RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus Liberibacter asiaticus str. psy62] (426 letters) >gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated. Length = 403 Score = 741 bits (1916), Expect = 0.0 Identities = 239/400 (59%), Positives = 295/400 (73%) Query: 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDM 86 M KVA LTAGG+APCLSS +G LI Y +I P+ E+I YR GYQGLLL D I IT + Sbjct: 1 MAVKKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAV 60 Query: 87 RQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIG 146 R NA L YGGSPIGNSRVKLTN +DC+KRGL+K+ ENPL+V+A L GV ILHTIG Sbjct: 61 RANAGLLHRYGGSPIGNSRVKLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIG 120 Query: 147 GDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN 206 GDDTNTTA DL YL E Y++TVVGLPKTIDND++PI QSLGA TAA+ A FFDN+ N Sbjct: 121 GDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQGARFFDNVIN 180 Query: 207 ERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEM 266 E SA PR LIIHEVMGRNCGWLTA +A Y + + Y+ GF S + I VYLPEM Sbjct: 181 EHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEM 240 Query: 267 SFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNV 326 +F+LE E ERL VM++ G+V IF+SEGA D I+ ++GE++KRD+FGH+ LD +N Sbjct: 241 AFDLEAEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINP 300 Query: 327 GSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGE 386 G+WFA +FA ++ AE+ +VQKSGYFARSAP+ +EDL LIK MV LAV+ A+ G+SGV G Sbjct: 301 GAWFAKQFAELLGAEKVMVQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSGVIGH 360 Query: 387 DERENNILRIIKFEDIRGGRVFDTNTPWFSDILRHTGQKS 426 DE + LR I+F I+GG+ FDT+TPWF+++L GQ Sbjct: 361 DEEQGGKLRAIEFPRIKGGKAFDTSTPWFTELLDEIGQPY 400 >gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional. Length = 459 Score = 136 bits (344), Expect = 1e-32 Identities = 103/408 (25%), Positives = 182/408 (44%), Gaps = 66/408 (16%) Query: 31 KVAFLTAGGIAPCLSSIIG----MLINHYNKILPKAELIY-YRFGYQGLLLDDKITITED 85 K +T GG+ P L+ +I LIN+Y + IY ++GY+GL +D I + Sbjct: 89 KAGIVTCGGLCPGLNVVIRELVMNLINNYG-----VKTIYGAKYGYKGLYKEDWI---KL 140 Query: 86 MRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTI 145 ++ + + GG+ +G+SR F +V L++ G+ IL T+ Sbjct: 141 DPKDVKTIHRLGGTILGSSR---GGFD--------------PKVMVDTLIRHGINILFTL 183 Query: 146 GGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS 205 GGD T+ A + + L+ + NI+VVG+PKTIDNDI I +S G TA + + Sbjct: 184 GGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAY 243 Query: 206 NERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPE 265 E + + I ++MGR+ G++ +++ ++ +PE Sbjct: 244 VEAKSAKNGVGIVKLMGRDSGFIALHASVA-------------------SADVNVCLIPE 284 Query: 266 MSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMN 325 LE +E + + ++KKG I V+EGA + + D L G D+ G+ L + Sbjct: 285 FDIPLEGVLEYIEQRLQKKGHCVIVVAEGAGQSL-KDADLDLG----TDASGNKKL--WD 337 Query: 326 VGSWFADKFANMIKAER-SIVQK---SGYFARSAPSGSEDLSLIKKMVVLAVDSAISGIS 381 +G + D+ +K ++ K Y R+ P+ + D ++ AV A++G + Sbjct: 338 IGVYLKDEITKYLKKKKPEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFT 397 Query: 382 GVT-GEDERENNILRIIKFEDIRGG--RVFDTNTPWFSDILRHTGQKS 426 G G +N +I +++ G R + + +L TGQ S Sbjct: 398 GFIIG---HVHNNYVMIPIKEMSGNYRRRVNPEGRLWQRMLAITGQPS 442 >gnl|CDD|184488 PRK14072, PRK14072, 6-phosphofructokinase; Provisional. Length = 416 Score = 104 bits (262), Expect = 4e-23 Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 41/222 (18%) Query: 145 IGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSAC----- 199 GG+D+ TA + + K+ Y I +G+PKTIDND+ G +AA+ A Sbjct: 110 NGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYIATSVLEA 169 Query: 200 FFDNISNERSATPRSLI-IHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGI 258 D + S + I EVMGR+ GWL A +A + +N D P Sbjct: 170 ALDV----AAMANTSKVFILEVMGRHAGWLAAAAA------LAKQNPDDA----PHL--- 212 Query: 259 DGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGH 318 +YLPE F+ E + + ++++ G + VSEG RD D + + + D+FGH Sbjct: 213 --IYLPERPFDEEKFLADVRAIVKRYGYCVVVVSEG-IRDA--DGKFIAEAGLAEDAFGH 267 Query: 319 ILLDKMNVGSWFADKFANMIKAE-----RSIVQKSGYFARSA 355 L A AN+IK + V Y R+A Sbjct: 268 AQL------GGVAPVLANLIKEKLGKKVHWAV--LDYLQRAA 301 >gnl|CDD|162879 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal. Length = 324 Score = 101 bits (255), Expect = 3e-22 Identities = 97/355 (27%), Positives = 162/355 (45%), Gaps = 51/355 (14%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 ++ LT GG P L+++I ++ E+I R G++GLL D + + + ++ Sbjct: 1 RIGVLTGGGDCPGLNAVIRGVV-RRAIAEYGWEVIGIRDGWRGLLEGDTVPLLD--LEDV 57 Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 +L GG+ +G+SR TN K +E+ + +L + G+ L IGGD T Sbjct: 58 RGILPRGGTILGSSR---TN--------PFKYEEDGDDKIVANLKELGLDALIAIGGDGT 106 Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210 A R L +K + VVG+PKTIDND+ + G TA +++ D + + Sbjct: 107 LGIA----RRLADKG--LPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTAES 160 Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270 R +++ EVMGR+ GW+ +S I G G D + +PE+ F++ Sbjct: 161 HHRVMVV-EVMGRHAGWIALHSG------------IAG--------GADVILIPEIPFDI 199 Query: 271 EVEIERLSKVMEKKGSVAIF-VSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329 + E++ + + AI V+EGA + + + G K D+FGH+ L +G+W Sbjct: 200 DSVCEKVRERFARGKRFAIVVVAEGA-KPKGGEMVVQEGVK---DAFGHVRLG--GIGNW 253 Query: 330 FADKFANMIKAE-RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383 A++ E R+ V G+ R + D L + V AVD G G Sbjct: 254 LAEEIERRTGIETRATVL--GHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFGH 306 >gnl|CDD|180716 PRK06830, PRK06830, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional. Length = 443 Score = 89.2 bits (222), Expect = 2e-18 Identities = 92/346 (26%), Positives = 153/346 (44%), Gaps = 68/346 (19%) Query: 31 KVAFLTAGGIAPCLSSIIGMLI----NHYNKILPKAELIYYRFGYQGLLLD---DKITIT 83 K A +T GG+ P L+ +I ++ +HY ++ R+GYQGL+ D + +T Sbjct: 82 KAAIVTCGGLCPGLNDVIRAIVLELHHHYGV----RRILGIRYGYQGLIPRYGHDPVELT 137 Query: 84 EDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILH 143 ++ + + GG+ +G+SR G +E V L + + IL Sbjct: 138 PEVVADIHEF---GGTILGSSR------------GPQDPEE---IVDT--LERMNINILF 177 Query: 144 TIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDN 203 IGGD T A + ++ + I+V+G+PKTIDNDI I +S G TA + + Sbjct: 178 VIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRC 237 Query: 204 ISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYL 263 E + P + + ++MGR+ G++ AY+A L +D N+ V + Sbjct: 238 AHVEANGAPNGIGLVKLMGRHSGFIAAYAA---LAS-KDVNF---------------VLI 278 Query: 264 PEMSFNLEVE---IERLSKVMEKKGSVAIFVSEGACRDVIMDNRLS--SGEKIKRDSFGH 318 PE+ F+LE + L K + ++G I V+EGA +++ D + SG D G Sbjct: 279 PEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDDTGETDASGNPKLGD-IGL 337 Query: 319 ILLDKMNVGSWFADKFANMIKAERSIVQK---SGYFARSAPSGSED 361 L D++ +F I K Y RS P+ + D Sbjct: 338 FLKDRIK--EYFK-------ARGIPINLKYIDPSYIIRSVPANAND 374 >gnl|CDD|179553 PRK03202, PRK03202, 6-phosphofructokinase; Provisional. Length = 320 Score = 82.8 bits (206), Expect = 2e-16 Identities = 73/282 (25%), Positives = 115/282 (40%), Gaps = 75/282 (26%) Query: 31 KVAFLTAGGIAPCLSSIIGMLIN----------HYNKILPKAELIYYRFGYQGLLLDDKI 80 ++ LT+GG AP GM N + E+ GY GLL D + Sbjct: 3 RIGVLTSGGDAP------GM--NAAIRAVVRTAISEGL----EVYGIYDGYAGLLEGDIV 50 Query: 81 TITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVT 140 + ++ +++ GG+ +G++R F KDE + +L + G+ Sbjct: 51 KLD---LKSVSDIINRGGTILGSARFP--EF----------KDEEGRAKAIENLKKLGID 95 Query: 141 ILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACF 200 L IGGD + A + L E V+GLP TIDNDI ++G TA + Sbjct: 96 ALVVIGGDGSYMGA----KRLTEHGIP--VIGLPGTIDNDIAGTDYTIGFDTALNTAVEA 149 Query: 201 FDNI-----SNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDF 255 D + S+ER + I EVMGR+ G L ++ I G Sbjct: 150 IDRLRDTASSHER------VFIVEVMGRHAGDLALHAG------------IAG------- 184 Query: 256 KGIDGVYLPEMSFNLEVEIERLSKVMEK-KGSVAIFVSEGAC 296 G + + +PE+ F++E ++ K E+ K I V+EG Sbjct: 185 -GAEVILIPEVPFDIEELCAKIKKGRERGKKHAIIVVAEGVM 225 >gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase. Length = 411 Score = 71.0 bits (174), Expect = 6e-13 Identities = 92/404 (22%), Positives = 174/404 (43%), Gaps = 61/404 (15%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 K A +T GG+ P L+ +I ++ K ++ FGY+G + ++ R+ Sbjct: 55 KAAIVTCGGLCPGLNDVIRQIVFTLEIYGVK-NIVGIPFGYRGFF-EKGLSEMPLSRKVV 112 Query: 91 EQLLSYGGSPIGNSR--VKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGD 148 + + GGS +G SR K ++ D I+ G+ +L +GG+ Sbjct: 113 QNIHLSGGSLLGVSRGGAKTSDIVDSIEA-------------------RGINMLFVLGGN 153 Query: 149 DTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNER 208 T+ A + +++ ++VVG+PKTIDNDI+ + ++ G TA + + ++ E Sbjct: 154 GTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEA 213 Query: 209 SATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSF 268 + + + ++MGR+ G++ +++ L Q +D +PE+ F Sbjct: 214 HSAYHGIGLVKLMGRSSGFIAMHAS---LASGQ----------------VDICLIPEVPF 254 Query: 269 NLEVE---IERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMN 325 L+ + L ++E KGS + V+EGA +D++ + D+ G+ +L + Sbjct: 255 TLDGPNGVLRHLEHLIETKGSAVVCVAEGAGQDLL-------QKTNATDASGNPVLG--D 305 Query: 326 VGSWFADKFANMIK-----AERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGI 380 +G + K A+ + + Y R+ + + D L + AV A +G Sbjct: 306 IGVHLQQEIKKHFKDIGVPADVKYIDPT-YMIRACRANASDAILCTVLGQNAVHGAFAGF 364 Query: 381 SGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILRHTGQ 424 SG+T + + I E I R D N+ + L TGQ Sbjct: 365 SGITVGICNTHYVYLPIP-EVIAYPRRVDPNSRMWHRCLTSTGQ 407 >gnl|CDD|131535 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90). Length = 301 Score = 70.1 bits (172), Expect = 1e-12 Identities = 74/285 (25%), Positives = 124/285 (43%), Gaps = 52/285 (18%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINH--YNKILPKAELIYYRFGYQGLLLDDKITITEDMRQ 88 K+ LT+GG AP +++ I ++ Y+ E+ R GY+GL+ + + + Sbjct: 1 KIGILTSGGDAPGMNAAIRAVVRTAIYHGF----EVYGIRRGYKGLINGEIKPLES---K 53 Query: 89 NAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGD 148 N ++ GG+ +G +R F K E + + +L + G+ L IGGD Sbjct: 54 NVSGIIHRGGTILGTARCP--EF----------KTEEGRQKAVENLKKLGIEGLVVIGGD 101 Query: 149 DTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNER 208 + T A + I V+GLP TIDNDI ++G TA D I + Sbjct: 102 GSYTGA-----QKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTA 156 Query: 209 SATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSF 268 ++ R+ +I EVMGR+ G L YS I G + + +PE + Sbjct: 157 TSHERAFVI-EVMGRHAGDLALYSG------------IAT--------GAEIIIIPEFDY 195 Query: 269 NLEVEIERLSKVMEKKGSVA-IFVSEGACRDVIMDNRLSSGEKIK 312 +++ I+RL + E + I V+EG I+ + +KI+ Sbjct: 196 DIDELIQRLKEQHEAGKKHSIIIVAEGN----IVGSAKEVAKKIE 236 >gnl|CDD|162876 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal). Length = 745 Score = 69.7 bits (171), Expect = 1e-12 Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 35/222 (15%) Query: 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQN 89 ++ LT+GG A +++ + ++ I + R GYQGL+ D I E ++ Sbjct: 1 KRIGVLTSGGDAQGMNAAVRAVVR--MAIYVGCRVYAIREGYQGLV-DGGDNIEEANWED 57 Query: 90 AEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDD 149 +LS GG+ IG +R K F + + G +K N L++ G+ L IGGD Sbjct: 58 VRGILSLGGTIIGTARCK--EFRE--RPGRLKAARN--------LIKRGIDNLVVIGGDG 105 Query: 150 TNTTACDLLR-----YLKE-------------KNYNITVVGLPKTIDNDIIPIHQSLGAL 191 + T A DL R L+E ++ ++T+VGL +IDND+ ++GA Sbjct: 106 SLTGA-DLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGAD 164 Query: 192 TAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSA 233 +A D IS+ + R+ ++ EVMGR+CG+L +A Sbjct: 165 SALHRICEAIDAISSTAQSHQRAFVV-EVMGRHCGYLALMAA 205 Score = 53.1 bits (128), Expect = 1e-07 Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 52/222 (23%) Query: 70 GYQGLLLDDKITITEDMR----QNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDEN 125 G+ GL D+R + E + GGS +G R L KD Sbjct: 428 GFSGL-------ARGDVRELTWSDVEGWVGEGGSELGT------------NRELPGKD-- 466 Query: 126 PLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEK--NYNITVVGLPKTIDNDIIP 183 L + A++ + + L IGG + A L +EK + I +V +P TI N++ Sbjct: 467 -LGMIAYYFQKHKIDGLLIIGGFEA-FEALLQLEQAREKYPAFRIPMVVIPATISNNVPG 524 Query: 184 IHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDR 243 SLG+ TA + DNI SA+ R + + E MG G+L + Sbjct: 525 TEYSLGSDTALNEITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMA----------- 573 Query: 244 NYIDGFIFSPDFKGIDGVYLPEMSFN---LEVEIERLSKVME 282 G G D Y+PE + L+ +IE L + Sbjct: 574 ----GLA-----TGADAAYIPEEGISLKDLQEDIEHLKEKFA 606 >gnl|CDD|180830 PRK07085, PRK07085, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional. Length = 555 Score = 68.8 bits (169), Expect = 2e-12 Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 26/195 (13%) Query: 19 VLSFLEKDMVAH---KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLL 75 ++F++ + KV + +GG AP ++I L + K+ P ++L + G GLL Sbjct: 57 YVTFVKGSESSSKPLKVGVILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLL 116 Query: 76 LDDKITITEDMRQNAEQLLSYGG-SPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHL 134 I ITE+ ++ + GG IG+ R K I+ +E E + Sbjct: 117 NGKYIEITEE---VIDEYRNTGGFDMIGSGRTK------------IETEEQ-KEACLETV 160 Query: 135 MQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTID----NDIIPIHQSLGA 190 + + L IGGDD+NT A L Y + V+G+PKTID N+ I S G Sbjct: 161 KKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIET--SFGF 218 Query: 191 LTAAQVSACFFDNIS 205 TA + + NIS Sbjct: 219 DTATKTYSEMIGNIS 233 >gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase. Length = 484 Score = 68.2 bits (167), Expect = 4e-12 Identities = 74/269 (27%), Positives = 121/269 (44%), Gaps = 60/269 (22%) Query: 138 GVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG-------- 189 G+ ++ IGGD T A + ++ + + V G+PKTIDNDI I +S G Sbjct: 176 GINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEA 235 Query: 190 --ALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYID 247 A+ AA V A +N + + ++MGR G++ Y+ Sbjct: 236 QRAINAAHVEAESVEN----------GIGLVKLMGRYSGFIAMYAT-------------- 271 Query: 248 GFIFSPDFKGIDGVYLPEMSFNLEVE---IERLSKVMEKKGSVAIFVSEGACRDVIMDNR 304 + S D +D +PE F LE + E + K +++ G + I V+EGA +D+I ++ Sbjct: 272 --LASRD---VDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVVAEGAGQDLIAESM 326 Query: 305 LSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKSG---------YFARSA 355 SS + D+ G+ LL ++VG W + K IK + V+K Y R+ Sbjct: 327 ESSDLQ---DASGNKLL--LDVGLWLSQK----IKDHFTKVKKMPINLKYIDPTYMIRAI 377 Query: 356 PSGSEDLSLIKKMVVLAVDSAISGISGVT 384 PS + D + AV A++G +G T Sbjct: 378 PSNASDNVYCTLLAHSAVHGAMAGYTGFT 406 >gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences. Length = 539 Score = 67.4 bits (165), Expect = 8e-12 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 25/181 (13%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 K+ + +GG AP ++I L + K+ P ++L + G GLL ++ + +T+++ Sbjct: 69 KIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKEL---- 124 Query: 91 EQLLSY---GG-SPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIG 146 + +Y GG IG+ R K I+ +E + + + L IG Sbjct: 125 --IDTYRNTGGFDIIGSGRTK------------IETEEQ-FAKALTTAKKLKLDGLVIIG 169 Query: 147 GDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIP--IHQSLGALTAAQVSACFFDNI 204 GDD+NT A L Y + V+G+PKTID D+ I S G TA ++ + NI Sbjct: 170 GDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNI 229 Query: 205 S 205 Sbjct: 230 C 230 >gnl|CDD|173508 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional. Length = 1419 Score = 57.7 bits (139), Expect = 6e-09 Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 17/196 (8%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 K+ + +GG AP ++I + ++ + ++++I + G GL + +TIT+ + Sbjct: 179 KIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRF 238 Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 L G + + + R K+ N D I +E L +G+ I IGGD + Sbjct: 239 RNL--GGFNMLWSGRGKVRNKDDLIA----------IENIVAKLKLNGLVI---IGGDGS 283 Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIP--IHQSLGALTAAQVSACFFDNISNER 208 N+ A + Y E+ I+++G+PKTID D+ I S G TA + + N+ + Sbjct: 284 NSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDV 343 Query: 209 SATPRSLIIHEVMGRN 224 + VMGR+ Sbjct: 344 KTGHNVYHVVRVMGRS 359 >gnl|CDD|177893 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase. Length = 568 Score = 56.7 bits (137), Expect = 1e-08 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 142 LHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI----IPIHQSLGALTAAQVS 197 L IGGDD+NT AC L Y + KN V+G PKTID D+ +P S G TA ++ Sbjct: 194 LVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPT--SFGFDTACKIY 251 Query: 198 ACFFDNISNERSATPRSLIIHEVMGR 223 + N+ + +T + +MGR Sbjct: 252 SEMIGNVMIDARSTGKYYHFVRLMGR 277 >gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional. Length = 360 Score = 55.5 bits (134), Expect = 3e-08 Identities = 91/350 (26%), Positives = 152/350 (43%), Gaps = 53/350 (15%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINH----YNKILPKAELIYYRFGYQGLLLDDKITITEDM 86 ++ LT+GG L+++I +++ Y E+I R QGL+ I D+ Sbjct: 6 RIGILTSGGDCAGLNAVIRAVVHRARGTYG-----WEVIGIRDATQGLMARPPQYIELDL 60 Query: 87 RQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIG 146 Q + LL GG+ +G + K F+ + G +D + + +H G+ L IG Sbjct: 61 DQ-VDDLLRMGGTILGTTN-KGDPFAFPMPDG-SLRDRSQEIIDGYH--SLGLDALIGIG 115 Query: 147 GDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN 206 GD + +LR L ++ I +VG+PKTIDND+ S+G TA ++ D + Sbjct: 116 GDGS----LAILRRLAQQG-GINLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHF 170 Query: 207 ERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEM 266 ++ R +I+ EVMGR+ G + A +A I G G D + +PE+ Sbjct: 171 TAASHNRVMIL-EVMGRDAGHI-ALAAG-----------IAG--------GADVILIPEI 209 Query: 267 SFNLEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKR-DSFGHILLDKM 324 + LE +++ + E+ K + VSE R GE++ + + G Sbjct: 210 PYTLENVCKKIRERQEEGKNFCLVVVSEAV--------RTEEGEQVTKTQALGEDRYG-- 259 Query: 325 NVGSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVD 374 +G + A++ A AE + V G+ R D L V AVD Sbjct: 260 GIGQYLAEQIAERTGAE-TRVTVLGHIQRGGIPSPRDRLLASAFGVAAVD 308 >gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein; Provisional. Length = 1328 Score = 55.0 bits (132), Expect = 3e-08 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 23/173 (13%) Query: 29 AHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQ 88 A ++ + +GG A ++I L+++ ++L + G +G+ + +TED Sbjct: 102 ARRIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDD-- 159 Query: 89 NAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDEN---PLEVSAHHLMQSGVTILHTI 145 +L+ GG I C R I+ +E LE+ L G+ + I Sbjct: 160 -INGILNQGGFNI-----------ICSGRHKIETEEQMRASLEI-CEKLKLHGLVV---I 203 Query: 146 GGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIP--IHQSLGALTAAQV 196 GGDD+NT A L Y K + + VVG PKTID D+ I S G TA + Sbjct: 204 GGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKT 256 >gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase. Length = 290 Score = 33.3 bits (76), Expect = 0.13 Identities = 14/38 (36%), Positives = 21/38 (55%) Query: 136 QSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL 173 Q+G I H + T T + R+LKE+N + +VGL Sbjct: 159 QTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGL 196 >gnl|CDD|178598 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional. Length = 610 Score = 32.4 bits (74), Expect = 0.21 Identities = 14/37 (37%), Positives = 19/37 (51%) Query: 145 IGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181 IGG +NT A L E VVG+P T++ D+ Sbjct: 180 IGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDL 216 >gnl|CDD|183302 PRK11761, cysM, cysteine synthase B; Provisional. Length = 296 Score = 29.8 bits (68), Expect = 1.2 Identities = 9/15 (60%), Positives = 12/15 (80%) Query: 159 RYLKEKNYNITVVGL 173 RYLKE+N + +VGL Sbjct: 186 RYLKEQNPAVQIVGL 200 >gnl|CDD|182753 PRK10814, PRK10814, outer membrane-specific lipoprotein transporter subunit LolC; Provisional. Length = 399 Score = 29.3 bits (66), Expect = 1.9 Identities = 12/22 (54%), Positives = 15/22 (68%) Query: 280 VMEKKGSVAIFVSEGACRDVIM 301 VMEK+G VAI ++G R IM Sbjct: 290 VMEKQGEVAILQTQGLTRRQIM 311 >gnl|CDD|178870 PRK00109, PRK00109, Holliday junction resolvase-like protein; Reviewed. Length = 138 Score = 29.0 bits (66), Expect = 2.7 Identities = 9/26 (34%), Positives = 13/26 (50%) Query: 156 DLLRYLKEKNYNITVVGLPKTIDNDI 181 L + +KE + VVGLP +D Sbjct: 45 RLEKLIKEWQPDGLVVGLPLNMDGTE 70 >gnl|CDD|129361 TIGR00259, thylakoid_BtpA, membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. Length = 257 Score = 28.6 bits (64), Expect = 3.5 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 7/54 (12%) Query: 230 AYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK 283 A S N+ + + DG I + K DGV FN V+ R+S+ +EK Sbjct: 205 AGSGVNLENVEELLSIADGVIVATTIKK-DGV------FNNFVDQARVSQFVEK 251 >gnl|CDD|132370 TIGR03327, AMP_phos, AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases. Length = 500 Score = 28.1 bits (63), Expect = 4.6 Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 75 LLDDKITITEDMRQNAEQLLSYGGSPIG 102 L D I + + + N E ++YGG PIG Sbjct: 298 LARDFIELGDRLGMNVECAITYGGQPIG 325 >gnl|CDD|149704 pfam08728, CRT10, CRT10. CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance. Length = 562 Score = 27.8 bits (62), Expect = 4.9 Identities = 8/28 (28%), Positives = 11/28 (39%) Query: 250 IFSPDFKGIDGVYLPEMSFNLEVEIERL 277 P + IDG+ + E S N L Sbjct: 521 FPYPGIRTIDGLAVRERSANGRKPRYLL 548 >gnl|CDD|149220 pfam08013, Tagatose_6_P_K, Tagatose 6 phosphate kinase. Proteins in this family are tagatose 6 phosphate kinases. Length = 424 Score = 27.9 bits (63), Expect = 5.2 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 18/71 (25%) Query: 167 NITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCG 226 N+T +P + + Q L A + E S P L+I + R Sbjct: 372 NLTGQPIPLPL------LSQYLPEQYRAVRAG--------ELSPDPEELVIDRI--RQV- 414 Query: 227 WLTAYSAHCYL 237 L Y+A C+L Sbjct: 415 -LRDYAAACHL 424 >gnl|CDD|162220 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. Length = 454 Score = 27.8 bits (62), Expect = 5.4 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 10/56 (17%) Query: 124 ENPLEVSAHH-------LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG 172 NPL AH+ L Q + + G T T + RYLKE N +VG Sbjct: 150 SNPL---AHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVG 202 >gnl|CDD|180924 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase; Validated. Length = 182 Score = 27.6 bits (62), Expect = 6.5 Identities = 7/18 (38%), Positives = 11/18 (61%) Query: 154 ACDLLRYLKEKNYNITVV 171 A DL L ++ Y +TV+ Sbjct: 17 AADLTSQLTKRGYQVTVL 34 >gnl|CDD|129352 TIGR00250, RNAse_H_YqgF, RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC. Length = 130 Score = 27.5 bits (61), Expect = 7.7 Identities = 10/25 (40%), Positives = 12/25 (48%) Query: 159 RYLKEKNYNITVVGLPKTIDNDIIP 183 LKE + VVGLP +D P Sbjct: 42 ELLKEWTPDKIVVGLPLNMDGTEGP 66 >gnl|CDD|162027 TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. Length = 275 Score = 27.4 bits (62), Expect = 8.1 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%) Query: 154 ACDLLRYLKEKNYNITVVGLPKTIDN 179 DL L E+ Y ITVV L ID Sbjct: 8 TADLPPELIEE-YGITVVPLTVIIDG 32 >gnl|CDD|177494 PHA02878, PHA02878, ankyrin repeat protein; Provisional. Length = 477 Score = 27.2 bits (60), Expect = 8.8 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 18/129 (13%) Query: 203 NISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVY 262 N N TP S + + + N G + + + D +GFI +D + Sbjct: 294 NSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFI-----DNMDCIT 348 Query: 263 ----LPEMSFNLEVEIERLSKV-MEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFG 317 L ++ E E+ RL+ + + S F+ C + + +L + I Sbjct: 349 SNKRLNQIKDKCEDELNRLASIKITNTYSFDDFLK---CDNSTLLCKLVNNSIID----- 400 Query: 318 HILLDKMNV 326 IL+D N+ Sbjct: 401 DILIDSFNI 409 >gnl|CDD|166671 PLN03030, PLN03030, cationic peroxidase; Provisional. Length = 324 Score = 27.2 bits (60), Expect = 9.2 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 14/77 (18%) Query: 145 IGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG----------AL--- 191 +GG TTAC RY + N+ T G +ID +P Q+L AL Sbjct: 184 VGGHTIGTTACQFFRY-RLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTG 242 Query: 192 TAAQVSACFFDNISNER 208 ++ + A FF N+ N R Sbjct: 243 SSNRFDASFFSNLKNGR 259 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.138 0.402 Gapped Lambda K H 0.267 0.0693 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,945,797 Number of extensions: 451603 Number of successful extensions: 877 Number of sequences better than 10.0: 1 Number of HSP's gapped: 851 Number of HSP's successfully gapped: 40 Length of query: 426 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 330 Effective length of database: 3,920,105 Effective search space: 1293634650 Effective search space used: 1293634650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.2 bits)