HHsearch results for GI: 254780227 and protein with PDBid: 3pfn_A
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=93.38 E-value=0.055 Score=30.85 Aligned_cols=132 Identities=16% Similarity=0.121 Sum_probs=72.3
Q ss_pred HCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 10348763379998368775148999999999999856997899983836601079913046269888874640787400
Q gi|254780227|r 22 FLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPI 101 (426)
Q Consensus 22 ~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~L 101 (426)
.|..+-..|+|+|++-=+| |-.-...+.+++.+.. .+.+||--.. +.+...+.. +.....+.. -+
T Consensus 31 ~l~w~~~pk~vlii~K~~d-~~~~~~~~el~~~L~~--~g~~V~ve~~----~~~~~~~~~-~~~~~~~~~-------~~ 95 (365)
T 3pfn_A 31 RLTWNKSPKSVLVIKKMRD-ASLLQPFKELCTHLME--ENMIVYVEKK----VLEDPAIAS-DESFGAVKK-------KF 95 (365)
T ss_dssp BEEESSCCCEEEEEECTTC-GGGHHHHHHHHHHHHH--TSCEEEEEHH----HHHSHHHHH-CSTTHHHHH-------HC
T ss_pred CCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHHHH--CCCEEEECCH----HHHCCCCCC-CCCCCCCCC-------CC
T ss_conf 6357999988999957999-7999999999999987--8998998613----530715433-455553344-------43
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 33678886530111012345674569999999986399889994882578999999999985189962885222234772
Q gi|254780227|r 102 GNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181 (426)
Q Consensus 102 gtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi 181 (426)
.+... +++. + ..++|.+|+||||||+-.|..+.. +..+||+||-.
T Consensus 96 ~~~~~-------------------~~~~----~-~~~~DlvI~lGGDGTlL~a~~~~~-----~~~~PilGIN~------ 140 (365)
T 3pfn_A 96 CTFRE-------------------DYDD----I-SNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFHL------ 140 (365)
T ss_dssp EEECT-------------------TTCC----C-TTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEES------
T ss_pred CCCCC-------------------CHHH----C-CCCCCEEEEECCCHHHHHHHHHHC-----CCCCCEEEEEC------
T ss_conf 31557-------------------9567----5-756688999768199999999851-----78982899837------
Q ss_pred CCCCCCCCHHHH--HHHHHHHHHHHHHH
Q ss_conf 221146335659--99999999999987
Q gi|254780227|r 182 IPIHQSLGALTA--AQVSACFFDNISNE 207 (426)
Q Consensus 182 ~~td~tiGfdTA--~~~~a~~i~~l~~~ 207 (426)
=++||-|. .+.+.+.++++...
T Consensus 141 ----G~LGFLt~~~~~~~~~~l~~i~~g 164 (365)
T 3pfn_A 141 ----GSLGFLTPFSFENFQSQVTQVIEG 164 (365)
T ss_dssp ----SSCTTTCCEESTTHHHHHHHHHHS
T ss_pred ----CCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf ----987527657557699999999829