       327 ~~~La~~i~~~  337 (426)
                      .+.+.+++++.
T Consensus       301 a~~I~~qLk~~  311 (401)
T KOG2770         301 AEVILKQLKDG  311 (401)
T ss_pred             HHHHHHHHHCC
T ss_conf             89999986058


No 246
>KOG1169 consensus
Probab=22.80  E-value=49  Score=13.21  Aligned_cols=93  Identities=14%  Similarity=0.040  Sum_probs=54.8

Q ss_pred             HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf             999998639988999488257899999999998518--996288522223477222114-63356599999999999998
Q gi|254780227|r  130 SAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKN--YNITVVGLPKTIDNDIIPIHQ-SLGALTAAQVSACFFDNISN  206 (426)
Q Consensus       130 ~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~--~~i~vigiPKTIDNDi~~td~-tiGfdTA~~~~a~~i~~l~~  206 (426)
                      .+..+.+..=..+++.|||||..=...-.+...+.+  +.=||--+|-==+|||.-... ==||+.+-+.....+.++..
T Consensus       315 gL~l~~~~~~~riLVcGGDGTvGWVL~~i~~~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~  394 (634)
T KOG1169         315 GLTLFRDVPDFRILVCGGDGTVGWVLGCIDKLNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEE  394 (634)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             67798748763499954787303356558876424557899738975678885176547778887611348999976431


Q ss_pred             HHHHCCCCEEEEEECC
Q ss_conf             7751666169999769
Q gi|254780227|r  207 ERSATPRSLIIHEVMG  222 (426)
Q Consensus       207 ~A~s~~~~~~iVEvMG  222 (426)
                      .....-.||-|.-.|.
T Consensus       395 a~v~~lDrW~v~v~~~  410 (634)
T KOG1169         395 APVTKLDRWKVLVEPQ  410 (634)
T ss_pred             CCCEECCEEEEEEECC
T ss_conf             6532112015786145


No 247
>pfam02457 DisA_N DisA bacterial checkpoint controller nucleotide-binding. The DisA protein is a bacterial checkpoint protein that dimerizes into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, pfam10635, that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, pfam00633, the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branch
Probab=22.70  E-value=50  Score=13.20  Aligned_cols=64  Identities=14%  Similarity=0.183  Sum_probs=40.7

Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999998639988999488257899999999998518996288522223477222114633565999999999999987
Q gi|254780227|r  128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNE  207 (426)
Q Consensus       128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~  207 (426)
                      ..+++.+.+.++.+|++++.++.+...   .    ..  +++       ||.++.               .+.+.++...
T Consensus         2 ~~a~~~l~~~~iGALiVi~~~~~l~~~---~----~~--G~~-------ida~~s---------------~elL~~iF~~   50 (122)
T pfam02457         2 REAVEGLSKRKTGALIVIERETGLEEY---I----DT--GVL-------IDAEVS---------------SELLKEIFYP   50 (122)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCHHHH---H----HC--CEE-------EEEEEC---------------HHHHHHHCCC
T ss_conf             799999986083369999668877999---7----18--879-------938987---------------9999985679


Q ss_pred             HHHCCCCEEEEEECCC
Q ss_conf             7516661699997698
Q gi|254780227|r  208 RSATPRSLIIHEVMGR  223 (426)
Q Consensus       208 A~s~~~~~~iVEvMGR  223 (426)
                      -+..|..-++|+= +|
T Consensus        51 ~splhDGAvII~~-~~   65 (122)
T pfam02457        51 NTPLHDGAVIIRG-GR   65 (122)
T ss_pred             CCCCCCEEEEEEC-CC
T ss_conf             9877755999989-93


No 248
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems.  Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2).  MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster.  Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.69  E-value=50  Score=13.20  Aligned_cols=21  Identities=5%  Similarity=-0.091  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             489999999987187431884
Q gi|254780227|r  326 VGSWFADKFANMIKAERSIVQ  346 (426)
Q Consensus       326 i~~~La~~i~~~~~~~~~~~~  346 (426)
                      .+.+++++++++++.--.++.
T Consensus       230 ~~~~~A~~le~~yGiP~~~~~  250 (421)
T cd01976         230 SMNYIARMMEEKYGIPWMEYN  250 (421)
T ss_pred             HHHHHHHHHHHHHCCCEEEEC
T ss_conf             999999999998698969515


No 249
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=22.66  E-value=50  Score=13.20  Aligned_cols=100  Identities=14%  Similarity=0.222  Sum_probs=60.5

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
                      ++|||+||=.     -++|+-|.+.++...+..+|+-+.-=    ..++                    .          
T Consensus       136 ~~IGVITS~t-----gAairDIl~~~~rR~P~~~viv~pt~----VQG~--------------------~----------  176 (440)
T COG1570         136 KKIGVITSPT-----GAALRDILHTLSRRFPSVEVIVYPTL----VQGE--------------------G----------  176 (440)
T ss_pred             CEEEEECCCC-----HHHHHHHHHHHHHHCCCCEEEEEECC----CCCC--------------------C----------
T ss_conf             8689981870-----58999999998753888729998214----4178--------------------7----------


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHH---CCCCCEEE-EECCCCCCCC
Q ss_conf             53011101234567456999999998639-9889994882578999999999985---18996288-5222234772
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSG-VTILHTIGGDDTNTTACDLLRYLKE---KNYNITVV-GLPKTIDNDI  181 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-Id~Li~IGGdgS~~~a~~L~e~~~~---~~~~i~vi-giPKTIDNDi  181 (426)
                                   -...+-++++.+.+.+ +|.||+.=|.||....-.+.|+.--   ....|||| +|-.-.|.-|
T Consensus       177 -------------A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAVGHEtD~tL  240 (440)
T COG1570         177 -------------AAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAVGHETDFTL  240 (440)
T ss_pred             -------------CHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf             -------------0999999999863458998899916863488886158099999998079985840666777528


No 250
>PRK05670 anthranilate synthase component II; Provisional
Probab=22.57  E-value=50  Score=13.19  Aligned_cols=23  Identities=13%  Similarity=0.058  Sum_probs=13.6

Q ss_pred             HHHHHCCCCEEEEECCHHHHHHH
Q ss_conf             99986399889994882578999
Q gi|254780227|r  132 HHLMQSGVTILHTIGGDDTNTTA  154 (426)
Q Consensus       132 ~~l~~~~Id~Li~IGGdgS~~~a  154 (426)
                      +.+.+.+-|++|.-||=|+-..+
T Consensus        37 ~~i~~~~pdgiiLS~GPg~P~~~   59 (192)
T PRK05670         37 EEIEALAPDAIVLSPGPGTPAEA   59 (192)
T ss_pred             HHHHHCCCCEEEECCCCCCHHHC
T ss_conf             99985098989999999993660


No 251
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=22.53  E-value=50  Score=13.18  Aligned_cols=47  Identities=23%  Similarity=0.381  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHHHHHCCCC-CEEEEE-CCCCCC
Q ss_conf             999999998639988999-48825789999999999851899-628852-222347
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHT-IGGDDTNTTACDLLRYLKEKNYN-ITVVGL-PKTIDN  179 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~-IGGdgS~~~a~~L~e~~~~~~~~-i~vigi-PKTIDN  179 (426)
                      +|.+.+.+++-+.+++|+ .||    +++..||..+.+.  + ++|+|= |.+||.
T Consensus       637 ~E~Vm~I~e~E~~~GVIVq~GG----Qtp~nlA~~L~~~--GG~~iLGTS~~~ID~  686 (1089)
T TIGR01369       637 FEDVMNIIELEKPEGVIVQFGG----QTPLNLAKELEEA--GGVPILGTSPESIDR  686 (1089)
T ss_pred             CCCCEEHEEECCCCEEEEECCC----HHHHHHHHHHHHC--CCCEEECCCHHHHHH
T ss_conf             0310011000586679997487----3267899999970--893173688578751


No 252
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=22.30  E-value=50  Score=13.15  Aligned_cols=29  Identities=21%  Similarity=0.234  Sum_probs=14.9

Q ss_pred             HHHHCCHHHCCCCCCEEEEEEEECCCCCHH
Q ss_conf             987332121034876337999836877514
Q gi|254780227|r   14 WILTGVLSFLEKDMVAHKVAFLTAGGIAPC   43 (426)
Q Consensus        14 ~~~~g~~~~~~~~~~~krI~IltsGG~aPG   43 (426)
                      |.|+-....-+|+--++-|+.+|+|| |||
T Consensus        13 CfKA~ne~~g~Fe~yv~viaf~tCGg-CpG   41 (101)
T COG5561          13 CFKAANEGEGKFEEYVRVIAFITCGG-CPG   41 (101)
T ss_pred             HHHHHHCCCCCCCCCEEEEEEEECCC-CCC
T ss_conf             88887515653300077899997379-986


No 253
>PTZ00063 histone deacetylase; Provisional
Probab=22.22  E-value=51  Score=13.14  Aligned_cols=21  Identities=14%  Similarity=-0.019  Sum_probs=10.8

Q ss_pred             HHHHHCCCCEEEEECCHHHHH
Q ss_conf             999863998899948825789
Q gi|254780227|r  132 HHLMQSGVTILHTIGGDDTNT  152 (426)
Q Consensus       132 ~~l~~~~Id~Li~IGGdgS~~  152 (426)
                      ..++.+.=+++|+=.|-||+.
T Consensus       245 ~v~~~f~P~~IVlQcGaDsl~  265 (439)
T PTZ00063        245 KCVEVYRPGAIVLQCGADSLT  265 (439)
T ss_pred             HHHHHHCCCEEEEECCCCCCC
T ss_conf             999986999799946765446


No 254
>pfam10479 FSA_C Fragile site-associated protein C-terminus. This is the conserved C-terminal half of the protein KIAA1109 which is the fragile site-associated protein FSA. Genome-wide-association studies showed this protein to linked to the susceptibility to coeliac disease. The protein may also be associated with polycystic kidney disease.
Probab=22.21  E-value=51  Score=13.14  Aligned_cols=42  Identities=12%  Similarity=0.122  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             4899999999871874318841886123558986799999999
Q gi|254780227|r  326 VGSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKM  368 (426)
Q Consensus       326 i~~~La~~i~~~~~~~~~~~~~lGy~qRgg~Ps~~Dr~~a~~l  368 (426)
                      ++.+--+.+-++++....|.++|=++|||.. .+.|..+|..+
T Consensus       568 ieP~gvDyILqKLGF~hARtTIPKwlQRG~m-DPLDkvlA~l~  609 (615)
T pfam10479       568 IEPYGVDYILNKLGFSHARTTIPKWLQRGVM-DPLDKVLAASV  609 (615)
T ss_pred             CCCCCHHHHHHHHCCCCCCCCCHHHHHCCCC-CHHHHHHHHHH
T ss_conf             6886188998864755000346288871377-87899999999


No 255
>pfam06792 UPF0261 Uncharacterized protein family (UPF0261).
Probab=21.66  E-value=52  Score=13.07  Aligned_cols=97  Identities=12%  Similarity=0.121  Sum_probs=47.1

Q ss_pred             CCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHH-HHHCC
Q ss_conf             99789998383660107991304626988887464078740033678886530111012345674569999999-98639
Q gi|254780227|r   60 PKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHH-LMQSG  138 (426)
Q Consensus        60 ~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~  138 (426)
                      .|.+++-+.-|..|--..    -.+.+.++|..   .+|+-+..-|..-.+- +..+    . -..-..+.+.. +++-+
T Consensus        27 ~G~~v~~iDvg~~g~p~~----~~dis~~~Va~---~~g~~~~~~~~~~drg-~a~~----~-M~~ga~~~v~~l~~~g~   93 (403)
T pfam06792        27 QGLEVLVIDVSVLGPPSF----PVDISAEEVAE---AAGSSIEAVIAGGDRG-EAMA----A-MARGAAALVSELYDEGK   93 (403)
T ss_pred             CCCCEEEEECCCCCCCCC----CCCCCHHHHHH---HCCCCHHHHHCCCCHH-HHHH----H-HHHHHHHHHHHHHHCCC
T ss_conf             799589998158889989----99869899998---6599878974588789-9999----9-99999999998886588


Q ss_pred             CCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             988999488257899999999998518996288522223
Q gi|254780227|r  139 VTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI  177 (426)
Q Consensus       139 Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI  177 (426)
                      |++++.+||-+--.-+....+       .+| +|+||=|
T Consensus        94 i~Gvi~lGGs~GT~lat~aMr-------~LP-iG~PK~m  124 (403)
T pfam06792        94 IAGVIGLGGSGGTALATPAMR-------ALP-IGVPKLM  124 (403)
T ss_pred             EEEEEEECCCCHHHHHHHHHH-------HCC-CCCCEEE
T ss_conf             008998347741799999998-------566-6787167


No 256
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=21.60  E-value=52  Score=13.06  Aligned_cols=106  Identities=14%  Similarity=0.127  Sum_probs=66.2

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             33799983687751489999999999998569978999838366010799130462698888746407874003367888
Q gi|254780227|r   29 AHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKL  108 (426)
Q Consensus        29 ~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~  108 (426)
                      .|||.|...|--      ++| ++++++.+  |.+.+.++-=-      +   -....+...+.....|+.   +..   
T Consensus         1 i~kvLIanrGei------A~r-i~rt~re~--gi~~v~i~s~~------d---~~s~~~~~ad~~~~~~~~---~~~---   56 (109)
T pfam00289         1 IKKVLVANRGEI------AVR-IIRALREL--GIETVAVNSNP------D---TVSTHVRLADEAYFLGPG---PAS---   56 (109)
T ss_pred             CCEEEEECCCHH------HHH-HHHHHHHC--CCCEEEEECHH------H---CCCHHHHHHHHHHHCCCC---CCC---
T ss_conf             948999888799------999-99999986--99799996334------4---152256650576534799---832---


Q ss_pred             CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             6530111012345674569999999986399889994882578999999999985189962885222
Q gi|254780227|r  109 TNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPK  175 (426)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPK  175 (426)
                                   +..-+.+.+++..++.++|+  +-+|-|-++-...|++.+.+.  ++..||-|.
T Consensus        57 -------------~~Yl~~~~Ii~ia~~~~~~a--ihpGyGflsEn~~fa~~~~~~--Gi~fiGPs~  106 (109)
T pfam00289        57 -------------ESYLNIERILDIAEKEGADA--IHPGYGFLSENAEFAEACEKA--GITFIGPSP  106 (109)
T ss_pred             -------------CCCCCHHHHHHHHHHHCCCE--EECCCCCCCCCHHHHHHHHHC--CCEEECCCH
T ss_conf             -------------11137999999999818896--877976233599999999988--898999583


No 257
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280   This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=21.60  E-value=52  Score=13.06  Aligned_cols=70  Identities=19%  Similarity=-0.007  Sum_probs=46.1

Q ss_pred             CCCEEEEECC-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-------CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9988999488-25789999999999851899628852222347722-------2114633565999999999999987
Q gi|254780227|r  138 GVTILHTIGG-DDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDII-------PIHQSLGALTAAQVSACFFDNISNE  207 (426)
Q Consensus       138 ~Id~Li~IGG-dgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~-------~td~tiGfdTA~~~~a~~i~~l~~~  207 (426)
                      .|-+|++||- |=|..+|++|-...--...-==.+..|+||+|=+.       ..+..|=|..++....+-+|.|...
T Consensus       393 ~~pGLFa~GEc~fs~HGANRLGAnsLl~a~~dG~~~lP~ti~~~~~~~~~~~~~~~~~P~~~~~~~~~~~r~d~L~~~  470 (620)
T TIGR01811       393 TVPGLFAAGECDFSDHGANRLGANSLLSALADGYFVLPATIENYLGLELSSEDLDEDAPEFEEALAEEQDRLDRLLKM  470 (620)
T ss_pred             CCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             887513530167122453155699998863497576302577553024577767644408999999899888888615


No 258
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=21.54  E-value=52  Score=13.05  Aligned_cols=37  Identities=16%  Similarity=0.171  Sum_probs=19.7

Q ss_pred             CEEEEECCHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             88999488257899-9999999985189962885222234772
Q gi|254780227|r  140 TILHTIGGDDTNTT-ACDLLRYLKEKNYNITVVGLPKTIDNDI  181 (426)
Q Consensus       140 d~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~vigiPKTIDNDi  181 (426)
                      .-.+++=|||++.. ...|.... .+  +++++.|  =++|.-
T Consensus        69 ~~Vv~i~GDG~f~m~~~El~Ta~-r~--~l~vi~v--V~NN~~  106 (183)
T cd02005          69 RRVILLVGDGSFQMTVQELSTMI-RY--GLNPIIF--LINNDG  106 (183)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHH-HH--CCCEEEE--EEECCC
T ss_conf             84799956736762088999999-82--9981999--998994


No 259
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=21.25  E-value=53  Score=13.01  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=14.5

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             3379998368775148999999999
Q gi|254780227|r   29 AHKVAFLTAGGIAPCLSSIIGMLIN   53 (426)
Q Consensus        29 ~krI~IltsGG~aPG~N~~I~~iv~   53 (426)
                      ++||.|+=|||=   =||..|.+.+
T Consensus         2 ~MkVLViGsGGR---EHAla~kl~~   23 (435)
T PRK06395          2 TMKVMLVGSGGR---EDAIARAIKR   23 (435)
T ss_pred             CCEEEEECCCHH---HHHHHHHHHC
T ss_conf             877999887889---9999999855


No 260
>pfam03159 XRN_N XRN 5'-3' exonuclease N-terminus. This family aligns residues towards the N-terminus of several proteins with multiple functions. The members of this family all appear to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, the aligned region may be necessary for 5'-3' exonuclease function. The family also contains several Xrn1 and Xrn2 proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p function in the degradation and processing of several classes of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme catalysing cytoplasmic mRNA degradation in multiple decay pathways, whereas Xrn2p/Rat1p functions in the processing of rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus.
Probab=21.14  E-value=53  Score=13.00  Aligned_cols=18  Identities=17%  Similarity=-0.042  Sum_probs=8.5

Q ss_pred             CCCEEEEECCHHHHHHHH
Q ss_conf             998899948825789999
Q gi|254780227|r  138 GVTILHTIGGDDTNTTAC  155 (426)
Q Consensus       138 ~Id~Li~IGGdgS~~~a~  155 (426)
                      +=.-+++|.=||-.--|.
T Consensus        74 ~P~kllyiaiDGVaP~AK   91 (236)
T pfam03159        74 RPRKLLYMAIDGVAPRAK   91 (236)
T ss_pred             CCCEEEEEEECCCCCHHH
T ss_conf             855259998506787488


No 261
>KOG2636 consensus
Probab=21.08  E-value=53  Score=13.02  Aligned_cols=29  Identities=10%  Similarity=0.045  Sum_probs=15.5

Q ss_pred             EEECCC-CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             884188-6123558986799999999999999
Q gi|254780227|r  344 IVQKSG-YFARSAPSGSEDLSLIKKMVVLAVD  374 (426)
Q Consensus       344 ~~~~lG-y~qRgg~Ps~~Dr~~a~~lG~~Av~  374 (426)
                      +|-+.| |.-+|  |-+|||-++..=-.+-++
T Consensus       403 ~CEICGNy~Y~G--rkaF~RHF~EwRH~hGmr  432 (497)
T KOG2636         403 NCEICGNYVYKG--RKAFDRHFNEWRHAHGMR  432 (497)
T ss_pred             CEEECCCCCCCC--CHHHHHHHHHHHHHHCCE
T ss_conf             013346743448--278998757888761464


No 262
>CHL00085 ycf24 putative ABC transporter
Probab=21.06  E-value=36  Score=14.08  Aligned_cols=124  Identities=9%  Similarity=-0.020  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHCCCCE-----EEEECC---HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             999999998639988-----999488---257899999999998518996288522223477222114633565999999
Q gi|254780227|r  127 LEVSAHHLMQSGVTI-----LHTIGG---DDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSA  198 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~-----Li~IGG---dgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a  198 (426)
                      -+.+.++++++||--     |--.+=   .+|-.-...+.+.++++                  |+=+ ..+++|++..-
T Consensus       106 p~eik~tfekLGip~~e~k~l~gv~vda~~dS~~V~~~~~~~L~~~------------------GVIf-~~~~~A~~~~p  166 (485)
T CHL00085        106 DPELLSTFEKLGIPLNEQKRLSNVAVDAVFDSVSIGTTFKEELIKA------------------GVIF-CSISEAINKYP  166 (485)
T ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCEEEEECHHHHHHHC------------------CEEE-ECHHHHHHHHH
T ss_conf             9999999987188356666642001200205055320127899979------------------9599-56899998708


Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf             999999987751666169999769874289999874014332310111111100014576523287865598999999--
Q gi|254780227|r  199 CFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIER--  276 (426)
Q Consensus       199 ~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~--  276 (426)
                      +.+..-.-++....           .--+.||++|+-++-..                    +|+|...--..++...  
T Consensus       167 elv~ky~g~~v~~~-----------d~kfaALn~A~~sgG~F--------------------vYVPkgV~v~~Pl~~~f~  215 (485)
T CHL00085        167 ELIKKYLGSVVPIG-----------DNYFAALNSAVFSDGSF--------------------CYIPKDTKCPLELSTYFR  215 (485)
T ss_pred             HHHHHHHHCCCCCC-----------CCHHHHHHHHHHCCCEE--------------------EEECCCCCCCCCEEEEEE
T ss_conf             99999861543887-----------44689999998459769--------------------984077111552079999


Q ss_pred             HHH-HHHCCCCEEEEEECCCCCCCC
Q ss_conf             999-850289538995042111111
Q gi|254780227|r  277 LSK-VMEKKGSVAIFVSEGACRDVI  300 (426)
Q Consensus       277 i~~-~~~~~~~~vIVvsEG~~~~~~  300 (426)
                      +.. ....-.+.+||+-||+....+
T Consensus       216 i~~~~~~qf~htLIIaeegS~v~~i  240 (485)
T CHL00085        216 INNEESGQFERTLIIADENSYVSYL  240 (485)
T ss_pred             ECCCCCCCCCEEEEEECCCCEEEEE
T ss_conf             7577567774479996579779998


No 263
>PRK09224 threonine dehydratase; Reviewed
Probab=20.97  E-value=54  Score=12.98  Aligned_cols=139  Identities=14%  Similarity=0.089  Sum_probs=70.5

Q ss_pred             HHHHHHHHC--CCCEE-EEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC------------CCCC--------
Q ss_conf             999999863--99889-994882578999999999985189962885222234772------------2211--------
Q gi|254780227|r  129 VSAHHLMQS--GVTIL-HTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI------------IPIH--------  185 (426)
Q Consensus       129 ~~~~~l~~~--~Id~L-i~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi------------~~td--------  185 (426)
                      ...+-+++.  .+|++ +.+||.|-..+...   +++..+.+++||||---=.+.+            +-++        
T Consensus       158 iglEIleQ~~~~~D~V~vpVGGGGLiaGia~---~~K~~~P~ikVIGVEpe~a~~m~~Sl~aG~~v~l~~v~~fADG~AV  234 (504)
T PRK09224        158 IAMEILQQHPHPLDAIFVPVGGGGLIAGVAA---YIKQLRPEIKVIGVEPEDSACLKAALEAGERVELPQVGLFADGVAV  234 (504)
T ss_pred             HHHHHHHHCCCCCCEEEEECCCCHHHHHHHH---HHHHHCCCCEEEEEEECCCHHHHHHHHCCCEEECCCCCCCCCCCCC
T ss_conf             9999998576888889995584378899999---9986399873899995687579999976975654766743576200


Q ss_pred             CCCCHHHH---H-----------HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH----------------HH
Q ss_conf             46335659---9-----------999999999998775166616999976987428999987----------------40
Q gi|254780227|r  186 QSLGALTA---A-----------QVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSA----------------HC  235 (426)
Q Consensus       186 ~tiGfdTA---~-----------~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~a----------------la  235 (426)
                      ..+|-.|=   -           ..++.+|..+..+     .|+ |+|    -+|=|++++-                +.
T Consensus       235 ~~vG~~tF~i~k~~VDdvv~V~~deIcaAikdi~e~-----~r~-I~E----PaGAlalAglk~y~~~~~~~~~~~v~i~  304 (504)
T PRK09224        235 KRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFED-----TRS-IAE----PAGALALAGLKKYVAQHGIKGETLVAIL  304 (504)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHH-----CCE-EEC----CHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             667678998875248962798878999999999983-----676-534----6189999999999975576646279972


Q ss_pred             CCCCCCCHHHHHHHHHHC---CCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             143323101111111000---145765232878655989999999998
Q gi|254780227|r  236 YLNMIQDRNYIDGFIFSP---DFKGIDGVYLPEMSFNLEVEIERLSKV  280 (426)
Q Consensus       236 ~ga~~~~i~~~~~~~~~~---~~~~~d~iliPE~~~~~~~~~~~i~~~  280 (426)
                      ||||+-+-..-....+..   .....-.+-|||.|=++..|++.+..+
T Consensus       305 sGaN~nF~rLr~v~era~~Ge~re~~~~v~ipe~~Gsf~~f~~~~~~r  352 (504)
T PRK09224        305 SGANMNFDRLRYVAERAELGEQREALLAVTIPEEPGSFLKFCELLGGR  352 (504)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             367667124478898864054424899996589997799999996576


No 264
>PRK00074 guaA GMP synthase; Reviewed
Probab=20.95  E-value=21  Score=15.61  Aligned_cols=43  Identities=12%  Similarity=0.026  Sum_probs=27.0

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCC
Q ss_conf             999836877514899999999999985699789998383660107
Q gi|254780227|r   32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLL   76 (426)
Q Consensus        32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~   76 (426)
                      -||+.||||....+.-.-.+-...  ++-+.-++|+.+|.+-+.+
T Consensus        49 kgIILSGGP~SV~~~~aP~~d~~i--f~l~IPILGICYG~Qlia~   91 (513)
T PRK00074         49 KGIILSGGPASVYEEGAPRADPEI--FELGVPVLGICYGMQLMAH   91 (513)
T ss_pred             CEEEECCCCCCCCCCCCCCCCHHH--HHCCCCEEEECHHHHHHHH
T ss_conf             789988999636899998899899--8269986997588999999


No 265
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=20.91  E-value=54  Score=12.97  Aligned_cols=55  Identities=15%  Similarity=0.230  Sum_probs=38.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             1234567456999999998639988999488257899999999998518996288522
Q gi|254780227|r  117 RGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLP  174 (426)
Q Consensus       117 ~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiP  174 (426)
                      .-....+.++.+++.+.+...+....++|||.   -.+..+++.+...+..+.+|-.-
T Consensus       115 ~V~~lr~~~Da~~i~~~l~~~~~k~vvViGgG---~IGlE~A~~l~~~G~~Vtvve~~  169 (427)
T TIGR03385       115 ITFTLRNLEDTDAIKQYIDANKVDRVVIIGGG---YIGLEMVEALRERGKNVTLIHRS  169 (427)
T ss_pred             CEEEECCHHHHHHHHHHHHCCCCCEEEEECCC---HHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             88997999999999998750799889999963---99999999999769989999846


No 266
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=20.88  E-value=54  Score=12.97  Aligned_cols=113  Identities=19%  Similarity=0.158  Sum_probs=57.7

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r   27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV  106 (426)
Q Consensus        27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~  106 (426)
                      |+.+||.|..|||.    -+++.+..   .. ..|++|+|+.      +++         |.+      .++   +.|- 
T Consensus         1 ~~~~kV~v~mSGGV----DSSVaA~l---Lk-~QGyeViGl~------m~~---------~~~------~~~---~~C~-   47 (356)
T COG0482           1 MKKKKVLVGMSGGV----DSSVAAYL---LK-EQGYEVIGLF------MKN---------WDE------DGG---GGCC-   47 (356)
T ss_pred             CCCCEEEEECCCCH----HHHHHHHH---HH-HCCCEEEEEE------EEE---------ECC------CCC---CCCC-
T ss_conf             98767999905777----89999999---99-7697499999------996---------414------788---8677-


Q ss_pred             CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH-HHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             8865301110123456745699999999863998899948825789999999999-851899628852222347722211
Q gi|254780227|r  107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYL-KEKNYNITVVGLPKTIDNDIIPIH  185 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~-~~~~~~i~vigiPKTIDNDi~~td  185 (426)
                                      .++++.-+...+++++|...++-==   -.-=...-+++ .+.+.+       +|--=|+.. .
T Consensus        48 ----------------s~~d~~da~~va~~LGIp~~~vdf~---~~y~~~V~~~f~~~Y~~G-------~TPNPci~C-N  100 (356)
T COG0482          48 ----------------SEEDLRDAERVADQLGIPLYVVDFE---KEFWNKVFEYFLAEYKAG-------KTPNPCILC-N  100 (356)
T ss_pred             ----------------CHHHHHHHHHHHHHHCCCEEEECHH---HHHHHHHHHHHHHHHHCC-------CCCCCCHHC-C
T ss_conf             ----------------2567899999999809955998468---998888888778998579-------999965104-8


Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             46335659999999
Q gi|254780227|r  186 QSLGALTAAQVSAC  199 (426)
Q Consensus       186 ~tiGfdTA~~~~a~  199 (426)
                      ..+=|..+.+++.+
T Consensus       101 ~~iKF~~~l~~a~~  114 (356)
T COG0482         101 KEIKFKALLDYAKE  114 (356)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             78899999999997


No 267
>pfam07287 DUF1446 Protein of unknown function (DUF1446). This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=20.81  E-value=54  Score=12.96  Aligned_cols=50  Identities=16%  Similarity=0.197  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             56999999998639988999488257899999999998518996288522
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLP  174 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiP  174 (426)
                      +.++.++..+.+++|.-+.--||-....-|.++.+..++.+.+++|-.|-
T Consensus        58 ~~l~~~L~~~~~kgikii~NaGa~NP~~~a~~v~~~a~~~Gl~lkVA~V~  107 (362)
T pfam07287        58 ERLEPVLPLCAEKGIRIVTNAGALNPRGAAEAVRELARELGLDLKVAVVE  107 (362)
T ss_pred             HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             99999999999729389952887897999999999999779995399997


No 268
>PRK12311 rpsB 30S ribosomal protein S2; Provisional
Probab=20.75  E-value=54  Score=12.95  Aligned_cols=77  Identities=10%  Similarity=0.055  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC------CCCCCCCCCCCCCHHHHHHHH
Q ss_conf             699999999863--998899948825789999999999851899628852222------347722211463356599999
Q gi|254780227|r  126 PLEVSAHHLMQS--GVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKT------IDNDIIPIHQSLGALTAAQVS  197 (426)
Q Consensus       126 ~~~~~~~~l~~~--~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT------IDNDi~~td~tiGfdTA~~~~  197 (426)
                      .+++....++..  -=|.++++.-+   .-...+.|.   +..+||||+|--|      ||-=||+.|-++   .|++.+
T Consensus       145 KL~k~lgGIk~M~~lPDlvfViD~~---kE~iAV~EA---~kLgIPvIaIvDTN~dP~~IdYpIPgNDDai---rsI~L~  215 (332)
T PRK12311        145 KLDRSLGGIKDMGGLPDLIFVIDTN---KEDIAIQEA---QRLGIPVAAIVDTNCDPKGITYLVPGNDDAG---RAIALY  215 (332)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCC---CCHHHHHHH---HHCCCCEEEEEECCCCCCCCCCCCCCCCCHH---HHHHHH
T ss_conf             9998546254205599989996897---338999999---9809798999738999865775684865589---999999


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             99999999877516
Q gi|254780227|r  198 ACFFDNISNERSAT  211 (426)
Q Consensus       198 a~~i~~l~~~A~s~  211 (426)
                      +..+.+...+-.+.
T Consensus       216 c~lia~A~l~G~~~  229 (332)
T PRK12311        216 CDLIARAAIDGISR  229 (332)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999987


No 269
>PRK06180 short chain dehydrogenase; Provisional
Probab=20.70  E-value=54  Score=12.94  Aligned_cols=89  Identities=9%  Similarity=0.040  Sum_probs=48.2

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r   27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV  106 (426)
Q Consensus        27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~  106 (426)
                      |+.+|+.++|.++  .|+=.++.   +.+..  .|++|++.-.--+.        +     +.+..  ..++..+.- ..
T Consensus         1 M~~~KvvlITGas--sGIG~aiA---~~l~~--~G~~Vi~~~R~~~~--------l-----~~l~~--~~~~~~~~~-~~   57 (277)
T PRK06180          1 MASMKTWLITGVS--SGFGRALA---QAALA--AGHRVVGTVRSAAA--------R-----RDFEA--LHPGRALAR-VL   57 (277)
T ss_pred             CCCCCEEEECCCC--CHHHHHHH---HHHHH--CCCEEEEEECCHHH--------H-----HHHHH--HCCCCEEEE-EE
T ss_conf             9999889991787--39999999---99998--79999999899999--------9-----99998--679957999-98


Q ss_pred             CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHH
Q ss_conf             8865301110123456745699999999863--99889994882578
Q gi|254780227|r  107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQS--GVTILHTIGGDDTN  151 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~Id~Li~IGGdgS~  151 (426)
                                   +.-+++.++.+++...+.  .||.||-.-|-+..
T Consensus        58 -------------Dvtd~~~v~~~v~~~~~~~G~iDvLVNNAG~~~~   91 (277)
T PRK06180         58 -------------DVTDFDAIDGVVADAEATVGPIDVLVNNAGYGHE   91 (277)
T ss_pred             -------------ECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             -------------3799999999999999981998699989977888


No 270
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=20.60  E-value=55  Score=12.93  Aligned_cols=30  Identities=17%  Similarity=0.200  Sum_probs=21.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             222234445443556648999999998718
Q gi|254780227|r  310 KIKRDSFGHILLDKMNVGSWFADKFANMIK  339 (426)
Q Consensus       310 ~~~~d~~g~~~l~~~~i~~~La~~i~~~~~  339 (426)
                      ..-.+..|+..+.....|..|+-.+--.+.
T Consensus       184 ~~~~~~~g~~~la~aGsGDvLaGii~~lla  213 (254)
T cd01171         184 RVYVNPTGNPGLATGGSGDVLAGIIAALLA  213 (254)
T ss_pred             CEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             889807999878888752789999999998


No 271
>PRK09201 amidase; Provisional
Probab=20.55  E-value=55  Score=12.92  Aligned_cols=12  Identities=17%  Similarity=0.337  Sum_probs=6.6

Q ss_pred             HHHHHHHCCCCC
Q ss_conf             999998448898
Q gi|254780227|r  415 FSDILRHTGQKS  426 (426)
Q Consensus       415 ~~~~l~~~gq~~  426 (426)
                      |....+.+|+|+
T Consensus       406 ~t~~~n~~G~Pa  417 (465)
T PRK09201        406 FTQPISFIGLPV  417 (465)
T ss_pred             HHHHHHHHCCCE
T ss_conf             999999968984


No 272
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=20.51  E-value=55  Score=12.92  Aligned_cols=29  Identities=17%  Similarity=-0.020  Sum_probs=19.0

Q ss_pred             EEEEEE--CCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             799983--68775148999999999999856
Q gi|254780227|r   31 KVAFLT--AGGIAPCLSSIIGMLINHYNKIL   59 (426)
Q Consensus        31 rI~Ilt--sGG~aPG~N~~I~~iv~~a~~~~   59 (426)
                      |||+++  ||..++-.-...+++-.+...+|
T Consensus         1 kIG~~~plSG~~a~~G~~~~~g~~lav~~iN   31 (334)
T cd06342           1 KIGVAGPLTGPNAALGKDIKNGAQLAVEDIN   31 (334)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9678727878515433999999999999998


No 273
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=20.20  E-value=56  Score=12.88  Aligned_cols=90  Identities=13%  Similarity=0.142  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf             9999999986399889994882578999999999985189962-8852222347722211-4633565999999999999
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNIT-VVGLPKTIDNDIIPIH-QSLGALTAAQVSACFFDNI  204 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~-vigiPKTIDNDi~~td-~tiGfdTA~~~~a~~i~~l  204 (426)
                      -...++.+.+..+|++|+.+..-+-.....+.   +    .++ +|.    +|...++.+ .|+++|-. .-...+++.|
T Consensus       104 e~~~~~~l~~~~vdg~Ii~~~~~~~~~~~~~~---~----~~p~~vl----~~~~~~~~~~~~V~~Dn~-~g~~~a~~~L  171 (346)
T PRK10401        104 ERHAIEVLIRQRCNALIVHSKALSDDELAQFM---D----QIPGMVL----INRIVPGYAHRCVCLDNV-SGARMATRML  171 (346)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH---H----CCCCEEE----ECCCCCCCCCCEEEECHH-HHHHHHHHHH
T ss_conf             99999999864885499946878979999999---6----2996899----888788888988994669-9999999999


Q ss_pred             HHHHHHCCCCEEEEEE-CC------CCCCHHHHH
Q ss_conf             9877516661699997-69------874289999
Q gi|254780227|r  205 SNERSATPRSLIIHEV-MG------RNCGWLTAY  231 (426)
Q Consensus       205 ~~~A~s~~~~~~iVEv-MG------R~aG~LAl~  231 (426)
                      ..  .. |+++.++-- .+      |..||....
T Consensus       172 ~~--~G-hrrI~~i~~~~~~~~~~~R~~G~~~al  202 (346)
T PRK10401        172 LN--NG-HQRIGYLSSSHGIEDDAMRKAGWLSAL  202 (346)
T ss_pred             HH--CC-CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             96--29-982899947988716899999999999


No 274
>PRK13121 consensus
Probab=20.17  E-value=56  Score=12.87  Aligned_cols=149  Identities=15%  Similarity=0.217  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHCCCCEEE--EECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC---CCCC-C-CCCCCCCHHHHHHHHHH
Q ss_conf             99999999863998899--9488257899999999998518996288522223---4772-2-21146335659999999
Q gi|254780227|r  127 LEVSAHHLMQSGVTILH--TIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI---DNDI-I-PIHQSLGALTAAQVSAC  199 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li--~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI---DNDi-~-~td~tiGfdTA~~~~a~  199 (426)
                      +++..+.+++.+=.+|+  +..||.+.....++...+.+.+.++-=+|+|=+=   |.-+ + -.+..+--.+..+.+-+
T Consensus         4 i~~~f~~~k~~~~~ali~y~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~   83 (265)
T PRK13121          4 IQQTFAALAAQGRKALIPFITAGDPDPAKTVELMHALVEGGADVIELGVPFSDPMADGPVIQRASERALAHGVSLRQVLA   83 (265)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             89999999976995589887071899899999999999769999997898899776589999999999977998467799


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999987751666169999769874289999874014332310111111100014576523287865598999999999
Q gi|254780227|r  200 FFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSK  279 (426)
Q Consensus       200 ~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~  279 (426)
                      .+..++...  .+-.+   -+|+=..-....  ++            ..+......-+.|-+++|..|++..   +.+..
T Consensus        84 ~~~~~r~~~--~~~Pi---vlM~Y~N~i~~y--G~------------e~F~~~~~~aGvdGlIipDLP~eE~---~~~~~  141 (265)
T PRK13121         84 MVKEFRETN--QTTPV---VLMGYANPIERM--GY------------DAFAAAARAAGVDGVLVVDYPPEEC---EEFAA  141 (265)
T ss_pred             HHHHHHCCC--CCCCE---EEEEHHHHHHHH--HH------------HHHHHHHHHCCCCEEECCCCCHHHH---HHHHH
T ss_conf             999831037--99998---986214599997--19------------9999999872987343489998999---99999


Q ss_pred             HHHCCCCE-EEEEECCCCC
Q ss_conf             85028953-8995042111
Q gi|254780227|r  280 VMEKKGSV-AIFVSEGACR  297 (426)
Q Consensus       280 ~~~~~~~~-vIVvsEG~~~  297 (426)
                      ..++.+-. +-++|.....
T Consensus       142 ~~~~~gl~~I~lvaPtt~~  160 (265)
T PRK13121        142 KMRAAGIDPIFLLAPTSTD  160 (265)
T ss_pred             HHHHCCCCEEEEECCCCCH
T ss_conf             9986599668995899989


No 275
>PRK13112 consensus
Probab=20.16  E-value=56  Score=12.87  Aligned_cols=149  Identities=16%  Similarity=0.239  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHCCCCEE--EEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC---CCCC-C-CCCCCCCHHHHHHHHHH
Q ss_conf             9999999986399889--99488257899999999998518996288522223---4772-2-21146335659999999
Q gi|254780227|r  127 LEVSAHHLMQSGVTIL--HTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI---DNDI-I-PIHQSLGALTAAQVSAC  199 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~L--i~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI---DNDi-~-~td~tiGfdTA~~~~a~  199 (426)
                      ++...+.+++.+=-+|  ++..||.+......+.+.+.+.+.++-=+|||=+=   |.-+ + -.+..+--.+.++.+-+
T Consensus         5 i~~~F~~~k~~~r~ali~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~~~~~~~   84 (279)
T PRK13112          5 IDTRFAELKAEGRPALVTYFMGGDPDLETSLKIMKALPKAGADIIELGMPFSDPMADGPAIQAAGLRALKAGQTLAKTLY   84 (279)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             99999999976995589886073899789999999998779998997899898666579999999999976996889999


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999987751666169999769874289999874014332310111111100014576523287865598999999999
Q gi|254780227|r  200 FFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSK  279 (426)
Q Consensus       200 ~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~  279 (426)
                      .+.+++..-...  .+   -+||=..-....  +            ...+......-+.|-++||+.|++....+   ..
T Consensus        85 ~~~~ir~~~~~~--Pi---vlM~Y~N~i~~~--G------------~e~F~~~~~~aGvdGvIipDLP~eE~~~~---~~  142 (279)
T PRK13112         85 LAREFRKDDDTT--PI---VLMGYYNPIYIY--G------------VERFLTDAKAAGVDGLIVVDLPPEMDAEL---CI  142 (279)
T ss_pred             HHHHHHCCCCCC--CE---EEEEECHHHHHH--C------------HHHHHHHHHHCCCCEEEECCCCHHHHHHH---HH
T ss_conf             999851348998--87---998512499884--7------------99999999973998798469997888999---99


Q ss_pred             HHHCCCC-EEEEEECCCCC
Q ss_conf             8502895-38995042111
Q gi|254780227|r  280 VMEKKGS-VAIFVSEGACR  297 (426)
Q Consensus       280 ~~~~~~~-~vIVvsEG~~~  297 (426)
                      ..++++- .+-.++.....
T Consensus       143 ~~~~~~i~~I~lvaPtt~~  161 (279)
T PRK13112        143 PAMKAGINFIRLATPTTDD  161 (279)
T ss_pred             HHHHCCCCEEEEECCCCCH
T ss_conf             9985783469982589989


Done!