RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780227|ref|YP_003064640.1|
pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (426 letters)



>3hno_A Pyrophosphate-dependent phosphofructokinase; structural
           genomics, PSI-2, protein structure initiative; 2.00A
           {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
           (A:1-148,A:302-364)
          Length = 211

 Score =  115 bits (290), Expect = 9e-27
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 10/160 (6%)

Query: 27  MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIY-YRFGYQGLLLDDKITITED 85
           M A    +  +GG+   +++    +I    K   K   IY  R G  G L +D I   ++
Sbjct: 1   MAAKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQE 60

Query: 86  MRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTI 145
                  L        G+ R KL +         ++++    E          +      
Sbjct: 61  SDAAISALRYTPSGAFGSCRYKLKS---------LEQNRREYERLIEVFKAHDIGYFFYN 111

Query: 146 GGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH 185
           GG D+  T   + +      Y I  + +PKT+DND+   H
Sbjct: 112 GGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPARH 151


>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma
           brucei} PDB: 3f5m_A* (A:28-234,A:388-429)
          Length = 249

 Score =  106 bits (266), Expect = 6e-24
 Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 17/159 (10%)

Query: 23  LEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITI 82
           +  +     +  +T GGI P L+ +I  +      +     +I +RFGY GL      T 
Sbjct: 64  IHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTA 123

Query: 83  TEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTIL 142
            E  R     +  YGG+ +G+SR                      +     L + GV IL
Sbjct: 124 IELHRGRVTNIHHYGGTILGSSR-----------------GPQDPKEMVDTLERLGVNIL 166

Query: 143 HTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181
            T+GGD T   A  + +  K +  +I+V G+PKTIDND+
Sbjct: 167 FTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDL 205


>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase;
           HET: FBP; 2.11A {Borrelia burgdorferi B31}
           (A:1-211,A:433-504)
          Length = 283

 Score =  102 bits (255), Expect = 1e-22
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%)

Query: 29  AHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQ 88
           A  +  + +GG AP   ++I  + +   K  P ++L  ++ G  GLL +DKI +TE +  
Sbjct: 72  ALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLIN 131

Query: 89  NAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGD 148
           +     + GG  I +S                 + E     +     ++ +  +  IGGD
Sbjct: 132 S---YRNTGGFDIVSSGRTKI------------ETEEHYNKALFVAKENNLNAIIIIGGD 176

Query: 149 DTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181
           D+NT A  L  Y K+   NI V+G+PKTID D+
Sbjct: 177 DSNTNAAILAEYFKKNGENIQVIGVPKTIDADL 209


>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET:
           FBP ADP; 2.40A {Escherichia coli} (A:1-132,A:254-306)
          Length = 185

 Score = 89.5 bits (222), Expect = 7e-19
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 23/152 (15%)

Query: 30  HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQN 89
            K+  LT+GG AP +++ I  ++   + +    E++    GY GL  D  + +    R +
Sbjct: 3   KKIGVLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLD---RYS 57

Query: 90  AEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDD 149
              +++ GG+ +G++R                +DEN   V+  +L + G+  L  IGGD 
Sbjct: 58  VSDMINRGGTFLGSARFPE------------FRDENIRAVAIENLKKRGIDALVVIGGDG 105

Query: 150 TNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181
           +   A  L             +GLP TIDNDI
Sbjct: 106 SYMGAMRL------TEMGFPCIGLPGTIDNDI 131


>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A
           {Bacillus stearothermophilus} (A:1-131,A:251-305)
          Length = 186

 Score = 89.5 bits (222), Expect = 8e-19
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 23/152 (15%)

Query: 30  HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQN 89
            ++  LT+GG +P +++ I  ++     I    E+     GY GL+  +   +      +
Sbjct: 2   KRIGVLTSGGDSPGMNAAIRSVVRK--AIYHGVEVYGVYHGYAGLIAGNIKKLE---VGD 56

Query: 90  AEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDD 149
              ++  GG+ +  +R                K E   +     L + G+  L  IGGD 
Sbjct: 57  VGDIIHRGGTILYTARCPE------------FKTEEGQKKGIEQLKKHGIQGLVVIGGDG 104

Query: 150 TNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181
           +   A  L        +    VG+P TIDNDI
Sbjct: 105 SYQGAKKL------TEHGFPCVGVPGTIDNDI 130


>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus
           bulgaricus, transferase; 1.85A {Lactobacillus
           delbrueckii subsp} (A:1-131,A:253-303)
          Length = 182

 Score = 89.1 bits (221), Expect = 1e-18
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 23/152 (15%)

Query: 30  HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQN 89
            ++  LT+GG AP +++ +  +      I    E+   R+G+ GL+  D   +     ++
Sbjct: 2   KRIGILTSGGDAPGMNAAVRAVT--RVAIANGLEVFGIRYGFAGLVAGDIFPLE---SED 56

Query: 90  AEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDD 149
              L++  G+ + ++R                 +E         L + G+  +  IGGD 
Sbjct: 57  VAHLINVSGTFLYSARYPE------------FAEEEGQLAGIEQLKKHGIDAVVVIGGDG 104

Query: 150 TNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181
           +   A  L        +    +GLP TIDNDI
Sbjct: 105 SYHGALQL------TRHGFNSIGLPGTIDNDI 130


>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma
           brucei} PDB: 3f5m_A* (A:235-387,A:441-487)
          Length = 200

 Score = 88.6 bits (219), Expect = 1e-18
 Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 35/180 (19%)

Query: 186 QSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNY 245
           ++ G  TA + +         E  +    + + ++MGR+ G++ A +A            
Sbjct: 3   RTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVA---------- 52

Query: 246 IDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRL 305
                        +   +PE   + +  +  L +      S  I V+EG  +D       
Sbjct: 53  ---------SAQANICLVPENPISEQEVMSLLERRFCHSRSCVIIVAEGFGQDWGR---- 99

Query: 306 SSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIV----QKSG---YFARSAPSG 358
                   D+ G+  L   ++G    +K    +KA +S       K     Y  R+ P G
Sbjct: 100 ---GSGGYDASGNKKLI--DIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPG 154


>3hno_A Pyrophosphate-dependent phosphofructokinase; structural
           genomics, PSI-2, protein structure initiative; 2.00A
           {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
           (A:149-301)
          Length = 153

 Score = 76.2 bits (187), Expect = 8e-15
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 27/172 (15%)

Query: 187 SLGALTAAQVSACFFDNISNERSAT---PRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDR 243
             G  + A+  A      S + ++       + + EVMGR+ GW+ A             
Sbjct: 5   CPGFGSVAKYIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAG----------- 53

Query: 244 NYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDN 303
               G   SP+ +    +  PE+SF+ +  + ++   ++K G  ++ VSEG       D+
Sbjct: 54  ----GLASSPEREIPVVILFPEISFDKQKFLAKVDSCVKKFGYCSVVVSEGV----KGDD 105

Query: 304 RLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAE-RSIVQKSGYFARS 354
                ++  RD+FGH  L    V    A      +  +    V  + Y  R+
Sbjct: 106 GKFLSDQGVRDAFGHAQLG--GVAPVVASMVKEGLGLKYHWGV--ADYLQRA 153


>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase;
           HET: FBP; 2.11A {Borrelia burgdorferi B31}
           (A:212-315,A:388-432,A:505-555)
          Length = 200

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 29/122 (23%)

Query: 184 IHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDR 243
           I  S G  +A ++ +    N+  +  +T +     ++MGR+   +    A          
Sbjct: 3   IEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALK-------- 54

Query: 244 NYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVM---------EKKGSVAIFVSEG 294
                          +   + E     +  +  +   M                + V EG
Sbjct: 55  ------------THPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEG 102

Query: 295 AC 296
             
Sbjct: 103 LI 104


>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A
           {Bacillus stearothermophilus} (A:132-250,A:306-319)
          Length = 133

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 24/141 (17%)

Query: 187 SLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYI 246
           ++G  TA        D I +  ++  R+ +I EVMGR+ G +  +S              
Sbjct: 5   TIGFDTALNTVIDAIDKIRDTATSHERTYVI-EVMGRHAGDIALWSGLA----------- 52

Query: 247 DGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRL 305
                     G + + +PE  +++   I RL +  E+ K    I V+EG    V    ++
Sbjct: 53  ---------GGAETILIPEADYDMNDVIARLKRGHERGKKHSIIIVAEGVGSGVDFGRQI 103

Query: 306 S--SGEKIKRDSFGHILLDKM 324
              +G + +    GH++  +M
Sbjct: 104 QEATGFETRVTVLGHVIDQRM 124


>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET:
           FBP ADP; 2.40A {Escherichia coli} (A:133-253,A:307-320)
          Length = 135

 Score = 74.1 bits (182), Expect = 3e-14
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 24/136 (17%)

Query: 187 SLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYI 246
           ++G  TA        D + +  S+  R  ++ EVMGR CG LT  +A             
Sbjct: 5   TIGFFTALSTVVEAIDRLRDTSSSHQRISVV-EVMGRYCGDLTLAAAIA----------- 52

Query: 247 DGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRL 305
                     G + V +PE+ F+ E  +  +   + K K    + ++E  C    + + +
Sbjct: 53  ---------GGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFI 103

Query: 306 S--SGEKIKRDSFGHI 319
              +G + +    GHI
Sbjct: 104 EKETGRETRATVLGHI 119


>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus
           bulgaricus, transferase; 1.85A {Lactobacillus
           delbrueckii subsp} (A:132-252)
          Length = 121

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 24/139 (17%)

Query: 184 IHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDR 243
              ++G  TA   +    D I +  S+  R  I+  VMGRNCG +               
Sbjct: 2   TDATIGYDTACMTAMDAIDKIRDTASSHHRVFIV-NVMGRNCGDIAMRVGVA-------- 52

Query: 244 NYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMD 302
                        G D + +PE  +++E    RL +  E  K    + V+EG        
Sbjct: 53  ------------CGADAIVIPERPYDVEEIANRLKQAQESGKDHGLVVVAEGVMTADQFM 100

Query: 303 NRLS--SGEKIKRDSFGHI 319
             L       ++ +  GH+
Sbjct: 101 AELKKYGDFDVRANVLGHM 119


>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (A:550-614)
          Length = 65

 Score = 32.0 bits (72), Expect = 0.15
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 269 NLEVEIE 275
           N+EV+IE
Sbjct: 1   NVEVKIE 7


>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (B:550-611)
          Length = 62

 Score = 31.6 bits (71), Expect = 0.20
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 269 NLEVEIE 275
           N+EV+IE
Sbjct: 1   NVEVKIE 7


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 30.5 bits (69), Expect = 0.40
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 18/37 (48%)

Query: 57 KILP---KAELIYYRFGYQGLLLDDKITITEDMRQNA 90
           ++      E+++YR    G+           M Q A
Sbjct: 4  DVMSIESLVEVVFYR----GMT----------M-QVA 25


>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl
           coenzyme A, isocitrate lyase, persistence, GLCB,
           structural genomics, PSI; 2.10A {Mycobacterium
           tuberculosis} (A:580-741)
          Length = 162

 Score = 29.1 bits (65), Expect = 0.96
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 81  TITEDMRQNAEQLLSYGGSPI--GNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQ 136
            I E++  N + +L Y    +  G    K+ +  D     L+ +D   L +S+  L  
Sbjct: 14  EIREEVDNNCQSILGYVVRWVDQGVGCSKVPDIHDV---ALM-EDRATLRISSQLLAN 67


>3hl3_A Glucose-1-phosphate thymidylyltransferase; IDP01254,
           sucrose, structural genomics, center for structural
           genomics of infectious diseases; HET: SUC; 2.76A
           {Bacillus anthracis} (A:)
          Length = 269

 Score = 29.1 bits (63), Expect = 1.2
 Identities = 18/127 (14%), Positives = 34/127 (26%)

Query: 173 LPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYS 232
                ++ ++ I          +     F N         +S+   E  G          
Sbjct: 118 EDFVGNDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQNRKII 177

Query: 233 AHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVS 292
                      +Y    I+  D K    +   + S   E+EI  ++    K+G +     
Sbjct: 178 EIEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINNWYLKRGVLTYNEM 237

Query: 293 EGACRDV 299
            G   D 
Sbjct: 238 SGWWTDA 244


>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
           transferase; HET: PTR H8H; 2.20A {Homo sapiens}
           (A:147-257)
          Length = 111

 Score = 27.8 bits (61), Expect = 2.7
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 87  RQNAEQLLSYGGSPIGNSRVKLTNFSDCIKR-GLIKKDENPLEVSAHHLMQSGVTILHTI 145
           R+ +E+LL    +P G   V+ +  +       +   D        H+ ++   +    I
Sbjct: 11  RRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYI 70

Query: 146 GGDDTNTTACDLLRYLKEKNYNITVV 171
                  +   L+ Y  +    +   
Sbjct: 71  TSRTQFNSLQQLVAYYSKHADGLCHR 96


>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine
           kinase, phosphorylation, SH2, SH3, phosphotyrosine,
           proto-oncogene, phosphotransferase; HET: PTR; 1.50A
           {Homo sapiens} (A:64-174)
          Length = 111

 Score = 27.8 bits (61), Expect = 2.7
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 87  RQNAEQLLSYGGSPIGNSRVKLTNFSDCIKR-GLIKKDENPLEVSAHHLMQSGVTILHTI 145
           R+ +E+LL    +P G   V+ +  +       +   D        H+ ++   +    I
Sbjct: 11  RRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYI 70

Query: 146 GGDDTNTTACDLLRYLKEKNYNITVV 171
                  +   L+ Y  +    +   
Sbjct: 71  TSRTQFNSLQQLVAYYSKHADGLCHR 96


>1gef_A Holliday junction resolvase; HJC, hydrolase; 2.00A
           {Pyrococcus furiosus} (A:)
          Length = 123

 Score = 27.1 bits (60), Expect = 3.9
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 340 AERSIVQK---SGYFA-RSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILR 395
           AER +++     G+   RSA S   DL        L ++  ++    +        ++ R
Sbjct: 8   AERELIKLLEKHGFAVVRSAGSKKVDLVAGNGKKYLCIEVKVTKKDHLYVGKR---DMGR 64

Query: 396 IIKFEDIRGGRVF 408
           +I+F    GG   
Sbjct: 65  LIEFSRRFGGIPV 77


>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP;
           1.8A {Lactobacillus sanfranciscensis}
           (A:1-113,A:263-319)
          Length = 170

 Score = 27.0 bits (59), Expect = 5.5
 Identities = 16/142 (11%), Positives = 42/142 (29%), Gaps = 19/142 (13%)

Query: 11  LDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELI---YY 67
           + +++   + +   + +       L+  G    +   +   ++   K +   +LI     
Sbjct: 44  IALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV-TNVDPETKTIKVKDLITNEEK 102

Query: 68  RFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPL 127
              Y  L++   I   E M  +   + + G               D         + N  
Sbjct: 103 TEAYDKLIMTTAIITDEYMHSSNRDIFAAG---------------DSAAVHYNPTNSNAY 147

Query: 128 EVSAHHLMQSGVTILHTIGGDD 149
              A + ++ G  +   +  D 
Sbjct: 148 IPLATNAVRQGRLVGLNLTEDK 169


>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A
           {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A*
           (A:1-106,A:189-283)
          Length = 201

 Score = 26.3 bits (57), Expect = 7.9
 Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 14/105 (13%)

Query: 87  RQNAEQLLSYGGSPIGNSRVKLTNFSDC---IKRGLIKKDENPLEVSAHHLMQSGVTILH 143
            +   ++    G+  G   V  T        ++   +  +   L + AH L  +   IL 
Sbjct: 68  AEMRHRIGQLMGTSQGGMWVG-TFHGLAHRLLRAHHMDANFAELLLRAHELWLNKPHILQ 126

Query: 144 TIGGD----------DTNTTACDLLRYLKEKNYNITVVGLPKTID 178
                          DTN      +R L      + +VG      
Sbjct: 127 HYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSI 171


>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid
           decarboxylase, X-RAY diffraction, structural genomics,
           NPPSFA; 2.15A {Aquifex aeolicus} (A:)
          Length = 189

 Score = 26.2 bits (57), Expect = 8.7
 Identities = 6/62 (9%), Positives = 17/62 (27%)

Query: 154 ACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPR 213
              LL+ L+E ++++ +V               +   +     +    +           
Sbjct: 17  GIKLLQVLEELDFSVDLVISRNAKVVLKEEHSLTFEEVLKGLKNVRIHEENDFTSPLASG 76

Query: 214 SL 215
           S 
Sbjct: 77  SR 78


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,191,160
Number of extensions: 142669
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 26
Length of query: 426
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 335
Effective length of database: 1,879,794
Effective search space: 629730990
Effective search space used: 629730990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)