RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780227|ref|YP_003064640.1|
pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus
Liberibacter asiaticus str. psy62]
(426 letters)
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 741 bits (1916), Expect = 0.0
Identities = 239/400 (59%), Positives = 295/400 (73%)
Query: 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDM 86
M KVA LTAGG+APCLSS +G LI Y +I P+ E+I YR GYQGLLL D I IT +
Sbjct: 1 MAVKKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAV 60
Query: 87 RQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIG 146
R NA L YGGSPIGNSRVKLTN +DC+KRGL+K+ ENPL+V+A L GV ILHTIG
Sbjct: 61 RANAGLLHRYGGSPIGNSRVKLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIG 120
Query: 147 GDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN 206
GDDTNTTA DL YL E Y++TVVGLPKTIDND++PI QSLGA TAA+ A FFDN+ N
Sbjct: 121 GDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQGARFFDNVIN 180
Query: 207 ERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEM 266
E SA PR LIIHEVMGRNCGWLTA +A Y + + Y+ GF S + I VYLPEM
Sbjct: 181 EHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEM 240
Query: 267 SFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNV 326
+F+LE E ERL VM++ G+V IF+SEGA D I+ ++GE++KRD+FGH+ LD +N
Sbjct: 241 AFDLEAEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINP 300
Query: 327 GSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGE 386
G+WFA +FA ++ AE+ +VQKSGYFARSAP+ +EDL LIK MV LAV+ A+ G+SGV G
Sbjct: 301 GAWFAKQFAELLGAEKVMVQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSGVIGH 360
Query: 387 DERENNILRIIKFEDIRGGRVFDTNTPWFSDILRHTGQKS 426
DE + LR I+F I+GG+ FDT+TPWF+++L GQ
Sbjct: 361 DEEQGGKLRAIEFPRIKGGKAFDTSTPWFTELLDEIGQPY 400
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 136 bits (344), Expect = 1e-32
Identities = 103/408 (25%), Positives = 182/408 (44%), Gaps = 66/408 (16%)
Query: 31 KVAFLTAGGIAPCLSSIIG----MLINHYNKILPKAELIY-YRFGYQGLLLDDKITITED 85
K +T GG+ P L+ +I LIN+Y + IY ++GY+GL +D I +
Sbjct: 89 KAGIVTCGGLCPGLNVVIRELVMNLINNYG-----VKTIYGAKYGYKGLYKEDWI---KL 140
Query: 86 MRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTI 145
++ + + GG+ +G+SR F +V L++ G+ IL T+
Sbjct: 141 DPKDVKTIHRLGGTILGSSR---GGFD--------------PKVMVDTLIRHGINILFTL 183
Query: 146 GGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS 205
GGD T+ A + + L+ + NI+VVG+PKTIDNDI I +S G TA + +
Sbjct: 184 GGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAY 243
Query: 206 NERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPE 265
E + + I ++MGR+ G++ +++ ++ +PE
Sbjct: 244 VEAKSAKNGVGIVKLMGRDSGFIALHASVA-------------------SADVNVCLIPE 284
Query: 266 MSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMN 325
LE +E + + ++KKG I V+EGA + + D L G D+ G+ L +
Sbjct: 285 FDIPLEGVLEYIEQRLQKKGHCVIVVAEGAGQSL-KDADLDLG----TDASGNKKL--WD 337
Query: 326 VGSWFADKFANMIKAER-SIVQK---SGYFARSAPSGSEDLSLIKKMVVLAVDSAISGIS 381
+G + D+ +K ++ K Y R+ P+ + D ++ AV A++G +
Sbjct: 338 IGVYLKDEITKYLKKKKPEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFT 397
Query: 382 GVT-GEDERENNILRIIKFEDIRGG--RVFDTNTPWFSDILRHTGQKS 426
G G +N +I +++ G R + + +L TGQ S
Sbjct: 398 GFIIG---HVHNNYVMIPIKEMSGNYRRRVNPEGRLWQRMLAITGQPS 442
>gnl|CDD|184488 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 104 bits (262), Expect = 4e-23
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 41/222 (18%)
Query: 145 IGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSAC----- 199
GG+D+ TA + + K+ Y I +G+PKTIDND+ G +AA+ A
Sbjct: 110 NGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYIATSVLEA 169
Query: 200 FFDNISNERSATPRSLI-IHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGI 258
D + S + I EVMGR+ GWL A +A + +N D P
Sbjct: 170 ALDV----AAMANTSKVFILEVMGRHAGWLAAAAA------LAKQNPDDA----PHL--- 212
Query: 259 DGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGH 318
+YLPE F+ E + + ++++ G + VSEG RD D + + + D+FGH
Sbjct: 213 --IYLPERPFDEEKFLADVRAIVKRYGYCVVVVSEG-IRDA--DGKFIAEAGLAEDAFGH 267
Query: 319 ILLDKMNVGSWFADKFANMIKAE-----RSIVQKSGYFARSA 355
L A AN+IK + V Y R+A
Sbjct: 268 AQL------GGVAPVLANLIKEKLGKKVHWAV--LDYLQRAA 301
>gnl|CDD|162879 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal.
Length = 324
Score = 101 bits (255), Expect = 3e-22
Identities = 97/355 (27%), Positives = 162/355 (45%), Gaps = 51/355 (14%)
Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
++ LT GG P L+++I ++ E+I R G++GLL D + + + ++
Sbjct: 1 RIGVLTGGGDCPGLNAVIRGVV-RRAIAEYGWEVIGIRDGWRGLLEGDTVPLLD--LEDV 57
Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
+L GG+ +G+SR TN K +E+ + +L + G+ L IGGD T
Sbjct: 58 RGILPRGGTILGSSR---TN--------PFKYEEDGDDKIVANLKELGLDALIAIGGDGT 106
Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210
A R L +K + VVG+PKTIDND+ + G TA +++ D + +
Sbjct: 107 LGIA----RRLADKG--LPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTAES 160
Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270
R +++ EVMGR+ GW+ +S I G G D + +PE+ F++
Sbjct: 161 HHRVMVV-EVMGRHAGWIALHSG------------IAG--------GADVILIPEIPFDI 199
Query: 271 EVEIERLSKVMEKKGSVAIF-VSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329
+ E++ + + AI V+EGA + + + G K D+FGH+ L +G+W
Sbjct: 200 DSVCEKVRERFARGKRFAIVVVAEGA-KPKGGEMVVQEGVK---DAFGHVRLG--GIGNW 253
Query: 330 FADKFANMIKAE-RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383
A++ E R+ V G+ R + D L + V AVD G G
Sbjct: 254 LAEEIERRTGIETRATVL--GHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGH 306
>gnl|CDD|180716 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 89.2 bits (222), Expect = 2e-18
Identities = 92/346 (26%), Positives = 153/346 (44%), Gaps = 68/346 (19%)
Query: 31 KVAFLTAGGIAPCLSSIIGMLI----NHYNKILPKAELIYYRFGYQGLLLD---DKITIT 83
K A +T GG+ P L+ +I ++ +HY ++ R+GYQGL+ D + +T
Sbjct: 82 KAAIVTCGGLCPGLNDVIRAIVLELHHHYGV----RRILGIRYGYQGLIPRYGHDPVELT 137
Query: 84 EDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILH 143
++ + + GG+ +G+SR G +E V L + + IL
Sbjct: 138 PEVVADIHEF---GGTILGSSR------------GPQDPEE---IVDT--LERMNINILF 177
Query: 144 TIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDN 203
IGGD T A + ++ + I+V+G+PKTIDNDI I +S G TA + +
Sbjct: 178 VIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRC 237
Query: 204 ISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYL 263
E + P + + ++MGR+ G++ AY+A L +D N+ V +
Sbjct: 238 AHVEANGAPNGIGLVKLMGRHSGFIAAYAA---LAS-KDVNF---------------VLI 278
Query: 264 PEMSFNLEVE---IERLSKVMEKKGSVAIFVSEGACRDVIMDNRLS--SGEKIKRDSFGH 318
PE+ F+LE + L K + ++G I V+EGA +++ D + SG D G
Sbjct: 279 PEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDDTGETDASGNPKLGD-IGL 337
Query: 319 ILLDKMNVGSWFADKFANMIKAERSIVQK---SGYFARSAPSGSED 361
L D++ +F I K Y RS P+ + D
Sbjct: 338 FLKDRIK--EYFK-------ARGIPINLKYIDPSYIIRSVPANAND 374
>gnl|CDD|179553 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 82.8 bits (206), Expect = 2e-16
Identities = 73/282 (25%), Positives = 115/282 (40%), Gaps = 75/282 (26%)
Query: 31 KVAFLTAGGIAPCLSSIIGMLIN----------HYNKILPKAELIYYRFGYQGLLLDDKI 80
++ LT+GG AP GM N + E+ GY GLL D +
Sbjct: 3 RIGVLTSGGDAP------GM--NAAIRAVVRTAISEGL----EVYGIYDGYAGLLEGDIV 50
Query: 81 TITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVT 140
+ ++ +++ GG+ +G++R F KDE + +L + G+
Sbjct: 51 KLD---LKSVSDIINRGGTILGSARFP--EF----------KDEEGRAKAIENLKKLGID 95
Query: 141 ILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACF 200
L IGGD + A + L E V+GLP TIDNDI ++G TA +
Sbjct: 96 ALVVIGGDGSYMGA----KRLTEHGIP--VIGLPGTIDNDIAGTDYTIGFDTALNTAVEA 149
Query: 201 FDNI-----SNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDF 255
D + S+ER + I EVMGR+ G L ++ I G
Sbjct: 150 IDRLRDTASSHER------VFIVEVMGRHAGDLALHAG------------IAG------- 184
Query: 256 KGIDGVYLPEMSFNLEVEIERLSKVMEK-KGSVAIFVSEGAC 296
G + + +PE+ F++E ++ K E+ K I V+EG
Sbjct: 185 -GAEVILIPEVPFDIEELCAKIKKGRERGKKHAIIVVAEGVM 225
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 71.0 bits (174), Expect = 6e-13
Identities = 92/404 (22%), Positives = 174/404 (43%), Gaps = 61/404 (15%)
Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
K A +T GG+ P L+ +I ++ K ++ FGY+G + ++ R+
Sbjct: 55 KAAIVTCGGLCPGLNDVIRQIVFTLEIYGVK-NIVGIPFGYRGFF-EKGLSEMPLSRKVV 112
Query: 91 EQLLSYGGSPIGNSR--VKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGD 148
+ + GGS +G SR K ++ D I+ G+ +L +GG+
Sbjct: 113 QNIHLSGGSLLGVSRGGAKTSDIVDSIEA-------------------RGINMLFVLGGN 153
Query: 149 DTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNER 208
T+ A + +++ ++VVG+PKTIDNDI+ + ++ G TA + + ++ E
Sbjct: 154 GTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEA 213
Query: 209 SATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSF 268
+ + + ++MGR+ G++ +++ L Q +D +PE+ F
Sbjct: 214 HSAYHGIGLVKLMGRSSGFIAMHAS---LASGQ----------------VDICLIPEVPF 254
Query: 269 NLEVE---IERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMN 325
L+ + L ++E KGS + V+EGA +D++ + D+ G+ +L +
Sbjct: 255 TLDGPNGVLRHLEHLIETKGSAVVCVAEGAGQDLL-------QKTNATDASGNPVLG--D 305
Query: 326 VGSWFADKFANMIK-----AERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGI 380
+G + K A+ + + Y R+ + + D L + AV A +G
Sbjct: 306 IGVHLQQEIKKHFKDIGVPADVKYIDPT-YMIRACRANASDAILCTVLGQNAVHGAFAGF 364
Query: 381 SGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILRHTGQ 424
SG+T + + I E I R D N+ + L TGQ
Sbjct: 365 SGITVGICNTHYVYLPIP-EVIAYPRRVDPNSRMWHRCLTSTGQ 407
>gnl|CDD|131535 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90).
Length = 301
Score = 70.1 bits (172), Expect = 1e-12
Identities = 74/285 (25%), Positives = 124/285 (43%), Gaps = 52/285 (18%)
Query: 31 KVAFLTAGGIAPCLSSIIGMLINH--YNKILPKAELIYYRFGYQGLLLDDKITITEDMRQ 88
K+ LT+GG AP +++ I ++ Y+ E+ R GY+GL+ + + +
Sbjct: 1 KIGILTSGGDAPGMNAAIRAVVRTAIYHGF----EVYGIRRGYKGLINGEIKPLES---K 53
Query: 89 NAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGD 148
N ++ GG+ +G +R F K E + + +L + G+ L IGGD
Sbjct: 54 NVSGIIHRGGTILGTARCP--EF----------KTEEGRQKAVENLKKLGIEGLVVIGGD 101
Query: 149 DTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNER 208
+ T A + I V+GLP TIDNDI ++G TA D I +
Sbjct: 102 GSYTGA-----QKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTA 156
Query: 209 SATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSF 268
++ R+ +I EVMGR+ G L YS I G + + +PE +
Sbjct: 157 TSHERAFVI-EVMGRHAGDLALYSG------------IAT--------GAEIIIIPEFDY 195
Query: 269 NLEVEIERLSKVMEKKGSVA-IFVSEGACRDVIMDNRLSSGEKIK 312
+++ I+RL + E + I V+EG I+ + +KI+
Sbjct: 196 DIDELIQRLKEQHEAGKKHSIIIVAEGN----IVGSAKEVAKKIE 236
>gnl|CDD|162876 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 745
Score = 69.7 bits (171), Expect = 1e-12
Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 35/222 (15%)
Query: 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQN 89
++ LT+GG A +++ + ++ I + R GYQGL+ D I E ++
Sbjct: 1 KRIGVLTSGGDAQGMNAAVRAVVR--MAIYVGCRVYAIREGYQGLV-DGGDNIEEANWED 57
Query: 90 AEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDD 149
+LS GG+ IG +R K F + + G +K N L++ G+ L IGGD
Sbjct: 58 VRGILSLGGTIIGTARCK--EFRE--RPGRLKAARN--------LIKRGIDNLVVIGGDG 105
Query: 150 TNTTACDLLR-----YLKE-------------KNYNITVVGLPKTIDNDIIPIHQSLGAL 191
+ T A DL R L+E ++ ++T+VGL +IDND+ ++GA
Sbjct: 106 SLTGA-DLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGAD 164
Query: 192 TAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSA 233
+A D IS+ + R+ ++ EVMGR+CG+L +A
Sbjct: 165 SALHRICEAIDAISSTAQSHQRAFVV-EVMGRHCGYLALMAA 205
Score = 53.1 bits (128), Expect = 1e-07
Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 52/222 (23%)
Query: 70 GYQGLLLDDKITITEDMR----QNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDEN 125
G+ GL D+R + E + GGS +G R L KD
Sbjct: 428 GFSGL-------ARGDVRELTWSDVEGWVGEGGSELGT------------NRELPGKD-- 466
Query: 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEK--NYNITVVGLPKTIDNDIIP 183
L + A++ + + L IGG + A L +EK + I +V +P TI N++
Sbjct: 467 -LGMIAYYFQKHKIDGLLIIGGFEA-FEALLQLEQAREKYPAFRIPMVVIPATISNNVPG 524
Query: 184 IHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDR 243
SLG+ TA + DNI SA+ R + + E MG G+L +
Sbjct: 525 TEYSLGSDTALNEITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMA----------- 573
Query: 244 NYIDGFIFSPDFKGIDGVYLPEMSFN---LEVEIERLSKVME 282
G G D Y+PE + L+ +IE L +
Sbjct: 574 ----GLA-----TGADAAYIPEEGISLKDLQEDIEHLKEKFA 606
>gnl|CDD|180830 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 68.8 bits (169), Expect = 2e-12
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 26/195 (13%)
Query: 19 VLSFLEKDMVAH---KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLL 75
++F++ + KV + +GG AP ++I L + K+ P ++L + G GLL
Sbjct: 57 YVTFVKGSESSSKPLKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLL 116
Query: 76 LDDKITITEDMRQNAEQLLSYGG-SPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHL 134
I ITE+ ++ + GG IG+ R K I+ +E E +
Sbjct: 117 NGKYIEITEE---VIDEYRNTGGFDMIGSGRTK------------IETEEQ-KEACLETV 160
Query: 135 MQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTID----NDIIPIHQSLGA 190
+ + L IGGDD+NT A L Y + V+G+PKTID N+ I S G
Sbjct: 161 KKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIET--SFGF 218
Query: 191 LTAAQVSACFFDNIS 205
TA + + NIS
Sbjct: 219 DTATKTYSEMIGNIS 233
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 68.2 bits (167), Expect = 4e-12
Identities = 74/269 (27%), Positives = 121/269 (44%), Gaps = 60/269 (22%)
Query: 138 GVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG-------- 189
G+ ++ IGGD T A + ++ + + V G+PKTIDNDI I +S G
Sbjct: 176 GINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEA 235
Query: 190 --ALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYID 247
A+ AA V A +N + + ++MGR G++ Y+
Sbjct: 236 QRAINAAHVEAESVEN----------GIGLVKLMGRYSGFIAMYAT-------------- 271
Query: 248 GFIFSPDFKGIDGVYLPEMSFNLEVE---IERLSKVMEKKGSVAIFVSEGACRDVIMDNR 304
+ S D +D +PE F LE + E + K +++ G + I V+EGA +D+I ++
Sbjct: 272 --LASRD---VDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVVAEGAGQDLIAESM 326
Query: 305 LSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKSG---------YFARSA 355
SS + D+ G+ LL ++VG W + K IK + V+K Y R+
Sbjct: 327 ESSDLQ---DASGNKLL--LDVGLWLSQK----IKDHFTKVKKMPINLKYIDPTYMIRAI 377
Query: 356 PSGSEDLSLIKKMVVLAVDSAISGISGVT 384
PS + D + AV A++G +G T
Sbjct: 378 PSNASDNVYCTLLAHSAVHGAMAGYTGFT 406
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences.
Length = 539
Score = 67.4 bits (165), Expect = 8e-12
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 25/181 (13%)
Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
K+ + +GG AP ++I L + K+ P ++L + G GLL ++ + +T+++
Sbjct: 69 KIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKEL---- 124
Query: 91 EQLLSY---GG-SPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIG 146
+ +Y GG IG+ R K I+ +E + + + L IG
Sbjct: 125 --IDTYRNTGGFDIIGSGRTK------------IETEEQ-FAKALTTAKKLKLDGLVIIG 169
Query: 147 GDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIP--IHQSLGALTAAQVSACFFDNI 204
GDD+NT A L Y + V+G+PKTID D+ I S G TA ++ + NI
Sbjct: 170 GDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNI 229
Query: 205 S 205
Sbjct: 230 C 230
>gnl|CDD|173508 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 57.7 bits (139), Expect = 6e-09
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 17/196 (8%)
Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
K+ + +GG AP ++I + ++ + ++++I + G GL + +TIT+ +
Sbjct: 179 KIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRF 238
Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
L G + + + R K+ N D I +E L +G+ I IGGD +
Sbjct: 239 RNL--GGFNMLWSGRGKVRNKDDLIA----------IENIVAKLKLNGLVI---IGGDGS 283
Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIP--IHQSLGALTAAQVSACFFDNISNER 208
N+ A + Y E+ I+++G+PKTID D+ I S G TA + + N+ +
Sbjct: 284 NSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDV 343
Query: 209 SATPRSLIIHEVMGRN 224
+ VMGR+
Sbjct: 344 KTGHNVYHVVRVMGRS 359
>gnl|CDD|177893 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 56.7 bits (137), Expect = 1e-08
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 142 LHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI----IPIHQSLGALTAAQVS 197
L IGGDD+NT AC L Y + KN V+G PKTID D+ +P S G TA ++
Sbjct: 194 LVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPT--SFGFDTACKIY 251
Query: 198 ACFFDNISNERSATPRSLIIHEVMGR 223
+ N+ + +T + +MGR
Sbjct: 252 SEMIGNVMIDARSTGKYYHFVRLMGR 277
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 55.5 bits (134), Expect = 3e-08
Identities = 91/350 (26%), Positives = 152/350 (43%), Gaps = 53/350 (15%)
Query: 31 KVAFLTAGGIAPCLSSIIGMLINH----YNKILPKAELIYYRFGYQGLLLDDKITITEDM 86
++ LT+GG L+++I +++ Y E+I R QGL+ I D+
Sbjct: 6 RIGILTSGGDCAGLNAVIRAVVHRARGTYG-----WEVIGIRDATQGLMARPPQYIELDL 60
Query: 87 RQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIG 146
Q + LL GG+ +G + K F+ + G +D + + +H G+ L IG
Sbjct: 61 DQ-VDDLLRMGGTILGTTN-KGDPFAFPMPDG-SLRDRSQEIIDGYH--SLGLDALIGIG 115
Query: 147 GDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN 206
GD + +LR L ++ I +VG+PKTIDND+ S+G TA ++ D +
Sbjct: 116 GDGS----LAILRRLAQQG-GINLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHF 170
Query: 207 ERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEM 266
++ R +I+ EVMGR+ G + A +A I G G D + +PE+
Sbjct: 171 TAASHNRVMIL-EVMGRDAGHI-ALAAG-----------IAG--------GADVILIPEI 209
Query: 267 SFNLEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKR-DSFGHILLDKM 324
+ LE +++ + E+ K + VSE R GE++ + + G
Sbjct: 210 PYTLENVCKKIRERQEEGKNFCLVVVSEAV--------RTEEGEQVTKTQALGEDRYG-- 259
Query: 325 NVGSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVD 374
+G + A++ A AE + V G+ R D L V AVD
Sbjct: 260 GIGQYLAEQIAERTGAE-TRVTVLGHIQRGGIPSPRDRLLASAFGVAAVD 308
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 55.0 bits (132), Expect = 3e-08
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 23/173 (13%)
Query: 29 AHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQ 88
A ++ + +GG A ++I L+++ ++L + G +G+ + +TED
Sbjct: 102 ARRIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDD-- 159
Query: 89 NAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDEN---PLEVSAHHLMQSGVTILHTI 145
+L+ GG I C R I+ +E LE+ L G+ + I
Sbjct: 160 -INGILNQGGFNI-----------ICSGRHKIETEEQMRASLEI-CEKLKLHGLVV---I 203
Query: 146 GGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIP--IHQSLGALTAAQV 196
GGDD+NT A L Y K + + VVG PKTID D+ I S G TA +
Sbjct: 204 GGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKT 256
>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. Alternate name:
O-acetylserine (thiol)-lyase.
Length = 290
Score = 33.3 bits (76), Expect = 0.13
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 136 QSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL 173
Q+G I H + T T + R+LKE+N + +VGL
Sbjct: 159 QTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGL 196
>gnl|CDD|178598 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 32.4 bits (74), Expect = 0.21
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 145 IGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181
IGG +NT A L E VVG+P T++ D+
Sbjct: 180 IGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDL 216
>gnl|CDD|183302 PRK11761, cysM, cysteine synthase B; Provisional.
Length = 296
Score = 29.8 bits (68), Expect = 1.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 159 RYLKEKNYNITVVGL 173
RYLKE+N + +VGL
Sbjct: 186 RYLKEQNPAVQIVGL 200
>gnl|CDD|182753 PRK10814, PRK10814, outer membrane-specific lipoprotein transporter
subunit LolC; Provisional.
Length = 399
Score = 29.3 bits (66), Expect = 1.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 280 VMEKKGSVAIFVSEGACRDVIM 301
VMEK+G VAI ++G R IM
Sbjct: 290 VMEKQGEVAILQTQGLTRRQIM 311
>gnl|CDD|178870 PRK00109, PRK00109, Holliday junction resolvase-like protein;
Reviewed.
Length = 138
Score = 29.0 bits (66), Expect = 2.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 156 DLLRYLKEKNYNITVVGLPKTIDNDI 181
L + +KE + VVGLP +D
Sbjct: 45 RLEKLIKEWQPDGLVVGLPLNMDGTE 70
>gnl|CDD|129361 TIGR00259, thylakoid_BtpA, membrane complex biogenesis protein,
BtpA family. Members of this family are found in C.
elegans, Synechocystis sp., E. coli, and several of the
Archaea. Members in Cyanobacteria have been shown to
play a role in protein complex biogenesis, and
designated BtpA (biogenesis of thylakoid protein).
Homologs in non-photosynthetic species, where thylakoid
intracytoplasmic membranes are lacking, are likely to
act elsewhere in membrane protein biogenesis.
Length = 257
Score = 28.6 bits (64), Expect = 3.5
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 230 AYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK 283
A S N+ + + DG I + K DGV FN V+ R+S+ +EK
Sbjct: 205 AGSGVNLENVEELLSIADGVIVATTIKK-DGV------FNNFVDQARVSQFVEK 251
>gnl|CDD|132370 TIGR03327, AMP_phos, AMP phosphorylase. This enzyme family is
found, so far, strictly in the Archaea, and only in
those with a type III Rubisco enzyme. Most of the
members previously were annotated as thymidine
phosphorylase, or DeoA. The AMP metabolized by this
enzyme may be produced by ADP-dependent sugar kinases.
Length = 500
Score = 28.1 bits (63), Expect = 4.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 75 LLDDKITITEDMRQNAEQLLSYGGSPIG 102
L D I + + + N E ++YGG PIG
Sbjct: 298 LARDFIELGDRLGMNVECAITYGGQPIG 325
>gnl|CDD|149704 pfam08728, CRT10, CRT10. CRT10 is a transcriptional regulator of
ribonucleotide reductase (RNR) genes. RNR catalyses the
rate limiting step in dNTP synthesis. Mutations in CRT10
have been shown to enhance hydroxyurea resistance.
Length = 562
Score = 27.8 bits (62), Expect = 4.9
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 250 IFSPDFKGIDGVYLPEMSFNLEVEIERL 277
P + IDG+ + E S N L
Sbjct: 521 FPYPGIRTIDGLAVRERSANGRKPRYLL 548
>gnl|CDD|149220 pfam08013, Tagatose_6_P_K, Tagatose 6 phosphate kinase. Proteins
in this family are tagatose 6 phosphate kinases.
Length = 424
Score = 27.9 bits (63), Expect = 5.2
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 18/71 (25%)
Query: 167 NITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCG 226
N+T +P + + Q L A + E S P L+I + R
Sbjct: 372 NLTGQPIPLPL------LSQYLPEQYRAVRAG--------ELSPDPEELVIDRI--RQV- 414
Query: 227 WLTAYSAHCYL 237
L Y+A C+L
Sbjct: 415 -LRDYAAACHL 424
>gnl|CDD|162220 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this family
is proposed but not proven.
Length = 454
Score = 27.8 bits (62), Expect = 5.4
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 124 ENPLEVSAHH-------LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG 172
NPL AH+ L Q + + G T T + RYLKE N +VG
Sbjct: 150 SNPL---AHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVG 202
>gnl|CDD|180924 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase;
Validated.
Length = 182
Score = 27.6 bits (62), Expect = 6.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 154 ACDLLRYLKEKNYNITVV 171
A DL L ++ Y +TV+
Sbjct: 17 AADLTSQLTKRGYQVTVL 34
>gnl|CDD|129352 TIGR00250, RNAse_H_YqgF, RNAse H-fold protein YqgF. This protein
family, which exhibits an RNAse H fold in crystal
structure, has been proposed as a putative Holliday
junction resolvase, an alternate to RuvC.
Length = 130
Score = 27.5 bits (61), Expect = 7.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 159 RYLKEKNYNITVVGLPKTIDNDIIP 183
LKE + VVGLP +D P
Sbjct: 42 ELLKEWTPDKIVVGLPLNMDGTEGP 66
>gnl|CDD|162027 TIGR00762, DegV, EDD domain protein, DegV family. This family of
proteins is related to DegV of Bacillus subtilis and
includes paralogous sets in several species (B.
subtilis, Deinococcus radiodurans, Mycoplasma
pneumoniae) that are closer in percent identity to each
than to most homologs from other species. This suggests
both recent paralogy and diversity of function. DegV
itself is encoded immediately downstream of DegU, a
transcriptional regulator of degradation, but is itself
uncharacterized. Crystallography suggested a
lipid-binding site, while comparison of the crystal
structure to dihydroxyacetone kinase and to a mannose
transporter EIIA domain suggests a conserved domain,
EDD, with phosphotransferase activity.
Length = 275
Score = 27.4 bits (62), Expect = 8.1
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 154 ACDLLRYLKEKNYNITVVGLPKTIDN 179
DL L E+ Y ITVV L ID
Sbjct: 8 TADLPPELIEE-YGITVVPLTVIIDG 32
>gnl|CDD|177494 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 27.2 bits (60), Expect = 8.8
Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 203 NISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVY 262
N N TP S + + + N G + + + D +GFI +D +
Sbjct: 294 NSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFI-----DNMDCIT 348
Query: 263 ----LPEMSFNLEVEIERLSKV-MEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFG 317
L ++ E E+ RL+ + + S F+ C + + +L + I
Sbjct: 349 SNKRLNQIKDKCEDELNRLASIKITNTYSFDDFLK---CDNSTLLCKLVNNSIID----- 400
Query: 318 HILLDKMNV 326
IL+D N+
Sbjct: 401 DILIDSFNI 409
>gnl|CDD|166671 PLN03030, PLN03030, cationic peroxidase; Provisional.
Length = 324
Score = 27.2 bits (60), Expect = 9.2
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 145 IGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG----------AL--- 191
+GG TTAC RY + N+ T G +ID +P Q+L AL
Sbjct: 184 VGGHTIGTTACQFFRY-RLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTG 242
Query: 192 TAAQVSACFFDNISNER 208
++ + A FF N+ N R
Sbjct: 243 SSNRFDASFFSNLKNGR 259
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.138 0.402
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,945,797
Number of extensions: 451603
Number of successful extensions: 877
Number of sequences better than 10.0: 1
Number of HSP's gapped: 851
Number of HSP's successfully gapped: 40
Length of query: 426
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 330
Effective length of database: 3,920,105
Effective search space: 1293634650
Effective search space used: 1293634650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)