RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780227|ref|YP_003064640.1|
pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (426 letters)



>gnl|CDD|30554 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
           metabolism].
          Length = 347

 Score =  159 bits (404), Expect = 1e-39
 Identities = 94/358 (26%), Positives = 145/358 (40%), Gaps = 71/358 (19%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
           K+A LT+GG AP ++++I  ++    K     E+     GY GLL  D   I    R++ 
Sbjct: 4   KIAILTSGGDAPGMNAVIRAVVRTAIKE--GLEVFGIYNGYLGLLEGD---IKPLTREDV 58

Query: 91  EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
           + L++ GG+ +G++R       +  K              A +L + G+  L  IGGD +
Sbjct: 59  DDLINRGGTFLGSARFPEFKTEEGRKVA------------AENLKKLGIDALVVIGGDGS 106

Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210
            T A  L          I VVG+PKTIDNDI     ++G  TA + +    DN+ +  S+
Sbjct: 107 YTGAALLAEEGG-----IPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTASS 161

Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270
             R + I EVMGR+ GWL   +                        G D + +PE   +L
Sbjct: 162 HER-IFIVEVMGRHAGWLALAAGLAT--------------------GADIILIPEEPADL 200

Query: 271 EVE-----IERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMN 325
            +E     I+   +   KK ++ I V+EGA  D I +N       I+             
Sbjct: 201 IIEELIAEIKAKREARGKKHAI-IVVAEGAI-DQIGENGAELLAAIEE------------ 246

Query: 326 VGSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383
                    A      R  V   G+  R     + D  L  ++   AVD  + G +G 
Sbjct: 247 -------LLALGDFETRVTVL--GHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKTGY 295


>gnl|CDD|29437 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
           glycolysis, catalyzes the phosphorylation of
           fructose-6-phosphate to fructose-1,6-biphosphate. The
           members belong to PFK family that includes ATP- and
           pyrophosphate (PPi)- dependent phosphofructokinases.
           Some members evolved by gene duplication and thus have a
           large C-terminal/N-terminal extension comprising a
           second PFK domain. Generally, ATP-PFKs are allosteric
           homotetramers, and  PPi-PFKs are dimeric and
           nonallosteric except for plant PPi-PFKs which are
           allosteric heterotetramers..
          Length = 338

 Score =  105 bits (264), Expect = 2e-23
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 45/287 (15%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
           K+  LT+GG AP +++ I  ++   + I    E+     GY GL+  D   +  +   + 
Sbjct: 2   KIGVLTSGGDAPGMNAAIRGVVR--SAIAEGLEVYGIYEGYAGLVEGDIKELDWESVSD- 58

Query: 91  EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
             +++ GG+ IG++R K              + E     +A +L + G+  L  IGGD +
Sbjct: 59  --IINRGGTIIGSARCK------------EFRTEEGRAKAAENLKKHGIDALVVIGGDGS 104

Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210
            T A  L      K     V+GLP TIDNDI     ++G  TA +      D I +  S+
Sbjct: 105 YTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRIRDTASS 164

Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270
             R+ ++ EVMGR+CG +   +             +          G D +++PE     
Sbjct: 165 HQRTFVV-EVMGRHCGDIALEAG------------LAT--------GADIIFIPEEPAAD 203

Query: 271 EVE---IERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKR 313
           E E   ++ + K  E+ K    + V+EGA        +  + + + +
Sbjct: 204 EWEEEMVDVIKKRRERGKRHGIVIVAEGAIDF---IPKPITEKLLAK 247


>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase. 
          Length = 279

 Score = 92.0 bits (229), Expect = 2e-19
 Identities = 74/272 (27%), Positives = 117/272 (43%), Gaps = 48/272 (17%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLIN--HYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQ 88
           K+  LT+GG AP +++ I  ++            E+     GY GL+  +   I +   +
Sbjct: 2   KIGVLTSGGDAPGMNAAIRAVVRSAIAEG----LEVYGIYEGYAGLVAGN---IKQLDWE 54

Query: 89  NAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGD 148
           +   ++  GG+ IG++R     F          ++      +A +L + G+  L  IGGD
Sbjct: 55  SVSDIIQRGGTFIGSARCP--EF----------REREGRLKAAENLKKHGIDALVVIGGD 102

Query: 149 DTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNER 208
            + T A DLL       +    VGLP TIDNDI     ++G  TA        D I +  
Sbjct: 103 GSYTGA-DLLT----SEHGFNCVGLPGTIDNDICGTDYTIGFDTALNTIVEAIDRIRDTA 157

Query: 209 SATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSF 268
           S+  R+ ++ EVMGR+CG L   +             I G        G D +++PE  F
Sbjct: 158 SSHQRTFVV-EVMGRHCGDLALVAG------------IAG--------GADYIFIPEAPF 196

Query: 269 NLEVEIERLSKVMEK-KGSVAIFVSEGACRDV 299
             E    RL +  E+ K    + V+EGA   +
Sbjct: 197 WEEELCNRLKRGRERGKRHNIVIVAEGAIDPI 228


>gnl|CDD|29438 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
           enzyme in glycolysis, catalyzes the phosphorylation of
           fructose-6-phosphate to fructose-1,6-biphosphate. The
           members belong to a subfamily of the PFKA family
           (cd00363) and include bacterial ATP-dependent
           phosphofructokinases. These are allosrterically
           regulated homotetramers; the subunits are of about 320
           amino acids..
          Length = 317

 Score = 81.1 bits (200), Expect = 6e-16
 Identities = 70/269 (26%), Positives = 114/269 (42%), Gaps = 49/269 (18%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLIN--HYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQ 88
           ++  LT+GG AP +++ I  ++       +    E+   R GY GL+  D + +    R 
Sbjct: 2   RIGVLTSGGDAPGMNAAIRGVVRSAIAEGL----EVYGIRDGYAGLIAGDIVPLD---RY 54

Query: 89  NAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGD 148
           +   +++ GG+ +G++R     F          KDE     +   L + G+  L  IGGD
Sbjct: 55  SVSDIINRGGTFLGSAR--FPEF----------KDEEGQAKAIEQLKKHGIDALVVIGGD 102

Query: 149 DTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNER 208
            +   A      L E  +    VGLP TIDNDI     ++G  TA        D I +  
Sbjct: 103 GSYMGA----MRLTEHGFP--CVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIRDTS 156

Query: 209 SATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSF 268
           S+  R  ++ EVMGR+CG +   +             I G        G + + +PE  F
Sbjct: 157 SSHQRISVV-EVMGRHCGDIALAAG------------IAG--------GAEFIVIPEAEF 195

Query: 269 NLEVEIERLSKVMEK-KGSVAIFVSEGAC 296
           + E    R+   +E+ K    + V+EG  
Sbjct: 196 DREEVANRIKAGIERGKKHAIVVVAEGVY 224


>gnl|CDD|29440 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
           enzyme in glycolysis, catalyzes the phosphorylation of
           fructose-6-phosphate to fructose-1,6-biphosphate. The
           members belong to a subfamily of the PFKA family
           (cd00363) and include pyrophosphate-dependent
           phosphofructokinases. These are found in bacteria as
           well as plants. These may be dimeric nonallosteric
           enzymes as in bacteria or allosteric heterotetramers as
           in plants..
          Length = 550

 Score = 71.2 bits (174), Expect = 5e-13
 Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 21/197 (10%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
           K+  + +GG AP   ++I  L ++  +    + L  ++ G  G+L  D I +  +  Q  
Sbjct: 74  KIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPY 133

Query: 91  EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
               + G   I + R K+    D  K+      +  L+             L  IGGDD+
Sbjct: 134 RN--TGGFDMICSGRTKIET-EDQFKQAEETAKKLDLDA------------LVVIGGDDS 178

Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDI----IPIHQSLGALTAAQVSACFFDNISN 206
           NT A  L    + K     V+G+PKTID D+    I    S G  TA ++ +    N+  
Sbjct: 179 NTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIET--SFGFDTATKIYSELIGNVMR 236

Query: 207 ERSATPRSLIIHEVMGR 223
           +  +T +     ++MGR
Sbjct: 237 DARSTGKYWHFVKLMGR 253


>gnl|CDD|29439 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
           enzyme in glycolysis, catalyzes the phosphorylation of
           fructose-6-phosphate to fructose-1,6-biphosphate. The
           members belong to a subfamily of the PFKA family
           (cd00363) and include eukaryotic ATP-dependent
           phosphofructokinases. These have evolved from the
           bacterial PFKs by gene duplication and fusion events and
           exhibit complex allosteric behavior..
          Length = 762

 Score = 68.5 bits (167), Expect = 3e-12
 Identities = 74/303 (24%), Positives = 129/303 (42%), Gaps = 60/303 (19%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
            +A LT+GG A  +++ +  ++     I   A++ +   GY+GL+      I +   ++ 
Sbjct: 5   AIAVLTSGGDAQGMNAAVRAVVR--MGIYVGAKVFFVYEGYEGLV-KGGDYIKQAEWESV 61

Query: 91  EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
              L  GG+ IG++R K   F +  + G ++        +A++L+Q G+T L  IGGD +
Sbjct: 62  SNWLQEGGTIIGSARCK--EFRE--REGRLQ--------AAYNLIQRGITNLCVIGGDGS 109

Query: 151 NTTA-------CDLLRYLKE----------KNYNITVVGLPKTIDNDIIPIHQSLGALTA 193
            T A         LL  L +          K  ++ +VG+  +IDND      ++G  +A
Sbjct: 110 LTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSA 169

Query: 194 AQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSP 253
                   D I+    +  R+ ++ EVMGR+CG+L   S                     
Sbjct: 170 LHRICEVVDAITTTAQSHQRTFVL-EVMGRHCGYLALVSGLA------------------ 210

Query: 254 DFKGIDGVYLPEMSFNLEVE---IERLSKVMEKKGSVAI-FVSEGACRDVIMDNRLSSGE 309
              G D +++PE       E     RLS+   +   + I  V+EGA  D     +  + E
Sbjct: 211 --TGADWIFIPERPPEDGWEDQMCRRLSEHRSRGKRLNIIIVAEGAIDD---QLKPITSE 265

Query: 310 KIK 312
            +K
Sbjct: 266 DVK 268



 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 39/193 (20%)

Query: 94  LSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTT 153
              GGS +G             KR L KKD   LE  A++  + G+  L  +GG +    
Sbjct: 449 TGRGGSELGT------------KRTLPKKD---LETIAYNFQKYGIDGLIIVGGFEAYKG 493

Query: 154 ACDLLRYLKE-KNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATP 212
              L    ++ + + I +V +P T+ N++     SLG+ TA      + D I    S T 
Sbjct: 494 LLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRIKQSASGTK 553

Query: 213 RSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLE- 271
           R + I E MG  CG+L   +                        G D  Y+ E  FN+  
Sbjct: 554 RRVFIVETMGGYCGYLATMTGLA--------------------VGADAAYVFEEPFNIRD 593

Query: 272 --VEIERLSKVME 282
               +E L++ M+
Sbjct: 594 LQENVEHLTEKMK 606


>gnl|CDD|37651 KOG2440, KOG2440, KOG2440, Pyrophosphate-dependent
           phosphofructo-1-kinase [Carbohydrate transport and
           metabolism].
          Length = 666

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 57/279 (20%)

Query: 35  LTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLL 94
           LT+GG +  +++ +  ++        K  LIY   GY+GL+     +I E        +L
Sbjct: 2   LTSGGDSQGMNAAVRAVVRMGIYRGCKVYLIYE--GYEGLV-RGGDSIKEAQWLRVSYIL 58

Query: 95  SYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTA 154
           S GG+ IG +R K     +                 A +L+  G+  L  IGGD + T A
Sbjct: 59  SLGGTLIGTARCKAFRGREGRLAA------------ADNLIARGIPNLVVIGGDGSLTGA 106

Query: 155 CDLLR----YLKE--------------KNYNITVVGLPKTIDNDIIPIHQSLGALTAAQV 196
                    YL+E                 ++ +VG+  +IDND+     ++G  +A   
Sbjct: 107 -RAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHR 165

Query: 197 SACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFK 256
            A   D I++   +  R  +  EVMGR+CG+L        +  I                
Sbjct: 166 EA--IDAITSTAQSHSRGFVA-EVMGRHCGYLA------LVAAIA--------------G 202

Query: 257 GIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGA 295
           G D +++PE       ++  +   + K+G   + V  GA
Sbjct: 203 GADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGA 241



 Score = 51.1 bits (122), Expect = 7e-07
 Identities = 45/219 (20%), Positives = 84/219 (38%), Gaps = 27/219 (12%)

Query: 129 VSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI--IPIHQ 186
           + +      G+ I+  IGG   NT A  +   +KE+   + VVG+PKTI  D+    +  
Sbjct: 224 LDSIRKR--GLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLVVGVPKTILGDVQRGGVPS 281

Query: 187 SLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYI 246
           +   +TA ++     +    E  +      I  +MGR    +T  +        +D+++ 
Sbjct: 282 AFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEAT----LASRDKDFC 337

Query: 247 DG--------FIFSPDFKGIDGVYLPE--MSFNLE-----VEIERLSKVMEKKGSVAIFV 291
                      +    +K +D V        F  E           +  +   G   +  
Sbjct: 338 LAPELRGRKFTLNLNTYKILDVVDPRAEQDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRY 397

Query: 292 SEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWF 330
           +EGA +DVI  +    G  + +D+ G ++    +VG W 
Sbjct: 398 AEGAGQDVIAISNGFEG--LAKDALGELIW--KDVGLWL 432



 Score = 36.1 bits (83), Expect = 0.019
 Identities = 32/135 (23%), Positives = 47/135 (34%), Gaps = 24/135 (17%)

Query: 165 NYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRN 224
            ++I +V +P T  N++     SLG  TA    A   D+       T R + + E MG  
Sbjct: 490 GFDIPMVNIPATYSNNVPGTEFSLGVDTALNAWARVCDSTKQSAFGTKRRVFVVETMGGY 549

Query: 225 CGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFN---LEVEIERL-SKV 280
            G+L                       +    G D  Y+PE  F+   L    E L  K+
Sbjct: 550 SGYLA--------------------TMTGLAPGADAAYVPEEGFSIKDLRENAEHLAEKM 589

Query: 281 MEKKGSVAIFVSEGA 295
                      +EGA
Sbjct: 590 RYGNPRGLQLRNEGA 604


>gnl|CDD|30381 COG0031, CysK, Cysteine synthase [Amino acid transport and
           metabolism].
          Length = 300

 Score = 33.2 bits (76), Expect = 0.14
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 31/119 (26%)

Query: 79  KITITEDMRQNAEQLL-SYGGSPIGNSRVKLTNFSDCIKRGLIKKD-------------- 123
            I + E M Q   +LL + G        V LT  +    +G I++               
Sbjct: 89  IIVMPETMSQERRKLLRALGA------EVILTPGAPGNMKGAIERAKELAAEIPGYAVWL 142

Query: 124 ---ENPLEVSAHH-------LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG 172
              ENP    AH+         Q+   +   + G  T  T   + RYLKE+N N+ +V 
Sbjct: 143 NQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVA 201


>gnl|CDD|33760 COG3980, spsG, Spore coat polysaccharide biosynthesis protein,
           predicted glycosyltransferase [Cell envelope biogenesis,
           outer membrane].
          Length = 318

 Score = 29.5 bits (66), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 141 ILHTIGGDDTNTTACDLLRYLKEKNYNITVV 171
           IL T+GG D       +L  L++KN N+ +V
Sbjct: 161 ILITLGGSDPKNLTLKVLAELEQKNVNLHIV 191


>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
           beta-synthase (CBS) and Cysteine synthase. CBS is a
           unique heme-containing enzyme that catalyzes a pyridoxal
           5'-phosphate (PLP)-dependent condensation of serine and
           homocysteine to give cystathionine. Deficiency of CBS
           leads to homocystinuria, an inherited disease of sulfur
           metabolism characterized by increased levels of the
           toxic metabolite homocysteine. Cysteine synthase on the
           other hand catalyzes the last step of cysteine
           biosynthesis.  This subgroup also includes an
           O-Phosphoserine sulfhydrylase found in hyperthermophilic
           archaea which produces L-cysteine from sulfide and the
           more thermostable O-phospho-L-serine..
          Length = 291

 Score = 28.2 bits (64), Expect = 3.9
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 124 ENPLEVSAHH-------LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG 172
           ENP    AH+         Q    +   + G  T  T   + RYLKEKN N+ +VG
Sbjct: 137 ENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVG 192


>gnl|CDD|147763 pfam05788, Orbi_VP1, Orbivirus RNA-dependent RNA polymerase (VP1). 
           This family consists of the RNA-dependent RNA polymerase
           protein VP1 from the Orbiviruses. VP1 may have both
           enzymatic and structural roles in the virus life cycle.
          Length = 1301

 Score = 27.4 bits (61), Expect = 7.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 139 VTILHTIGGDDTNTTACDLLRYLKEKN 165
           V +L + GGDD N+       + +  N
Sbjct: 274 VIVLTSGGGDDRNSKEVFYTGFRRIPN 300


>gnl|CDD|36850 KOG1637, KOG1637, KOG1637, Threonyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 560

 Score = 27.2 bits (60), Expect = 10.0
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 371 LAVDSAISGISGVTGEDER--ENNILRIIKFEDIRGGRVF 408
           LA D+ I+ ++GV  + +R  E + L ++KF+D  G  VF
Sbjct: 30  LADDAVIAKVNGVLWDLDRPLEGDCLELLKFDDDEGKDVF 69


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,095,160
Number of extensions: 271216
Number of successful extensions: 619
Number of sequences better than 10.0: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 21
Length of query: 426
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 330
Effective length of database: 4,189,273
Effective search space: 1382460090
Effective search space used: 1382460090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)